Lipidic Sponge Phase Crystallization of Membrane Proteins

Journal of Molecular Biology

Volumn 364, Issue 1, 2006, Pages 44-53

  Wadsten, Pia ^a   Wöhri, Annemarie B ^a   Snijder, Arjan ^a   Katona, Gergely ^b   Gardiner, Alastair T ^c   Cogdell, Richard J ^c   Neutze, Richard ^a   Engström, Sven ^a  

^a CHALMERS UNIVERSITY OF TECHNOLOGY   (Sweden)

^b INSTITUT DE BIOLOGIE STRUCTURALE   (France)

^c UNIVERSITY OF GLASGOW   (United Kingdom)

Author keywords

lipid phase transitions; monoolein (MO); protein crystallization; reaction centre from Rhodobacter sphaeroides (RCsph); sponge phase

Indexed keywords

CRYOPROTECTIVE AGENT; MEMBRANE PROTEIN; TRIACYLGLYCEROL LIPASE;

ARTICLE; CRYSTALLIZATION; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN DOMAIN; RADIATION SCATTERING; RHODOBACTER SPHAEROIDES; ROBOTICS;

RHODOBACTER SPHAEROIDES;

EID: 33750328436     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2006.06.043     Document Type: Article

References (57)

1. Iwata S. Methods & Results in Crystallization of Membrane Proteins (2002), International University Line, La Jolla, CA
2. Landau E.M., and Rosenbusch J.P. Lipidic cubic phases: a novel concept for the crystallization of membrane proteins. Proc. Natl Acad. Sci. USA 93 (1996) 14532-14535
3. Larsson K. Two cubic phases in monoolein-water system. Nature 304 (1983) 664
4. Longley W., and McIntosh T.J. A bicontinuous tetrahedral structure in a liquid-crystalline lipid. Nature 303 (1983) 612-614
5. Lindblom G., Larsson K., Johansson L., Fontell K., and Forsen S. The cubic phase of monoglyceride-water systems. Arguments for a structure based upon lamellar bilayer units. J. Am. Chem. Soc. 101 (1979) 5465-5470
6. Katona G., Andreasson U., Landau E.M., Andreasson L.E., and Neutze R. Lipidic cubic phase crystal structure of the photosynthetic reaction centre from Rhodobacter sphaeroides at 2.35 Å resolution. J. Mol. Biol. 331 (2003) 681-692
7. Belrhali H., Nollert P., Royant A., Menzel C., Rosenbusch J.P., Landau E.M., and Pebay-Peyroula E. Protein, lipid and water organization in bacteriorhodopsin crystals: a molecular view of the purple membrane at 1.9 Å resolution. Structure 7 (1999) 909-917
8. Luecke H., Schobert B., Richter H.T., Cartailler J.P., and Lanyi J.K. Structure of bacteriorhodopsin at 1.55 Å resolution. J. Mol. Biol. 291 (1999) 899-911
9. Pebay-Peyroula E., Rummel G., Rosenbusch J.P., and Landau E.M. X-ray structure of bacteriorhodopsin at 2.5 Å from microcrystals grown in lipidic cubic phases. Science 277 (1997) 1676-1681
10. Kolbe M., Besir H., Essen L.O., and Oesterhelt D. Structure of the light-driven chloride pump halorhodopsin at 1.8 Å resolution. Science 288 (2000) 1390-1396
11. Luecke H., Schobert B., Lanyi J.K., Spudich E.N., and Spudich J.L. Crystal structure of sensory rhodopsin II at 2.4 Å: Insights into color tuning and transducer interaction. Science 293 (2001) 1499-1503
12. Royant A., Nollert P., Edman K., Neutze R., Landau E.M., Pebay-Peyroula E., and Navarro J. X-ray structure of sensory rhodopsin II at 2.1 Å resolution. Proc. Natl Acad. Sci. USA 98 (2001) 10131-10136
13. Gordeliy V.I., Labahn J., Moukhametzianov R., Efremov R., Granzin J., Schlesinger R., et al. Molecular basis of transmembrane signalling by sensory rhodopsin II-transducer complex. Nature 419 (2002) 484-487
14. Vogeley L., Sineshchekov O.A., Trivedi V.D., Sasaki J., Spudich J.L., and Luecke H. Anabaena sensory rhodopsin: a photochromic color sensor at 2.0 Å. Science 306 (2004) 1390-1393
15. Chiu M.L., Nollert P., Loewen M.C., Belrhali H., Pebay-Peyroula E., Rosenbusch J.P., and Landau E.M. Crystallization in cubo: general applicability to membrane proteins. Acta. Crystallog. sect. D 56 (2000) 781-784
