Genetic linkage maps of the guppy (Poecilia reticulata): Assignment of RAPD markers to multipoint linkage groups

Marine Biotechnology

Volumn 5, Issue 3, 2003, Pages 279-293

  Khoo, Gideon ^a   Lim, Meng Huat ^a   Suresh, Haridas ^a   Gan, Damien K Y ^a   Lim, Kok Fang ^a   Chen, Fan ^a   Chan, Woon Khiong ^a   Lim, Tit Meng ^a   Phang, Violet P E ^a  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

Author keywords

Guppy; Linkage maps; Phenotypic markers; Poecilia reticulata; RAPD markers

Indexed keywords

POPULATION GENETICS;

ANIMALS; CHROMOSOME MAPPING; CROSSES, GENETIC; DNA PRIMERS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GENETIC MARKERS; GENOTYPE; POECILIA; POLYMORPHISM, GENETIC; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE;

PAGRUS MAJOR; POECILIA; POECILIA RETICULATA; TUXEDO;

EID: 0041974550     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-002-0072-3     Document Type: Article

References (49)

1. Agresti, J.J., Seki, S., Cnaani, A., Poompuang, S., Hallerman, E., Umiel, N., Hulata, G., Gall, G.A.E., and May, B. (2000). Breeding new strains of tilapia: development of an artificial center of origin and linkage map based on AFLP and microsatellite loci. Aquaculture 185:43-56.
2. Beeman, R.W., and Brown, S.J. (1999). RAPD-based genetic linkage maps of Tribolium castaneum. Genetics 153:333-338.
3. Dinesh, K.R., Lim, T.M., Chua, K.L., Chan, W.K., and Phang, V.P.E. (1993). RAPD analysis: an efficient method of DNA fingerprinting in fishes. Zool Sci 10:849-854.
4. Dinesh, K.R., Chan, W.K., Lim, T.M., and Phang, V.P.E. (1995). RAPD markers in fishes: an evaluation of resolution and reproducibility. Asia-Pac J Mol Biol Biotechnol 3:112-118.
5. Echt, C.S., and Nelson, C.D. (1997). Linkage mapping and genome length in eastern white pine (Pinus strobus L.). Theor Appl Genet 94:0131-0137.
6. Fernando, A.A., and Phang, V.P.E. (1990). Inheritance of red and blue caudal fin colorations in two domesticated varieties of the guppy, Poecilia reticulata. J Aqua Trop 5:209-217.
7. Foo, C.L., Dinesh, K.R., Lim, T.M., Chan, W.K., and Phang, V.P.E. (1995). Inheritance of RAPD markers in the guppy fish, Poecilia reticulata. Zool Sci 12:535-541.
8. García de León, F.J., Dallas, J.F., Chatain, B., Canonne, M., Versini J.J., and Bonhomme, F. (1995). Development and use of microsatellite markers in sea bass, Dicentrarchus labrax (Linnaeus, 1758) (Perciformes: Serranidae). Mol Mar Biol Biotechnol 4:62-68.
9. Gates, M.A., Kim, L., Egan, E.S., Cardozo, T., Sirotkin, H.I., Dougan, S.T., Lashkari, D., Abagyan, R. Schier, A.F., and Talbot, W.S. (1999). A genetic linkage map for zebrafish: comparative analysis and localization of genes and expressed sequences. Genome Res 9:334-347.
10. Hinegardner, R., and Rosen, D.E. (1972). Cellular DNA content and the evolution of teleostean fshes. Am Nat 106:621-644.
11. Hulbert, S.H., Ilott, T.W., Legg, E.J., Lincoln, S.J., Lander, E.J., and Michelmore, R.W. (1988). Genetic analysis of the fungus, Bremia lactucae, using restriction fragment polymorphisms. Genetics 120:947-958.
12. Hurme, P., and Savolainen, O. (1999). Comparison of homology and linkage of random amplified polymorphic DNA (RAPD) markers between individual trees of Scots pine (Pinus sylvestris L.). Mol Ecol 8:15-22.
