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Volumn 55, Issue 4, 2006, Pages 685-691

Which random processes describe the tree of life? A large-scale study of phylogenetic tree imbalance

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIODIVERSITY; COMPARATIVE STUDY; PHYLOGENY; SPECIES DIFFERENTIATION; STATISTICAL ANALYSIS; STATISTICAL MODEL; STATISTICS;

EID: 33750245951     PISSN: 10635157     EISSN: 1076836X     Source Type: Journal    
DOI: 10.1080/10635150600889625     Document Type: Review
Times cited : (155)

References (36)
  • 2
    • 0036963179 scopus 로고    scopus 로고
    • Power of eight tree shape statistics to detect nonrandom diversification: A comparison by simulation of two models of cladogenesis
    • Agapow, P. M., and A. Purvis. 2002. Power of eight tree shape statistics to detect non-random diversification: A comparison by simulation of two models of cladogenesis. Syst. Biol. 51:866-872. (Pubitemid 36111101)
    • (2002) Systematic Biology , vol.51 , Issue.6 , pp. 866-872
    • Agapow, P.-M.1    Purvis, A.2
  • 3
    • 0001812090 scopus 로고
    • The continuum random tree II: An overview
    • (M. T. Barlow and N. H. Bingham, eds.). Cambridge University Press, Cambridge, UK
    • Aldous, D. J. 1991. The continuum random tree II: An overview. Pages 23-70 in Stochastic analysis (M. T. Barlow and N. H. Bingham, eds.). Cambridge University Press, Cambridge, UK.
    • (1991) Stochastic Analysis , pp. 23-70
    • Aldous, D.J.1
  • 4
    • 0000678416 scopus 로고    scopus 로고
    • Probability distributions on cladograms
    • (D. J. Aldous, and R. Pemantle, eds.). Springer, New York
    • Aldous, D. J. 1996. Probability distributions on cladograms. Pages 1-18 in Random discrete structures (D. J. Aldous, and R. Pemantle, eds.). Springer, New York.
    • (1996) Random Discrete Structures , pp. 1-18
    • Aldous, D.J.1
  • 5
    • 0002717710 scopus 로고    scopus 로고
    • Stochastic Models and Descriptive Statistics for Phylogenetic Trees, from Yule to Today
    • DOI 10.1214/ss/998929474
    • Aldous, D. J. 2001. Stochastic models and descriptive statistics for phylogenetic trees, from Yule to Today. Stat. Sci. 16:23-34. (Pubitemid 33632845)
    • (2001) Statistical Science , vol.16 , Issue.1 , pp. 23-34
    • Aldous, D.J.1
  • 6
    • 32144453296 scopus 로고    scopus 로고
    • apTreeshape: Statistical analysis of phylogenetic tree shape
    • DOI 10.1093/bioinformatics/bti798
    • Bortolussi, N., E. Durand, M. G. B. Blum, and O. François. 2006. ApTreeshape: Statistical analysis of phylogenetic treeshape. Bioinformatics 22:363-364. (Pubitemid 43205387)
    • (2006) Bioinformatics , vol.22 , Issue.3 , pp. 363-364
    • Bortolussi, N.1    Durand, E.2    Blum, M.3    Francois, O.4
  • 7
    • 0036959868 scopus 로고    scopus 로고
    • Whole-tree methods for detecting differential diversification rates
    • Chan, K. M. A., and B. R. Moore. 2002. Whole-tree tests of diversification rate variation. Syst. Biol. 51:855-865. (Pubitemid 36111100)
    • (2002) Systematic Biology , vol.51 , Issue.6 , pp. 855-865
    • Chan, K.M.A.1    Moore, B.R.2
  • 8
    • 0002552781 scopus 로고
    • Local regression models
    • Chapter 8 (J. M. Chambers and T. J. Hastie, eds.) Wadsworth Brooks/Cole. Pacific Grove: Wadsworth, CA
    • Cleveland, W. S., E. Grosse, and W. M. Shyu. 1992. Local regression models. Chapter 8 in Statistical models in S (J. M. Chambers and T. J. Hastie, eds.) Wadsworth Brooks/Cole. Pacific Grove: Wadsworth, CA.
    • (1992) Statistical Models in S
    • Cleveland, W.S.1    Grosse, E.2    Shyu, W.M.3
  • 9
    • 0002168111 scopus 로고
    • Review of phylogenetics: The theory and practice of phylogenetic systematics
    • Colless, D. H. 1982. Review of phylogenetics: The theory and practice of phylogenetic systematics. Syst. Zool. 31:100-104.
