메뉴 건너뛰기




Volumn 1, Issue , 2006, Pages 271-278

Identification of weak motifs in multiple biological sequences using genetic algorithm

Author keywords

(l, d) motif; Clustering; DNA sequences; Genetic algorithm; Motif discovery; Protein binding site; Regulatory sites

Indexed keywords

ALGORITHMS; COMPUTER SIMULATION; CONFORMATIONS; GENETIC ALGORITHMS; MUTAGENESIS; PROTEINS;

EID: 33750275579     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/1143997.1144044     Document Type: Conference Paper
Times cited : (32)

References (26)
  • 1
    • 0002759539 scopus 로고
    • Unsupervised learning of multiple motifs in biopolymers using expectation maximization
    • T. L. Bailey and C. Elkan. Unsupervised learning of multiple motifs in biopolymers using expectation maximization. Machine Learning, 21:51-80, 1995.
    • (1995) Machine Learning , vol.21 , pp. 51-80
    • Bailey, T.L.1    Elkan, C.2
  • 2
    • 0036110853 scopus 로고    scopus 로고
    • Finding motifs using random projections
    • J. Buhler and M. Tompa. Finding motifs using random projections. J. Comput. Biol., 9(2):225-242, 2002.
    • (2002) J. Comput. Biol. , vol.9 , Issue.2 , pp. 225-242
    • Buhler, J.1    Tompa, M.2
  • 3
    • 32444449634 scopus 로고    scopus 로고
    • MDGA: Motif discovery using a genetic algorithm
    • D. Che, Y. Song, and K. Rasheed. MDGA: Motif discovery using a genetic algorithm. In Proceedings of GECCO2005, pages 447-452, 2005.
    • (2005) Proceedings of GECCO2005 , pp. 447-452
    • Che, D.1    Song, Y.2    Rasheed, K.3
  • 4
    • 84856991447 scopus 로고    scopus 로고
    • Voting algorithms for discovering long motifs
    • F. Y. L. Chin and H. C. M. Leung. Voting algorithms for discovering long motifs. In APBC, pages 261-271, 2005.
    • (2005) APBC , pp. 261-271
    • Chin, F.Y.L.1    Leung, H.C.M.2
  • 5
    • 3142737815 scopus 로고    scopus 로고
    • Discovery of sequence motifs related to coexpression of genes using evolutionary computation
    • G. B. Fogel, D. G. Weekes, G. Varga, E. R. Dow, H. B. Harlow, J. E. Onyia, and C. Su. Discovery of sequence motifs related to coexpression of genes using evolutionary computation. Nucleic Acids Research, 32(13):3826-3835, 2004.
    • (2004) Nucleic Acids Research , vol.32 , Issue.13 , pp. 3826-3835
    • Fogel, G.B.1    Weekes, D.G.2    Varga, G.3    Dow, E.R.4    Harlow, H.B.5    Onyia, J.E.6    Su, C.7
  • 6
    • 23744490071 scopus 로고    scopus 로고
    • Discovery, validation, and genetic dissection of transcription factor binding sites by comparative and functional genomics
    • J. Gertz, L. Riles, P. Turnbaugh, S.-W. Ho, and B. A. Cohen. Discovery, validation, and genetic dissection of transcription factor binding sites by comparative and functional genomics. Genome Research, 15:1145-1152, 2005.
    • (2005) Genome Research , vol.15 , pp. 1145-1152
    • Gertz, J.1    Riles, L.2    Turnbaugh, P.3    Ho, S.-W.4    Cohen, B.A.5
  • 9
    • 0032826179 scopus 로고    scopus 로고
    • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    • G. Z. Hertz and G. D. Stormo. Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics, 15:563-577, 1999.
    • (1999) Bioinformatics , vol.15 , pp. 563-577
    • Hertz, G.Z.1    Stormo, G.D.2
  • 11
    • 26444584579 scopus 로고    scopus 로고
    • Limitations and potentials of current motif discovery algorithms
    • J. Hu, B. Li, and D. Kihara. Limitations and potentials of current motif discovery algorithms. Nucleic Acids Research, 33(15):4899-4913, 2005.
    • (2005) Nucleic Acids Research , vol.33 , Issue.15 , pp. 4899-4913
    • Hu, J.1    Li, B.2    Kihara, D.3
  • 12
    • 0029159799 scopus 로고
    • Finding fexible patterns in unaligned protein sequences
    • I. Jonassen, J. F. Collins, and D. Higgins. Finding fexible patterns in unaligned protein sequences. Protein Science, 4(8): 1587-1595, 1995.
    • (1995) Protein Science , vol.4 , Issue.8 , pp. 1587-1595
    • Jonassen, I.1    Collins, J.F.2    Higgins, D.3
  • 13
    • 0041336054 scopus 로고    scopus 로고
    • Automatic discovery of protein motifs using genetic programming