13. Johnson, S.L., Midson, C.N., Ballinger E.W., and Postlethwait, J.H. (1994). Identification of RAPD primers that reveal extensive polymorphisms between laboratory strains of zebrafish. Genomics 19:152-156.
14. Kazianis, S., Morizot, D.C., McEntire, B.B., Nairn, R.S., and Borowsky, R.L. (1996). Genetic mapping in Xiphophorus hybrid fish: assignment of 43 AP-PCR/RAPD and isozyme markers to multipoint linkage groups. Genome Res 6:280-289.
15. Kesseli, R.V., Paran, I., and Michelmore, R.W. (1994). Analysis of a detailed genetic linkage map of Lactuca sativa (lettuce) constructed from RFLP and RAPD markers. Genetics 136:1435-1446.
16. Khoo, G., Lim, T.M., Chan, W.K., and Phang, V.P.E. (1999a). Genetic basis of the variegated tail pattern in the guppy, Poecilia reticulata. Zool Sci 16:431-437.
17. Khoo, G., Lim, T.M., Chan, W.K., and Phang, V.P.E. (1999b). Sex-linkage of the black caudal-peduncle and red tail genes in the Tuxedo strain of the guppy, Poecilia reticulata. Zool Sci 16:629-638.
18. Khoo, G., Lim, T.M., Chan, W.K., and Phang, V.P.E. (1999c). Linkage analysis and mapping of three sex-linked color pattern genes in the guppy, Poecilia reticulata. Zool Sci 16:893-903.
19. Khoo, G., Lim, K.F., Gan, D.K.Y., Chen, F., Chan, W.K., Lim, T.M., and Phang, V.P.E. (2002). Genetic diversity within and among feral populations and domesticated strains of the guppy (Poecilia reticulata) in Singapore. Mar Biotechnol (in press).
20. Kirpichnikov, V.S. (1981). Genetic Bases of Fish Selection. Translated by G.G. Gause. Berlin-Heidelberg, Germany: Springer-Verlag.
21. Kocher, T.D., Lee, W.J., Sobolewska, H., Penman, D., and McAndrew, B. (1998). A genetic linkage map of a cichlid fish, the tilapia (Oreochromis niloticus). Genetics 148:1225-1232.
22. Kosambi, D.D. (1944). The estimation of map distance from recombination values. Ann Eugen 12:172-175.
23. Kumar, L.S. (1999). DNA markers in plant improvement. Biotechnol Adv 17:143-182.
24. Laayouni, H., Santos, M., and Fontdevila, A. (2000). Toward a physical map of Drosophila buzzatii: use of randomly amplified polymorphic DNA polymorphisms and sequence-tagged site landmarks. Genetics 156:1797-1816.
25. Lin, J.-Z., and Ritland, K. (1996). Construction of a genetic map in the wild plant Mimulus using RAPD and isozyme markers. Genome 39:63-70.
26. Manly, K.F., and Olson, J.M. (1999). Overview of QTL mapping software and introduction to Map Manager QT. Mamm Genome 10:327-334. Available at http://mcbio.med.buffalo.edu/map-mgr.html.
27. Menotti-Raymond, M., David, V.A., Lyons, L.A., Schaffer, A.A., Tomlin, J.F., Hutton, M.K., and O'Brien, S.J. (1999). A genetic linkage map of microsatellites in the domestic cat (Felis catus). Genomics 57:9-23.
28. Michelmore, R.W., Paran, I., and Kesseli, R.V. (1991). Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc Natl Acad Sci USA 88:9828-9832.
29. Moore, S.S., Whan, V., Davis, G.P., Byrne, K., Hetzel, D.J.S., and Preston, N. (1999). The development and application of genetic markers for the Kuruma prawn Penaeus japonicus. Aquaculture 173:19-32.
30. Moretzsohn, M.C., Nunes, C.D.M., Ferreira, M.E., and Grattapaglia, D. (2000). RAPD linkage mapping of the shell thickness locus in oil palm (Elaeis guineensis Jacq.). Theor Appl Genet 100:63-70.
31. Morizot, D.C., Slaugenhaupt, S.A., Kallman, K.D., and Chakravarti, A. (1991). Genetic linkage map of fishes of the genus Xiphophorus (Teleostei: Poeciliidae). Genetics 127:399-410.