    • (1982) Syst. Zool. , vol.31 , pp. 100-104
    • Colless, D.H.1
  • 10
    • 0004128472 scopus 로고
    • Cambridge University Press, Cambridge, UK
    • Edwards, A. W. F. 1972. Likelihood. Cambridge University Press, Cambridge, UK.
    • (1972) Likelihood
    • Edwards, A.W.F.1
  • 11
    • 0003991673 scopus 로고    scopus 로고
    • Sinauer Associates, Sunderland, Massachusetts
    • Felsenstein, J. 2003. Inferring phylogenies. Sinauer Associates, Sunderland, Massachusetts.
    • (2003) Inferring Phylogenies
    • Felsenstein, J.1
  • 12
    • 0030304083 scopus 로고    scopus 로고
    • On the distribution of binary search trees under the random permutation model
    • DOI 10.1002/(SICI)1098-2418(199601)8:1<1::AID-RSA1>3.0.CO;2-1
    • Fill, J. A. 1996. On the distribution for binary search trees under the random permutation model. Random Struct. Algor. 8:1-25. (Pubitemid 126311510)
    • (1996) Random Structures and Algorithms , vol.8 , Issue.1 , pp. 1-25
    • Fill, J.A.1
  • 15
    • 0000373233 scopus 로고
    • Comparisons between observed phylogenetic topologies with null expectation among three monophyletic lineages
    • Guyer, C., and J. B. Slowinski. 1991. Comparisons between observed phylogenetic topologies with null expectation among three monophyletic lineages. Evolution 45:340-350.
    • (1991) Evolution , vol.45 , pp. 340-350
    • Guyer, C.1    Slowinski, J.B.2
  • 16
    • 0001230144 scopus 로고
    • Adaptive radiation and the topology of large phylogenies
    • Guyer, C., and J. B. Slowinski. 1993. Adaptive radiation and the topology of large phylogenies. Evolution 47:253-263.
    • (1993) Evolution , vol.47 , pp. 253-263
    • Guyer, C.1    Slowinski, J.B.2
  • 17
    • 0001996348 scopus 로고
    • The probabilities of rooted tree-shapes generated by random bifurcation
    • Harding, E. F. 1971. The probabilities of rooted tree-shapes generated by random bifurcation. Adv. Appl. Probab. 3:44-77.
    • (1971) Adv. Appl. Probab. , vol.3 , pp. 44-77
    • Harding, E.F.1
  • 19
    • 0001416546 scopus 로고
    • Patterns in tree balance among cladistic, phenetic, and randomly generated phylogenetic trees
    • Heard, S. B. 1992. Patterns in tree balance among cladistic, phenetic, and randomly generated phylogenetic trees. Evolution 46:1818-1826.
    • (1992) Evolution , vol.46 , pp. 1818-1826
    • Heard, S.B.1
  • 20
    • 0034701257 scopus 로고    scopus 로고
    • Phylogenetically patterned speciation rates and extinction risks change the loss of evolutionary history during extinctions
    • Heard, S. B., and A. Ø. Mooers. 2000. Phylogenetically patterned speciation rates and extinction risks change the loss of evolutionary history during extinctions: Phylogenetically patterned speciation rates and extinction risks alter the calculus of biodiversity. Proc. R. Soc. Lond. B 267:613-620. (Pubitemid 30175502)
    • (2000) Proceedings of the Royal Society B: Biological Sciences , vol.267 , Issue.1443 , pp. 613-620
    • Heard, S.B.1    Mooers, A.O.2
  • 21
    • 0030484686 scopus 로고    scopus 로고
    • Patterns in phylogenetic tree balance with variable and evolving speciation rates
    • Heard, S. B. 1996. Patterns in phylogenetic tree balance with variable and evolving speciation rates. Evolution 50:2141-2148. (Pubitemid 27114653)
    • (1996) Evolution , vol.50 , Issue.6 , pp. 2141-2148
    • Heard, S.B.1
  • 22
    • 0026540732 scopus 로고
    • Using phylogenetic trees to study speciation and extinction
    • Hey, J. 1992. Using phylogenetic trees to study speciation and extinction. Evolution 46:627-640.
    • (1992) Evolution , vol.46 , pp. 627-640
    • Hey, J.1
  • 23
    • 0001337578 scopus 로고
    • Searching for evolutionary patterns in the shape of a phylogenetic tree
    • Kirkpatrick, M., and M. Slatkin. 1993. Searching for evolutionary patterns in the shape of a phylogenetic tree. Evolution 47:1171-1181.
