AFLP-based genetic linkage map of marine shrimp Penaeus (Fenneropenaeus) chinensis

Aquaculture

Volumn 261, Issue 2, 2006, Pages 463-472

  Li, Zhaoxia ^a,b,c   Li, Jian ^a,b   Wang, Qingyin ^a   He, Yuying ^a,b   Liu, Ping ^a  

^a AGRO ENVIRONMENTAL PROTECTION INSTITUTE   (China)

^b QINGDAO AGRICULTURAL UNIVERSITY   (China)

^c OCEAN UNIVERSITY OF CHINA   (China)

Author keywords

AFLP; Linkage map; Penaeus (Fenneropenaeus) chinensis

Indexed keywords

GENETIC ANALYSIS; GENETIC MARKER; MAPPING; SHRIMP CULTURE;

DECAPODA (CRUSTACEA); FENNEROPENAEUS CHINENSIS;

EID: 33750525550     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2006.07.002     Document Type: Article

References (50)

1. Agresti J.J., Seki S., Cnaani A., Poompuang S., Hallerman E.M., Umiel N., Hulata G., Gall G.A.E., and May B. Breeding new strains of tilapia: development of an artificial center of origin and linkage map based on AFLP and microsatellite loci. Aquaculture 185 (2000) 43-56
2. Arcade A., Anselin F., Rampant P.F., Lesage M.C., Paques L.E., and Prat D. Application of AFLP, RAPD and ISSR markers to genetic mapping of European and Japanese larch. Theor. Appl. Genet. 100 (2000) 299-307
3. Bert P.F., Charmet G., Sourdille P., and Hayward M.D. A high-density molecular map for ryegrass (Lolium perenne). Theor. Appl. Genet. 99 (1999) 445-452
4. Cervera M.T., Storme V., Ivens B., Gusmao J., Liu B.H., Hostyn V., Van Slycken J., Van Montagu M., and Boerjan W. Dense genetic linkage maps of three Populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers. Genetics 158 (2001) 787-809
5. Chakravarti A., Lasher L.K., and Reefer J.E. A maximum likelihood for estimating genome length using genetic linkage data. Genetics 128 (1991) 175-182
6. Chiou T.T., Wu J.L., Chen T.T., and Lu J.K. Molecular cloning and characterization of cDNA of penaeidin-like antimicrobial peptide from tiger shrimp (Penaeus monodon). Mar. Biotechnol. 7 2 (2005) 119-127
7. Chow S., Dougherty W.J., and Sandifer P.A. Meiotic chromosome complements and nuclear DNA contents of four species of shrimps of the genus Penaeus. J. Crustac. Biol. 10 (1990) 29-36
8. Coimbra M.R.M., Kobayashi K., Koretsugu S., Hasegawa O., Ohara E., Ozaki A., Sakamoto T., Naruse K., and Okamoto N. A genetic linkage map of the Japanese flounder, Paralichthys olivaceus. Aquaculture 220 (2003) 203-218
9. Cruz P., Ibarra A.M., Mejia-Ruiz H., Gaffney P.M., and Perez-Enriquez R. Genetic variability assessed by microsatellites in a breeding program of Pacific white shrimp (Litopenaeus vannamei). Mar. Biotechnol. 6 2 (2004) 157-164
10. Deng J., Yie C., and Liu Y. Shrimp in Bohai Sea and Yellow Seas and Its Resource Management (1990), Ocean Publishing House, Beijing, China (in Chinese)
11. Fishman L., Kelly A.J., Morgan E., and Willis J.H. A genetic map in the Mimulus guttatus species complex reveals transmission ratio distortion due to heterospecific interactions. Genetics 159 (2001) 1701-1716
12. Grattapaglia D., and Sederoff R. Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross mapping strategy and RAPD marker. Genetics 137 (1994) 1121-1137
13. Jarasrassamee B., Supungul P., Panyim S., Klinbunga S., Rimphanichayakit V., and Tassanakajon A. Recombinant expression and characterization of five-domain Kazal-type serine proteinase inhibitor of black tiger shrimp (Penaeus monodon). Mar. Biotechnol. 7 1 (2005) 46-52