32. Nanda, I., Schartl, M., Epplen, J.T., Feichtinger, W., and Schmid, M. (1993). Primitive sex chromosomes in poeciliid fishes harbor simple repetitive DNA sequences. J Exp Zool 265:301-308.
33. Naruse, K., Fukamachi, S., Mitani, H., Kondo, M., Matsuoka, T., Kondo, S., Hanamura, N., Morita, Y., Hasegawa, K., Nishigaki, R., Shimada, A., Wada, H., Kusakabe, T., Suzuki, N., Kinoshita, M., Kanamori, A., Terado, T., Kimura, H., Nonaka, M., and Shima, A. (2000). A detailed linkage map of medaka, Oryzias latipes: comparative genomics and genome evolution. Genetics 154:1773-1784.
34. Ohtsuka, M., Makino, S., Yoda, Y., Wada, H., Naruse, K., Mitani, H., Shima, A., Ozato, K., Kimura, M., and Inoko, H. (1999). Construction of a linkage map of the medaka (Oryzias latipes) and mapping of the Da mutant locus defective in dorsoventral patterning. Genome Res 9:1277-1287.
35. Paran, I., and Michelmore, R.W. (1993). Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce. Theor Appl Genet 85:985-993.
36. Phang, V.P.E., and Fernando, A.A. (1991). Linkage analysis of the X-linked green tail and blue tail color genes in the guppy, Poecilia reticulata. Zool Sci 8:975-981.
37. Phang, V.P.E., Ng, L.N., and Fernando, A.A. (1989). Inheritance of the snakeskin color pattern in the guppy, Poecilia reticulata. J Hered 80:393-399.
38. Phang, V.P.E., Fernando, A.A., and Chia, E.W.K. (1990). Inheritance of the color patterns of the blue snakeskin and red snakeskin varieties of the guppy, Poecilia reticulata. Zool Sci 7:419-425.
39. Phang, V.P.E., Khoo, G., and Ang, S.P. (1999). Interaction between the autosomal recessive bar gene and the Y-linked snakeskin body (Ssb) pattern gene in the guppy, Poecilia reticulata. Zool Sci 16:905-908.
40. Postlethwait, J.H., Johnson, S.L., Midson, C.N., Talbot, W.S., Gates, M., Ballinger, E.W., Africa, D., Andrews, R., Carl, T., Eisen, J.S., Horne, S., Kimmel, C.B., Hutchinson, M., Jonhson, M., and Rodriguez, A. (1994). A genetic linkage map for the zebrafish. Science 264:699-703.
41. Reiter, W.S., Williams, J.G.K., Feldmann, K.A., Rafalski, J.A., Tingey, S.V., and Scolnik, P.A. (1992). Global and local genome mapping in Arabidopsis thaliana by using recombinant inbred lines and random amplified polymorphic DNAs. Proc Natl Acad Sci USA 89:1477-1481.
42. Rieseberg, L.H. (1996). Homology among RAPD fragments in interspecific comparisons. Mol Ecol 5:99-105.
43. Sakamoto, T., Danzmann, R.G., Gharbi, K., Howard, P., Ozaki, A., Khoo, S.K., Woram, R.A., Okamoto, N., Ferguson, M.M., Holm, L.E., Guyomard, R., and Hoyheim, B. (2000). A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates. Genetics 155:1331-1345.
44. Wada, H., Naruse, K., Shimada, A., and Shima, A. (1995). Genetic linkage map of a fish, the Japanese medaka Oryzias latipes. Mol Mar Biol Biotechnol 4:269-274.
45. Welsh, J., and McClelland, M. (1990). Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res 18:7213-7218.
46. Williams, J.G.K., Kubelik, A.R., Livak, K.J., Rafalski, J.A., and Tingey, S.V. (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18:6531-6535.
47. Winge, Ö. (1927). The location of eighteen genes in Lebistes reticulatus, J Genet 18:1-43.
48. Yasukochi, Y. (1998). A dense genetic map of the silkworm, Bombyx mori, covering all chromosomes based on 1018 molecular markers. Genetics 150:1513-1525.
49. 2 test. J R Stat Soc (Suppl) 1:217-235.