Functional study of hot pepper 26S proteasome subunit RPN7 induced by Tobacco mosaic virus from nuclear proteome analysis

Biochemical and Biophysical Research Communications

Volumn 351, Issue 2, 2006, Pages 405-411

  Lee, Boo Ja ^a   Kwon, Sun Jae ^a   Kim, Sung Kyu ^a   Kim, Ki Jeong ^a   Park, Chang Jin ^b   Kim, Young Jin ^a   Park, Ohkmae K ^a   Paek, Kyung Hee ^a  

^a Korea University   (South Korea)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

CaRPN7; EST database; Hot pepper; Hypersensitive response; Nuclear protein; Programmed cell death; Proteasome; Proteomics; Subcellular localization; TMV

Indexed keywords

APOPTOSIS; ARTICLE; CELL LINE; CELL NUCLEUS; CELLULAR DISTRIBUTION; COMPUTER PROGRAM; CONTROLLED STUDY; DATA BASE; GENE OVEREXPRESSION; GENE TARGETING; NONHUMAN; NUCLEOTIDE SEQUENCE; ONION; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN INTERACTION; PROTEOMICS; TOBACCO MOSAIC VIRUS;

AMINO ACID SEQUENCE; APOPTOSIS; CAPSICUM; CELL NUCLEUS; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; GENE EXPRESSION REGULATION, PLANT; MOLECULAR SEQUENCE DATA; ONIONS; PLANT LEAVES; PLANT PROTEINS; PROTEASOME ENDOPEPTIDASE COMPLEX; PROTEIN SUBUNITS; PROTEOME; RHIZOBIUM; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TOBACCO MOSAIC VIRUS;

AGROBACTERIUM; ALLIUM CEPA; CAPSICUM ANNUUM; CAPSICUM FRUTESCENS; TOBACCO MOSAIC VIRUS;

EID: 33750507926     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2006.10.071     Document Type: Article

References (41)