16. Misquitta L.V., Misquitta Y., Cherezov V., Slattery O., Mohan J.M., Hart D., et al. Membrane protein crystallization in lipidic mesophases with tailored bilayers. Structure 12 (2004) 2113-2124
17. Luecke H., Schobert B., Cartailler J.P., Richter H.T., Rosengarth A., Needleman R., and Lanyi J.K. Coupling photoisomerization of retinal to directional transport in bacteriorhodopsin. J. Mol. Biol. 300 (2000) 1237-1255
18. Edman K., Nollert P., Royant A., Belrhali H., Pebay-Peyroula E., Hajdu J., et al. High-resolution X-ray structure of an early intermediate in the bacteriorhodopsin photocycle. Nature 401 (1999) 822-826
19. Royant A., Edman K., Ursby T., Pebay-Peyroula E., Landau E.M., and Neutze R. Helix deformation is coupled to vectorial proton transport in the photocycle of bacteriorhodopsin. Nature 406 (2000) 645-648
20. Neutze R., Pebay-Peyroula E., Edman K., Royant A., Navarro J., and Landau E.M. Bacteriorhodopsin: a high-resolution structural view of vectorial proton transport. Biochim. Biophys. Acta 1565 (2002) 144-167
21. Luecke H., Schobert B., Richter H.T., Cartailler J.P., and Lanyi J.K. Structural changes in bacteriorhodopsin during ion transport at 2 Å resolution. Science 286 (1999) 255-261
22. Edman K., Royant A., Nollert P., Maxwell C.A., Pebay-Peyroula E., Navarro J., et al. Early structural rearrangements in the photocycle of an integral membrane sensory receptor. Structure 10 (2002) 473-482
23. Moukhametzianov R., Klare J.P., Efremov R., Baeken C., Goeppner A., Labahn J., Engelhard M., Bueldt G., and Gordeliy V.I. Development of the signal in sensory rhodopsin and its transfer to the cognate transducer. Nature 440 (2006) 115-119
24. Katona G., Snijder A., Gourdon P., Andreasson U., Hansson O., Andreasson L.E., and Neutze R. Conformational regulation of charge recombination reactions in a photosynthetic bacterial reaction center. Nature Struct. Mol. Biol. 12 (2005) 630-631
25. Nollert P., Qiu H., Caffrey M., Rosenbusch J.P., and Landau E.M. Molecular mechanism for the crystallization of bacteriorhodopsin in lipidic cubic phases. FEBS Letters 504 (2001) 179-186
26. Engblom J., Miezis Y., Nylander T., Razumas V., and Larsson K. On the swelling of monoolein liquid-crystalline aqueous phases in the presence of distearoylphosphatidylglycerol. Prog. Coll. Pol. Sci. S 116 (2000) 9-15
27. Sparr E., Wadsten P., Kocherbitov V., and Engström S. The effect of bacteriorhodopsin, detergent and hydration on the cubic-to-lamellar phase transition in the monoolein-distearoyl phosphatidyl glycerol-water system. Biochim. Biophys. Acta 1665 (2004) 156-166
28. 3) phases in the solvent-monoolein-water system. Prog. Coll. Pol. Sci. S 108 (1998) 93-98
29. Evertsson H., Stilbs P., Lindblom G., and Engström S. NMR self diffusion measurements of the monooleoylglycerol/poly ethylene glycol/water L3 phase. Colloid. Surface B 26 (2002) 21-29
30. Imberg A., Evertsson H., Stilbs P., Kriechbaum M., and Engström S. On the self-assembly of monoolein in mixtures of water and a polar aprotic solvent. J. Phys. Chem. B 107 (2003) 2311-2318
31. Cherezov V., Clogston J., Papiz M.Z., and Caffrey M. Room to move: crystallizing membrane proteins in swollen lipidic mesophases. J. Mol. Biol. 357 (2006) 1605-1618
32. 3) phase. Colloid. Surface A 228 (2003) 17-23
33. Cherezov V., Fersi H., and Caffrey M. Crystallization screens: compatibility with the lipidic cubic phase for in meso crystallization of membrane proteins. Biophys. J. 81 (2001) 225-242
34. Caffrey M. A lipid's eye view of membrane protein crystallization in mesophases. Curr. Opin. Struct. Biol. 10 (2000) 486-497
35. Faham S., and Bowie J.U. Bicelle crystallization: a new method for crystallizing membrane proteins yields a monomeric bacteriorhodopsin structure. J. Mol. Biol. 316 (2002) 1-6
36. Hiemenz P.C., and Rajagopalan R. Principles of Colloid and Surface Chemistry. 3rd edit. (1997), Marcel Dekker, New York
