Use of routinely collected amniotic fluid for whole-genome expression analysis of polygenic disorders

Clinical Chemistry

Volumn 52, Issue 11, 2006, Pages 2013-2020

  Nagy, Gyula Richárd ^a   Gyõrffy, Balázs ^a   Galamb, Orsolya ^a   Molnár, Béla ^a   Nagy, Bálint ^a   Papp, Zoltán ^a  

^a SEMMELWEIS UNIVERSITY   (Hungary)

Author keywords

[No Author keywords available]

Indexed keywords

FOLIC ACID; MESSENGER RNA;

ADULT; AMNIOCENTESIS; AMNION FLUID; AMNION FLUID ANALYSIS; ARTICLE; BENE GENE; CLINICAL ARTICLE; CONTROLLED STUDY; DIET SUPPLEMENTATION; DNA MICROARRAY; FEMALE; FETUS; FETUS ECHOGRAPHY; GENE; GENE EXPRESSION; GENETIC DISORDER; GENOME; HUMAN; LST1 GENE; MATERNAL AGE; NEURAL TUBE DEFECT; PATHOGENESIS; PILOT STUDY; PREGNANCY; RNA HYBRIDIZATION; RNA ISOLATION; SLA GENE;

AMNIOTIC FLUID; FEMALE; GENOME; HUMANS; MULTIFACTORIAL INHERITANCE; NEURAL TUBE DEFECTS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PILOT PROJECTS; PREGNANCY; RNA, MESSENGER;

EID: 33750463417     PISSN: 00099147     EISSN: None     Source Type: Journal    
DOI: 10.1373/clinchem.2006.074971     Document Type: Article

References (29)

1. Marton T, Bán Z, Papp Z. 2004. Post-termination fetopathology. In: Kurjak A, Chervenak FA, eds. Donald School Textbook of Ultrasound in Obstetrics and Gynecology, New Delhi: Jaypee Brothers Medical Publishers (P) Ltd., 2004:387.
2. Larrabee PB, Johnson KL, Lai C, Ordovas J, Cowan JM, Tantravahi U, et al. Global gene expression analysis of the living human fetus using cell-free messenger RNA in amniotic fluid. JAMA 2005;293: 836-42.
3. Hahn S, Holzgreve W. Prenatal diagnosis using fetal cells and cell-free fetal DNA in maternal blood: what is currently feasible? Clin Obst Gynec 2002;45:649-56.
4. Bianchi DW. Prenatal diagnosis through the analysis of fetal cells and cell-free nucleic acids in the maternal circulation. In: Milunsky A, ed. Genetic Disorders and the Fetus, 5th ed. Baltimore: The Johns Hopkins University Press, 2004:1034-53.
5. Nagy GR, Bán Z, Sipos F, Beke A, Papp C, Papp Z. Isolation of epsilon-haemoglobin-chain positive fetal cells with micromanipulation for prenatal diagnosis. Prenat Diagn 2005;25:398-402.
6. Lockhart DJ, Winzeler EA. Genomics, gene expression, and DNA arrays. Nature 2000;405:827-36.
7. R Development Core Team (2004). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http://www.R-project.org (accessed June 10, 2006).
8. Tumor Analysis Best Practices Working Group. Expression profiling: best practices for data generation and interpretation in clinical trials. Nat Rev Genet 2004;5:229-37.
9. Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, et al. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 2003; 4:249-64.
10. Tibshiran R, Hastie T, Narasimhan B, Chu G. Diagnosis of multiple cancer types by shrunken centroids of gene expression. Proc Natl Acad Sci U S A 2002;99:6567-72.
11. Sturn A, Quackenbush J, Trajanoski Z. Genesis: cluster analysis of microarray data. Bioinformatics 2002;18:207-8.
12. Van Dyke DL. Amniotic fluid cell culture. In: Milunsky A, ed. Genetic Disorders and the Fetus, 5th ed. Baltimore: The Johns Hopkins University Press, 2004:154-78.
13. Greenebaum E, Mansukhani MM, Heller DS, Timor-Tristsch I. Open neural tube defects: immunocytochemical demonstration of neuroepithelial cells in amniotic fluid. Diagn Cytopathol 1997;16: 143-4.
14. Tsai MS, Hwang SM, Tsai YL, Cheng FC, Lee JL, Chang YJ. Clonal amniotic fluid-derived stem cells express characteristics of both mesenchymal and neural stem cells. Biol Reprod 2006;74:545-51.
15. Shostak KO, Dmitrenko W, Vudmaska MI, Naidenov VG, Beletskii AV, Malisheva TA, et al. Patterns of expression of TSC-22 protein in astrocytic gliomas. Exp Oncol 2005;27:314-8.
16. Richter JD. Think globally, translate locally: what mitotic spindles and neuronal synapses have in common. Proc Natl Acad Sci U S A 2001;98:7069-71.
17. De Marco MC, Kremer L, Albar JP, Martinez-Menarguez JA, Ballesta J, Garcia-Lopez MA, et al. BENE, a novel raft-associated protein of the MAL proteolipid family, interacts with caveolin-1 in human endothelial-like ECV304 cells. J Biol Chem 2001;276: 23009-17.
18. Doudney K, Stanier P. Epithelial cell polarity genes are required for neural tube closure. Am J Med Genet Part C (Semin Med Genet) 2005;135C:42-7.
19. Sosinowski T, Pandey A, Dixit VM, Weiss A. Src-like adaptor protein (SLAP) is a negative regulator of T cell receptor signalling. J Exp Med 2000;191:463-74.
20. Dragone LL, Myers MD, White C, Sosinowski T, Weiss A. Src-like adaptor protein regulates B cell development and function. J Immunol 2006;176:335-45.
21. Roche S, Alonso G, Kazlauskas A, Dixit VM, Courtneidge SA, Pandey A. Src-like adaptor protein (Slap) is a negative regulator of mitogenesis. Curr Biol 1998;8:975-8.
22. Mulcahy H, O'Rourke KP, Adams C, Molloy MG, O'Gara F. LST1 and NCR3 expression in autoimmune inflammation and in response to IFN-gamma, LPS, and microbial infection. Immunogenetics 2005;17:1-11.
23. Hatta M, Nagai H, Okino K, Onda M, Yoneyama K, Ohta Y, et al. Down-regulation of members of glycolipid-enriched membrane raft gene family, MAL and BENE, in cervical squamous cell cancers. J Obstet Gynaecol Res 2004;30:53-8.
24. Mutchinick O, Orozco E, Lisker R, Babinsky V, Nunez C. [Risk factors associated with neural tube defects: exposure during the first trimester of gestation] [Article in Spanish] Gac Med Mex 1990;126:233-4.
25. Sharma JB, Gulati N. Potential relationship between dengue fever and neural tube defects in a northern district of India. Int J Gynaecol Obstet 1992;39:291-5.
26. Suarez L, Felkner M, Hendricks K. The effect of fever, febrile illnesses, and heat exposures on the risk of neural tube defects in a Texas-Mexico border population. Birth Defects Res A Clin Mol Teratol 2004;70:815-9.
27. Li Z, Ren A, Zhang L, Guo Z, Li Z. A population-based case-control study of risk factors for neural tube defects in four high-prevalence areas of Shanxi province, China. Paediatr Perinat Epidemiol 2006;20:43-53.
28. Mitchell LE. Epidemiology of neural tube defects. Am J Med Genet Part C (Semin Med Genet) 2005;135C:88-94.
29. Boyles AL, Hammock P, Speer MC. Candidate gene analysis in human neural tube defects. Am J Med Genet Part C (Semin Med Genet) 2005;135:9-23.