1. Park C.J., Kim K.J., Shin R., Park J.M., Shin Y.C., and Paek K.H. Pathogenesis-related protein 10 isolated from hot pepper functions as a ribonuclease in an antiviral pathway. Plant J. 37 (2004) 186-198
2. Dangl J.L., Ritter C., Gibbon M.J., Mur L.A., Wood J.R., Goss S., Mansfield J., Taylor J.D., and Vivian A. Functional homologs of the Arabidopsis RPM1 disease resistance gene in bean and pea. Plant Cell 4 (1992) 1359-1369
3. Hammond-Kosack K.E., and Jones J.D.G. Plant disease resistance genes. Annu. Rev. Plant Physiol. 48 (1997) 575-607
4. Greenberg J.T., and Yao N. The role and regulation of programmed cell death in plant-pathogen interactions. Cell Microbiol. 6 (2004) 201-211
5. Green D.R. Apoptotic pathways: paper wraps stone blunts scissors. Cell 102 (2000) 1-4
6. Jung E., Heller M., Sanchez J.C., and Hochstrasser D.F. Proteomics meets cell biology: the establishment of subcellular proteomes. Electrophoresis 21 (2000) 3369-3377
7. Bae M.S., Cho E.J., Choi E.Y., and Park O.K. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Plant J. 36 (2003) 652-663
8. Calikowski T.T., Meulia T., and Meier I. A proteomic study of the Arabidopsis nuclear matrix. J. Cell. Biochem. 90 (2003) 361-378
9. Glinski M., and Weckwerth W. The role of mass spectrometry in plant system biology. Mass Spectrom Rev. 25 (2006) 173-214
10. Konishi H., Ishiguro K., and Komatsu S. A proteomics approach towards understanding blast fungus infection of rice grown under different levels of nitrogen fertilization. Proteomics 1 (2001) 1162-1171
11. Rep M., Dekker H.L., Vossen J.H., de Boer A.D., Houterman P.M., Speijer D., Back J.W., de Koster C.G., and Cornelissen B.J. Mass spectrometric identification of isoforms of PR proteins in xylem sap of fungus-infected tomato. Plant Physiol. 130 (2002) 904-917
12. Park C.J., Shin R., Park J.M., Lee G.J., You J.S., and Paek K.H. Induction of pepper cDNA encoding a lipid transfer protein during the resistance response to Tobacco mosaic virus. Plant Mol. Biol. 48 (2002) 243-254
13. Wagner J.D.O., Chio T.J., and Jackson A.O. Extraction of nuclei from Sonchus yellow net rhabdovirus-infected plants yields a polymerase that synthesizes viral mRNAs and polyadenylated plus-strand leader RNA. J. Virol. 70 (1996) 468-477
14. Lee S., Lee E.J., Yang E.J., Lee J.E., Park A.R., Song W.H., and Park O.K. Proteomic identification of annexins, calcium-dependent membrane binding proteins that mediate osmotic stress and abscisic acid signal transduction in Arabidopsis. Plant Cell 16 (2004) 1378-1391
15. Huang X., and Madan A. CAP3: a DNA sequence assembly program. Genome Res. 9 (1999) 868-877
16. Matthiesen R., Lundsgaard M., Welinder K.G., and Bauw G. Interpreting peptide mass spectra by VEMS. Bioinformatics 19 (2003) 792-793
17. Kim M.J., Ham B.K., Kim H.R., Lee I.J., Kim Y.J., Ryu K.H., Park Y.I., and Paek K.H. In vitro and in planta interaction evidence between Nicotiana tabacum thaumatin-like protein 1 (TLP1) and Cucumber mosaic virus proteins. Plant Mol. Biol. 59 (2006) 981-994
18. Yang Y., Li R., and Qi M. In vivo analysis of plant promoters and transcription factors by agroinfiltration of tobacco leaves. Plant J. 22 (2000) 543-551
19. Belenghi B., Acconcia F., Trovato M., Perazzolli M., Bocedi A., Polticelli F., Ascenzi P., and Delledonne M. AtCYS1, a cystatin from Arabidopsis thaliana, suppresses hypersensitive cell death. Eur. J. Biochem. 270 (2003) 2593-2604
20. Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Seidman J.G., Smith J.A., and Struhl K. Short protocols in molecular biology (1995), Wiley, New York
21. Robers M.R., Salinas J., and Collinge D.B. 14-3-3 proteins and the response to abiotic and biotc stress. Plant Mol. Biol. 50 (2002) 1031-1039
22. Brandt J., Thordal-Christensen H., Vad K., Gregersen P.L., and Collinge D.B. A pathogen-induced gene of barley encodes a protein showing high similarity to a protein kinase regulator. Plant J. 2 (1992) 815-820
23. Geldner N., Friml J., Stierhof Y.D., Jurgens G., and Palme K. Auxin transport inhibitors block PIN1 cycling and vesicle trafficking. Nature 27 (2001) 425-428
24. Molendijk A.J., Ruperti B., and Palme K. Small GTPases in vesicle trafficking. Curr. Opin. Plant Biol. 7 (2004) 694-700
25. Surpin M., and Raikhel N. Traffic jams affect plant development and signal transduction. Nat. Rev. Mol. Cell Biol. 5 (2004) 100-109
26. Czernic P., Huang H.C., and Marco Y. Characterization of hsr201 and hsr515, two tobacco genes preferentially expressed during the hypersensitive reaction provoked by phytopathogenic bacteria. Plant Mol. Biol. 31 (1996) 255-265
27. Ralston L., Kwon S.T., Schoenbeck M., Ralston J., Schenk D.J., Coates R.M., and Chappell J. Cloning, heterologous expression, and functional characterization of 5-epi-aristolochene-1,3-dihydroxylase from tobacco (Nicotiana tabacum). Arch. Biochem. Biophys. 393 (2001) 222-235
28. +)/GTP-binding protein-controlled exocytosis in a plant cell. Proc. Natl. Acad. Sci. USA 94 (1997) 6565-6570
29. Gorlich D., Pante N., Kutay U., Aebi U., and Bischoff F.R. Nucleocytoplasmic transfort. Science 271 (1996) 1513-1518
30. Riera M., Redko Y., and Leung J. Arabidopsis RNA-binding protein UBA2a relocalizes into nuclear speckles in response to abscisic acid. FEBS Lett. 24 (2006) 4160-4165
31. Orlowski R.Z. The role of the ubiquitin-proteasome pathway in apoptosis. Cell Death Differ. 6 (1999) 303-313
32. Callis J., and Vierstra R.D. Protein degradation in signaling. Curr. Opin. Plant Biol. 3 (2000) 381-386
33. Yang P., Fu H., Walker J., Papa C.M., Smalle J., Ju Y.M., and Vierstra R.D. Purification of the Arabidopsis 26S proteasome. J. Biol. Chem. 20 (2004) 6401-6413
34. Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215 (1990) 403-410
35. Xie Y., and Varshavsky A. Physical association of ubiquitin ligases and the 26S proteasome. Proc. Natl. Acad. Sci. USA 97 (2000) 2497-2502
36. Yang P., Fu H., Walker J., Papa C.M., Smalle J., Ju Y.M., and Vierstra R.D. Purification of the Arabidopsis 26S proteasome: biochemical and molecular analyses revealed the presence of multiple isoforms. J. Biol. Chem. 279 (2004) 6401-6413
37. Glickman M.H. Getting in and out of the proteasome. Semin. Cell Dev. Biol. 11 (2000) 149-158
38. Takeuchi J., Fujimuro M., Yokosawa H., and Tanaka K. A. Toh-e, Rpn9 is required for efficient assembly of the yeast 26S proteasome. Mol. Cell Biol. 196 (1999) 575-584
39. Kim M., Ahn J.W., Jin U.H., Choi D., Paek K.H., and Pai H.S. Activation of the programmed cell death pathway by inhibition of proteasome function in plants. J. Biol. Chem. 278 (2003) 19406-19415
40. Fu H., Girod P.A., Doelling J.H., van Nocker S., Hochstrasser M., Finley D., and Vierstra R.D. Structure and functional analysis of the 26S proteasome subunits from plants. Mol. Biol. Rep. 26 (1999) 137-146
41. Lee B.J., Park C.J., Kim S.K., Kim K.J., and Paek K.H. In vivo binding of hot pepper bZIP transcription factor CabZIP1 to the G-box region of pathogenesis-related protein 1 promoter. Biochem. Biophys. Res. Commun. 344 (2006) 55-62