37. Briggs J., Chung H., and Caffrey M. The temperature-composition phase diagram and mesophase structure characterization of the monoolein/water system. J. Phys. II 6 (1996) 723-751
38. Lei N., Safinya C.R., Roux D., and Liang K.S. Synchrotron X-ray-scattering studies on the sodium dodecyl sulfate-water-pentanol-dodecane L3 sponge phase. Phys. Rev. E 56 (1997) 608-613
39. Gomati R., Bouguerra N., and Gharbi A. Stability and swelling behaviour of a concentrated sponge phase. Physica B 299 (2001) 101-107
40. Gotter M., Strey R., Olsson U., and Wennerström H. Fusion and fission of fluid amphiphhilic bilayers. Faraday. Discuss. 129 (2005) 327-338
41. Nollert P., and Landau E.M. Enzymatic release of crystals from lipidic cubic phases. Biochem. Soc. Trans. 26 (1998) 709-713
42. Schneider T.R. A genetic algorithm for the identification of conformationally invariant regions in protein molecules. Acta. Crystallog. sect. D 58 (2002) 195-208
43. Arnoux B., Gaucher J.F., Ducruix A., and Reiss-Husson F. Structure of the photochemical reaction centre of a spheroidene-containing purple-bacterium, Rhodobacter sphaeroides Y, at 3 Å resolution. Acta. Crystallog. sect. D 51 (1995) 368-379
44. Roszak A.W., McKendrick K., Gardiner A.T., Mitchell I.A., Isaacs N.W., Cogdell R.J., et al. Protein regulation of carotenoid binding gatekeeper and locking amino acid residues in reaction centers of Rhodobacter sphaeroides. Structure 12 (2004) 765-773
45. Stowell M.H., McPhillips T.M., Rees D.C., Soltis S.M., Abresch E., and Feher G. Light-induced structural changes in photosynthetic reaction center: implications for mechanism of electron-proton transfer. Science 276 (1997) 812-816
46. Cherezov V., Peddi A., Muthusubramaniam L., Zheng Y.F., and Caffrey M. A robotic system for crystallizing membrane and soluble proteins in lipidic mesophases. Acta. Crystallog. sect. D 60 (2004) 1795-1807
47. Nollert P. From test tube to plate: a simple procedure for the rapid preparation of microcrystallization experiments using the cubic phase method. J. Appl. Crystallog. 35 (2002) 637-640
48. Ridell, A. (2003). Characterisation of aqueous solutions, liquid crystals and solid state of non-ionic polymers in association with amphiphiles and drugs, thesis, Uppsala University.
49. Farhoosh R., Chynwat V., Gebhard R., Lugtenburg J., and Frank H.A. Triplet energy transfer between the primary donor and carotenoids in Rhodobacter sphaeroides R-26.1 reaction centers incorporated with spheroidene analogs having different extents of pi-electron conjugation. Photoch. Photobio. Sci. 66 (1997) 97-104
50. Steller I., Bolotovsky R., and Rossmann M.G. An algorithm for automatic indexing of oscillation images using Fourier analysis. J. Appl. Crystallog. 30 (1997) 1036-1040
51. Kabsch W. Evaluation of single-crystal X-ray diffraction data from a position-sensitive detector. J. Appl. Crystallog. 21 (1988) 916-924
52. Collaborative Computational Project Number 4. The CCP4 suite: programs for protein crystallography. Acta. Crystallog. sect. D 50 (1994) 760-763
53. Brunger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., et al. Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta. Crystallog. sect. D 54 (1998) 905-921
54. Jones T.A., and Kjeldgaard M. Electron-density map interpretation. Method. Enzymol. 277 (1997) 173-208
55. Murshudov G.N., Vagin A.A., and Dodson E.J. Refinement of macromolecular structures by the maximum-likelihood method. Acta. Crystallog. sect. D 53 (1997) 240-255
56. Laskowski R.A., MacArthur M.W., Moss D.S., and Thornton J.M. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallog. 26 (1993) 283-291
57. Krissinel E., and Henrick K. Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta. Crystallog. sect. D 60 (2004) 2256-2268