Agarose isoelectric focusing can improve resolution of membrane proteins in the two-dimensional electrophoresis of bacterial proteins

Electrophoresis

Volumn 27, Issue 20, 2006, Pages 4096-4111

  Altenhofer, Pia ^a   Schierhorn, Angelika ^b   Fricke, Beate ^a  

^a MARTIN LUTHER UNIVERSITÄT HALLE WITTENBERG   (Germany)

^b MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

Author keywords

Agarose isoelectric focusing; Blue native electrophoresis; Mass spectrometry; Membrane proteins of Pseudomonas aeruginosa; Two dimensional gel electrophoresis

Indexed keywords

ELECTROPHORESIS; MEMBRANES; PROTEINS;

AGAROSE; AGAROSE ISOELECTRIC FOCUSING; BLUE-NATIVE ELECTROPHORESIS; MEMBRANE PROTEIN OF PSEUDOMONA AERUGINOSA; MEMBRANE PROTEINS; NON-NATIVE; PSEUDOMONAS AERUGINOSA; SDS-PAGE; TWO DIMENSIONAL ELECTROPHORESIS; TWO-DIMENSIONAL GEL ELECTROPHORESIS;

MASS SPECTROMETRY;

AGAROSE; BACTERIAL PROTEIN; CHAPERONIN; ELECTRON TRANSFERRING FLAVOPROTEIN; ELONGATION FACTOR TU; FLAGELLIN; GLUTAMATE AMMONIA LIGASE; MEMBRANE PROTEIN; SARCOSINE OXIDASE;

ARTICLE; BACTERIAL GROWTH; ELECTROPHORETIC MOBILITY; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; INTERMETHOD COMPARISON; ISOELECTRIC FOCUSING; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PHASE SEPARATION; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRECIPITATION; PROTEIN AGGREGATION; PROTEIN ANALYSIS; PROTEIN DEGRADATION; PROTEIN DENATURATION; PROTEIN DETERMINATION; PROTEIN LOCALIZATION; PSEUDOMONAS AERUGINOSA; SOLUBILITY; TWO DIMENSIONAL ELECTROPHORESIS;

EID: 33750582211     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.200600051     Document Type: Article

References (78)