14. Khoo G., Lim M.H., Suresh H., Gan D.K., Lim K.F., Chen F., Chan W.K., Lim T.M., and Phang V.P. Genetic linkage maps of the guppy (Poecilia reticulata): assignment of RAPD markers to multipoint linkage groups. Mar. Biotechnol. 5 3 (2003) 279-293
15. Kocher T.D., Lee W.J., Sobolewska H., Penman D., and McAndrew B. A genetic linkage map of a cichlid fish, the tilapia Oreochromis niloticus. Genetics 148 (1998) 1225-1232
16. Li L., and Guo X. AFLP-based genetic linkage maps of the Pacific oyster Crassostrea gigas Thunberg. Mar. Biotechnol. 6 (2004) 26-36
17. Li Y., Byrne K., Miggiano E., Whan V., Moore S., Keys S., Crocos P., Preston N., and Lehnert S. Genetic mapping of the Kuruma prawn Penaeus japonicus using AFLP markers. Aquaculture 219 (2003) 143-156
18. Li J., Liu P., He Y., Song Q., Mu N., and Wang Y. Artificial selection in the new breed of Fenneropenaeus chinensis named "Yellow Sea 1" based on fast growth trait. J. Fish. China 29 (2005) 1-5 (in Chinese)
19. Li L., Xiang J., Liu X., Zhang Y., Dong B., and Zhang X. Construction of AFLP-based genetic linkage map for Zhikong scallop, Chlamys farrere Jones et Preston and mapping of sex-linked markers. Aquaculture 245 (2005) 63-73
20. Liu Z.J., and Cordes J.F. DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238 (2004) 1-37
21. 2 and backcross hybrids. Mol. Gen. Genet. 258 (1998) 260-268
22. Liu Z.J., Karsi A., Li P., Cao D., and Dunham R. An AFLP-based genetic linkage map of Channel catfish (Ictalurus punctatus) constructed by using an interspecific hybrid resource family. Genetics 165 (2003) 687-694
23. Liu F., Liu Y., Li F., Dong B., and Xiang J. Molecular cloning and expression profile of putative antilipopolysaccharide factor in Chinese shrimp (Fenneropenaeus chinensis). Mar. Biotechnol. 7 6 (2005) 600-608
24. Lundin M., Mikkelsen B., Moran P., Martinez J.L., and Syed M. Cosmid clones from Atlantic salmon: physical genome mapping. Aquaculture 173 (1999) 59-64
25. Marques C.M., Araujo J.A., Ferreria J.G., Whetten R.O., Malley D.M., Liu B., and Sederoff R. AFLP genetic maps of Eucalyptus globules and E. tereticornis. Theor. Appl. Genet. 90 (1998) 1119-1127
26. Meehan D., Xu Z., Zuniga G., and Alcivar-Warren A. High frequency and large number of polymorphic microsatellites in cultured shrimp, Penaeus (Litopenaeus) vannamei. Mar. Biotechnol. 5 4 (2003) 311-330
27. Merril C.R., Switzer R.C., and Van Keuren M.L. Trace polypeptides in cellular extracts and human body fluids detected by two-dimensional electrophoresis and a highly sensitive silver stain. Proc. Natl. Acad. Sci. U. S. A. 76 (1979) 4335-4339
28. Moen T., Hoyheim B., Munck H., and Gomez-Raya L. A linkage map of Atlantic salmon (Salmo salar) reveals an uncommonly large difference in recombination rate between the sexes. Anim. Genet. 35 (2004) 81-92
29. Moore S.S., Whan V., Davis G.P., Byrne K., Hetzel D.J.S., and Preston N. The development and application of genetic markers for the Kuruma prawn Penaeus japonicus. Aquaculture 173 (1999) 19-32
30. Norris A.T., Bradley D.G., and Cunningham E.P. Parentage and relatedness determination in farmed Atlantic salmon Salmo salar using microsatellite markers. Aquaculture 182 (2000) 73-83
31. Ohara E., Nishimura T., Nagakura Y., Sakamoto T., Mushiake K., and Okamoto N. Genetic linkage maps of two yellowtails (Seriola quinqueradiata and Seriola lalandi). Aquaculture 244 (2005) 41-48
32. Pérez F., Erazo C., Zhinaula M., Volckaert F., and Calderón J. A sex-specific linkage map of the white shrimp Penaeus (Litopenaeus) vannamei based on AFLP markers. Aquaculture 242 (2004) 105-118