    • X. Yao, editor, World Scientific
    • J. R. Koza and D. Andre. Automatic discovery of protein motifs using genetic programming. In X. Yao, editor, Evolutionary Computation, pages 171-197. World Scientific, 1999.
    • (1999) Evolutionary Computation , pp. 171-197
    • Koza, J.R.1    Andre, D.2
  • 14
    • 0027912333 scopus 로고
    • Detecting subtle sequence signals: A gibbs sampling strategy for multiple alignment
    • C. E. Lawrence, S. F. Altschul, M. S. Boguski, J. S. Liu, A. F. Neuwald, and J. C. Wootton. Detecting subtle sequence signals: a gibbs sampling strategy for multiple alignment. Science, 262:208-214, 1993.
    • (1993) Science , vol.262 , pp. 208-214
    • Lawrence, C.E.1    Altschul, S.F.2    Boguski, M.S.3    Liu, J.S.4    Neuwald, A.F.5    Wootton, J.C.6
  • 15
    • 0035228215 scopus 로고    scopus 로고
    • Bioprospector: Discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes
    • X. Liu, D. L. Burtlag, and J. S. Liu. Bioprospector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes. Pacific Symposium on Biocomputing, 6:127-138, 2001.
    • (2001) Pacific Symposium on Biocomputing , vol.6 , pp. 127-138
    • Liu, X.1    Burtlag, D.L.2    Liu, J.S.3
  • 16
    • 0036324753 scopus 로고    scopus 로고
    • An algorithm for finding protein-DNA binding sites with applications to chromatin immunoprecipitation microarray experiments
    • X. S. Liu, D. L. Brutlag, and J. S. Liu. An algorithm for finding protein-DNA binding sites with applications to chromatin immunoprecipitation microarray experiments. Nat. Biotechnol., 20:835-839, 2002.
    • (2002) Nat. Biotechnol. , vol.20 , pp. 835-839
    • Liu, X.S.1    Brutlag, D.L.2    Liu, J.S.3
  • 17
    • 0029144601 scopus 로고
    • Gibbs motif sampling: Detection of bacterial outer membrane protein repeats
    • A. F. Neuwald, J. S. Liu, and C. E. Lawrence. Gibbs motif sampling: detection of bacterial outer membrane protein repeats. Protein Science, 4:1618-1632, 1995.
    • (1995) Protein Science , vol.4 , pp. 1618-1632
    • Neuwald, A.F.1    Liu, J.S.2    Lawrence, C.E.3
  • 18
    • 0034565285 scopus 로고    scopus 로고
    • Combinatorial approaches to finding subtle signal in dna sequences
    • P. A. Pevzner and S.-H. Sze. Combinatorial approaches to finding subtle signal in dna sequences. In Intelligent System for Molecular Biology, pages 269-278, 2000.
    • (2000) Intelligent System for Molecular Biology , pp. 269-278
    • Pevzner, P.A.1    Sze, S.-H.2
  • 19
    • 0031684427 scopus 로고    scopus 로고
    • Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm
    • I. Rigoutsos and A. Floratos. Combinatorial pattern discovery in biological sequences: the TEIRESIAS algorithm. Bioinformatics, 14:55-67, 1998.
    • (1998) Bioinformatics , vol.14 , pp. 55-67
    • Rigoutsos, I.1    Floratos, A.2
  • 20
    • 0031787969 scopus 로고    scopus 로고
    • Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
    • F. P. Roth, J. D. Hughes, P. W. Estep, and G. M. Church. Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. Nature Biotechnology, 16:939-945, 1998.
    • (1998) Nature Biotechnology , vol.16 , pp. 939-945
    • Roth, F.P.1    Hughes, J.D.2    Estep, P.W.3    Church, G.M.4
  • 25
    • 0036108622 scopus 로고    scopus 로고
    • A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes
    • G. Thijs, K. Marchai, M. Lescot, S. Rombauts, B. De Moore, P. Rouze, and Y. Moreau. A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes. J. Comput. Biol., 9:447-464, 2002.
    • (2002) J. Comput. Biol. , vol.9 , pp. 447-464
    • Thijs, G.1    Marchai, K.2    Lescot, M.3    Rombauts, S.4    De Moore, B.5    Rouze, P.6    Moreau, Y.7
  • 26
    • 33644676526 scopus 로고    scopus 로고
    • Graphical approach to weak motif recognition
    • X. Yang and J. C. Rajapakse. Graphical approach to weak motif recognition. Genome Informatics, 15(2):52-62, 2004.
    • (2004) Genome Informatics , vol.15 , Issue.2 , pp. 52-62
    • Yang, X.1    Rajapakse, J.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.