1. Salton, M. R., Microbiol. Sci. 1987, 4, 100-105.
2. Fricke, B., Parchmann, O., Kruse, K., Rücknagel, P. et al., Biochim. Biophys. Acta 1999, 1454, 236-250.
3. Seltmann, G., Die bakiterielle Zellwand, Gustav Fischer Verlag, Jena 1982, pp. 34-107.
4. Quinn, J. P., Clin. Infect. Dis. 1998, 27, 117-124.
5. Govan, J. R. W., Deretic, V., Microbiol. Rev. 1996, 60, 539-574.
6. Feltman, H., Schulert, G., Khan, S., Jain, M. et al., Microbiology 2001, 147, 2659-2669.
7. Nikaldo, H., J. Bacteriol. 1996, 178, 5853-5859.
8. Masuda, N., Sakagawa, E., Ohya, S., Antimicrob. Agents Chemother. 1995, 39, 645-694.
9. Kobayashi, H., Treat. Respir. Med. 2005, 4, 241-253.
10. Van Delden, C., lglewski, B. H., Emerg. Infect. Dis. 1998, 4, 551-560.
11. Wilhelm, S., Tommassen, J., Jaeger, K.-E., J. Bacteriol. 1999, 181, 6977-6986.
12. Sokol, P. A., Infect. Immun. 1987, 55, 2021-2025.
13. Bainbridge, T, Fick, R. B., Jr., J. Lab. Clin. Med. 1989, 114, 728-733.
14. Schmidtchen, A., Holst, E., Tapper, H., Bjork, L., Microb. Pathog. 2003, 34, 47-55.
15. Gohon, Y., Pavlov, G., Timmins, P., Tribet, C. et al., Anal. Biochem. 2004, 334, 318-334.
16. Fejes, A. P., Yi, E. C., Goodlett, D. R., Beatty, J. T, Photosynth. Res. 2003, 78, 195-203.
17. Stanislavsky E. S., Lam, J. S., FEMS Microbiol. Rev. 1997, 21, 243-277.
18. Görg, A., Obermeier, C., Boguth, G., Harder, A. et al., Electrophoresis 2000, 21, 1037-1053.
19. Helenius, A., Simons, K., Proc. Natl. Acad. Sci. USA 1977, 74, 529-532.
20. Bhakdi, S., Bhakdi-Lehnen, B., Bjerrum O. J., Biochim. Biophys. Acta 1977, 470, 35-44.
21. Jaeger, K E., Adrian, F. J., Meyer, H. E., Hancock, R. E. W., Winkler, U. K., Biochim. Blophys. Acta 1992, 1120, 315-321.
22. Schägger, H., von Jagow, G., Anal. Biochem. 1991, 199, 223-231.
23. Schägger, H., Cramer, W. A., von Jagow, G., Anal. Biochem. 1994, 217, 220-230.
24. Grandier-Vazeille, X., Guérin, M., Anal. Biochem. 1996, 242, 248-254.
25. Palmisano, A., Zara, V., Hönlinger, A., Vozza, A. et al., Biochem. J. 1998, 333, 151-158.
26. Chaudhuri, M., Ott, R. D., Saha, L., Williams, S., Hill, G. C., Parasitol. Res. 2005, 96, 178-183.
27. Millar, A. H., Eubel, H., Jänsch, L., Kruft, V. et al., Plant Mol. Biol. 2004, 56, 77-90.
28. Rexroth, S., Meyer zu Tittingdorf, J. M. W., Krause, F., Dencher, N. A., Seelert, H., Electrophoresis 2003, 24, 2814-2823.
29. Moslavac, S., Bredemeier, R., Mirus, O., Granvogl, B. et al., J. Proteome Res. 2005, 4, 1330-1338.
30. Eubel, H., Heinemeyer, J., Braun, H. P., Plant Physiol. 2004, 134, 1450-1459.
31. Komenda, J., Reisinger, V., Müller, B. C., Dobáková, M. et al., J. Biol. Chem. 2004, 279, 48620-48629.
32. Stenberg, F., Chovanec, P., Maslen, S. L., Robinson, C. V. et al., J. Biol. Chem. 2005, 280, 34409-34419.
33. Krall, L., Wiedemann, U., Unsin, G., Weiss, S. et al., Proc. Natl. Acad. Sci. USA 2002, 99, 11405-11410.
34. Kao, M.-C., Nakamaru-Ogiso, E., Matsuno-Yagi, A., Yagi, T, Biochemistry 2005, 44, 9545-9554.
35. Aufurth, S., Schägger, H., Müller, V., J. Biol. Chem. 2000, 275, 33297-33301.
36. Karnezis, T, Epa, V. C., Stone, B. A., Stanisich, V. A., Glycobiology 2003, 13, 693-706.
37. Kao, M.-C., Di Bernardo, S., Nakamaru-Ogiso, E., Miyoshi, H. et al., Biochemistry 2005, 44, 3562-3571.
38. Heermann, R., Altendorf, K., Jung, K., Biochim. Biophys. Acta 1998, 1415, 114-124.