33. Pérez F., Ortiz J., Zhinaula M., Gonzabay C., Calderon J., and Volckaert F.A. Development of EST-SSR markers by data mining in three species of shrimp: Litopenaeus vannamei, Litopenaeus stylirostris, and Trachypenaeus birdy. Mar. Biotechnol. 7 5 (2005) 554-569
34. Podsiadlowski L., and Bartolomaeus T. Organization of the mitochondrial genome of Mantis shrimp Pseudosquilla ciliate (Crustacea: Stomatopoda). Mar. Biotechnol. 7 6 (2005) 618-624
35. Poompuang S., and Na-Nakorn U. A preliminary genetic map of walking catfish (Clarias macrocephalus). Aquaculture 232 (2004) 195-203
36. Scalfi M., Troggio M., Piovani P., Leonardi S., Magnaschi G., Vendramin G.G., and Menozzi P. A RAPD, AFLP and SSR linkage map, and QTL analysis in European beech Fagus sylvatica L. Theor. Appl. Genet. 108 (2004) 433-441
37. Strauss W.M. Preparation of genomic DNA from mammalian tissues. In: Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Seidman J.G., Smith J.A., Struhl K., and Chanda V.B. (Eds). Current Protocol In Molecular Biology (1989), John Wiley and Sons, New York 221-222
38. Terauchi R., and Kahl G. Mapping of the Dioscorea toloro genome: AFLP markers linked to sex. Genome 42 (1999) 752-762
39. Valles-Jimenez R., Cruz P., and Perez-Enriquez R. Population genetic structure of Pacific white shrimp (Litopenaeus vannamei) from Mexico to Panama: microsatellite DNA variation. Mar. Biotechnol. 6 5 (2004) 475-484
40. Voorrips, R.E., 2001. MapChart Version 2.0: Windows Software for the Graphical Presentation of Linkage Maps and QTLs. Plant Research International, Wageningen, The Netherlands.
41. Vos P., Hogers R., and Bleeker M. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23 (1995) 4407-4414
42. Waldbieser G.C., Bosworth B.G., Nonneman D.J., and Wolters W.R. A microsatellite-based genetic map for channel catfish. Genetics 158 (2001) 727-734
43. Wang Q.Y. The shrimp farming industry in China: past development, present status and perspectives on the future. In: Browdy C.L., and Hopkins J.S. (Eds). Swimming Through Troubled Water. Proceedings of the Special Session On Shrimp Farming. Aquaculture vol. 95 (1995), World Aquaculture Society, Baton Rouge, Louisiana, USA 1-12
44. Wang Q.Y., and Wang Q. Recent trends in China's aquaculture industry. AQUACulture AsiaPacific vol. 1 (2005) 18-20
45. Watanabe T., Fujita H., Yamasaki K., Seki S., and Taniguchi N. Preliminary study on linkage mapping based on microsatellite DNA and AFLP markers using homozygous clonal fish in ayu (Plecoglossus altivelis). Mar. Biotechnol. 6 (2004) 327-334
46. Wilson K.J., Li Y., Whan V.A., Lehnert S.A., Byrne K., Moore S.S., Pongsomboon S., Tassanakajon A., Rosenberg G., Ballment E., Fayazi Z., Swan J., Kenway M., and Benzie J. Genetic mapping of the black tiger shrimp Penaeus monodon with amplified fragment length polymorphisms. Aquaculture 204 (2002) 297-309
47. Wu S., Collins G., and Sedgley M. A molecular linkage map of olive (Olea europaea L.) based on RAPD, microsatellite, and SCAR markers. Genome 47 (2004) 26-35
48. Young W.P., Wheeler P.A., Coryell V.H., Keim P., and Thorgaard G.H. A detailed linkage map of rainbow trout produced using doubled haploids. Genetics 48 (1998) 839-850
49. Yu Z., and Guo X. Genetic linkage map of the eastern oyster Crassotrea virginica Gmelin. Biol. Bull. 204 (2003) 327-338
50. Zhang T.S., Liu P., Meng X.H., Wang W.J., Kong J., and Wang Q.Y. Common microsatellite primers for molecular markers in different shrimp species. Chin. High Technol. Lett. 11 (2003) 80-85 (in Chinese)