39. Bessonneau, P., Besson, V., Collinson, I., Duong, F., EMBO J. 2002, 21, 995-1003.
40. Oates, J., Barrett, C. M. L., Barnett, J. P., Byrne, K. G. et al., J. Mol. Biol. 2005, 346, 295-305.
41. Büttner, K., Bernhardt, J., Scharf, C., Schmid, R. et al., Electrophoresis 2001, 22, 2908-2935.
42. Yan, J. X., Devenish, A. T, Wait, R., Stone, T. et al., Proteomics 2002, 2, 1682-1698.
43. Volgt, B., Schweder, T., Becher, D., Ehrenreich, A. et al., Proteomics 2004, 4, 1465-1490.
44. Santoni, V., Molloy, M., Rabilloud, T., Electrophoresis 2000, 21, 1054-1070.
45. Thomas, T C., McNamee, M. G., Methods Enzymol. 1990, 182, 499-520.
46. Wilkins, M. R., Gasteiger, E., Sanchez, J. C., Bairoch, A., Hochstrasser, D. F., Electrophoresis 1998, 19, 1501-1505.
47. Molloy, M. P., Herbert, B. R., Walsh, B. J., Tyler, M. I. et al., Electrophoresis 1998, 19, 837-844.
48. Coughenour, H. D., Spaulding, R. S., Thompson, C. M., Proteomics 2004, 4, 3141-3155.
49. Gonenne, A., Ernst, R., Anal. Biochem. 1978, 87, 28-38.
50. Rabilloud, T., Adessi, C., Giraudel, A., Lunari, J., Electrophoresis 1997, 18, 307-316.
51. Chevallet, M., Santoni, V., Poinas, A., Rouquie, D. et al., Electrophoresis 1998, 19, 1901-1909.
52. Nouwens, A. S., Cordwell, S. J., Larsen, M. R., Molloy, M. P. et al., Electrophoresis 2000, 21, 3797-3809.
53. Nouwens, A. S., Willcox, M. D. P., Walsh, B. J., Cordwell, S. J., Proteomics 2002, 2, 1325-1346.
54. Parmar, M. M., Blake, M. S., Madden, T. D., Vaccine 1997, 15, 1641-1651.
55. Garfin, D. E., Methods Erizymol. 1990, 182, 425-441.
56. Laemmli, U. K., Nature 1970, 227, 680-685.
57. Wilson, C. M., Methods Enzymol. 1983, 91, 236-247.
58. Stegmann, J., Ventzki, R., Schrödel, A., de Marco, A., Proteomics 2005, 5, 2002-2009.
59. Bériault, R., Chénier, D., Singh, R., Middaugh, J. et al., Electrophoresis 2005, 26, 2892-2897.
60. Tsirogianni, E., Aivaliotis, M., Papasotitiou, D. G., Karas, M. et al., Amino Acids 2006, 30, 63-72.
61. Castro, O. A., Zorreguieta, A., Ielmini, V., Vega, G. et al., J. Bacteriol. 1996, 178, 6043-6048.
62. Reddy, T. L. P., Weber, M. M., J. Bacteriol. 1986, 167, 1-6.
63. Pharmacia Fine Chemicals, Isoelectric Focusing. Principles and Methods, Ljungföretagen, Sweden 1982.
64. Tomonaga, T, Matsushita, K., Yamaguchi, S., Oh-Ishi, M. et al., Clin. Cancer Res. 2004, 10, 2007-2014.
65. Oh-Ishi, M., Satoh, M., Maeda, T., Electrophoresis 2000, 21, 653-1669.
66. Manabe, T., Mizuma, H., Watanabe, K., Electrophoresis 1999, 20, 830-835.
67. Hirabayashi, T., Anal. Biochem. 1981, 117, 443-451.
68. Hirabayashi, T., Electrophoresis 2000, 21, 446-451.
69. Oh-Ishi, M., Maeda, T., J. Chromatogr. B 2002, 771, 49-66.
70. Thompsen, B. J., Burghes, A. H. M., Dunn, M. J., Dubowitz, V., Electrophoresis 1981, 2, 251-258.
71. Gombocz, E., Cortez, E., Electrophoresis 1999, 20, 1365-1372.
72. Sigler, P. B., Xu, Z., Rye, H. S., Burston, S. G. et al., Ann. Rev. Biochem. 1998, 67, 581-608.
73. Arai, M., Inobe, T., Maki, K., Ikura, T. et al., Protein Sci. 2003, 12, 672-680.
74. Fisher, M. T., J. Biol. Chem. 1993, 268, 13777-13779.
75. Fisher, M. T., Biochemistry 1992, 31, 3955-3963.
76. Winston, R. L., Fitzgerald, M. C., Mass Spectrom. Rev. 1997, 16, 165-179.
77. O'Reilly, C., Turner, P. D., J. Appl. Microbiol. 2003, 95, 1161-1174.
78. Sarioglu, H., Lottspeich, F., Walk, T., Jung, G., Eckerskorn, C., Electrophoresis 2000, 21, 2209-2218.