    • (1993) Evolution , vol.47 , pp. 1171-1181
    • Kirkpatrick, M.1    Slatkin, M.2
  • 24
    • 0038518202 scopus 로고    scopus 로고
    • Preserving the tree of life
    • DOI 10.1126/science.1085510
    • Mace, G. M., J. L. Gittleman, and A. Purvis. 2003. Preserving the Tree of Life. Science 300:1707-1709. (Pubitemid 36712559)
    • (2003) Science , vol.300 , Issue.5626 , pp. 1707-1709
    • Mace, G.M.1    Gittleman, J.L.2    Purvis, A.3
  • 25
    • 0035084255 scopus 로고    scopus 로고
    • Properties of phylogenetic trees generated by yule-type speciation models
    • DOI 10.1016/S0025-5564(00)00061-4, PII S0025556400000614
    • McKenzie, A., and M. Steel. 2000. Properties of phylogenetic trees generated by Yuletype speciation models. Math. Biosci. 170:91-112. (Pubitemid 32230649)
    • (2001) Mathematical Biosciences , vol.170 , Issue.1 , pp. 91-112
    • Steel, M.1    McKenzie, A.2
  • 26
    • 0028873765 scopus 로고
    • Tree balance and tree completeness
    • Mooers, A. Ø. 1995. Tree balance and tree completeness. Evolution 49:379-384.
    • (1995) Evolution , vol.49 , pp. 379-384
    • Mooers, A.Ø.1
  • 27
    • 0002638760 scopus 로고    scopus 로고
    • Inferring evolutionary process from phylogenetic tree shape
    • Mooers, A. Ø., and S. B. Heard. 1997. Inferring evolutionary process from phylogenetic tree shape. Q. Rev. Biol. 72:31-54. (Pubitemid 127681333)
    • (1997) Quarterly Review of Biology , vol.72 , Issue.1 , pp. 31-54
    • Mooers, A.O.1    Heard, S.B.2
  • 28
    • 84949558457 scopus 로고
    • Random processes in genetics
    • Moran, P. A. P. 1958. Random processes in genetics. Proc. Camb. Philos. Soc. 54:60-72.
    • (1958) Proc. Camb. Philos. Soc. , vol.54 , pp. 60-72
    • Moran, P.A.P.1
  • 29
    • 0002333151 scopus 로고    scopus 로고
    • Temporal changes in biodiversity: Detecting patterns and identifying causes
    • (K. Gaston, ed.). Oxford University Press, Oxford, UK
    • Nee, S., T. G. Barraclough, and P. H. Harvey. 1996. Temporal changes in biodiversity: Detecting patterns and identifying causes. Pages 230-252 in Biodiversity (K. Gaston, ed.). Oxford University Press, Oxford, UK.
    • (1996) Biodiversity , pp. 230-252
    • Nee, S.1    Barraclough, T.G.2    Harvey, P.H.3
  • 30
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of phylogenetics and evolution in R language
    • DOI 10.1093/bioinformatics/btg412
    • Paradis, E., J. Claude, and K. Strimmer. 2004. APE: Analyses of phylogenetics and evolution in R language. Bioinformatics 20:289-290. (Pubitemid 38195693)
    • (2004) Bioinformatics , vol.20 , Issue.2 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 32
    • 0034636486 scopus 로고    scopus 로고
    • Getting the measure of biodiversity
    • DOI 10.1038/35012221
    • Purvis, A., and A. Hector. 2000. Getting the measure of biodiversity. Nature 405:212-219. (Pubitemid 30313544)
    • (2000) Nature , vol.405 , Issue.6783 , pp. 212-219
    • Purvis, A.1    Hector, A.2
  • 33
    • 0000509127 scopus 로고
    • Stochastic models of phylogeny and the evolution of diversity
    • Raup, D. M., S. J. Gould, T. J. M. Schopf, and D. S. Simberloff. 1973. Stochastic models of phylogeny and the evolution of diversity. J. Geol. 81:525-542.
    • (1973) J. Geol. , vol.81 , pp. 525-542
    • Raup, D.M.1    Gould, S.J.2    Schopf, T.J.M.3    Simberloff, D.S.4
  • 34
    • 0001354740 scopus 로고
    • Tree-BASE: A prototype database of phylogenetic analyses and an interactive tool for browsing the phylogeny of life
    • Sanderson, M. J., M. J. Donoghue, W. Piel, and T. Eriksson. 1994. Tree-BASE: A prototype database of phylogenetic analyses and an interactive tool for browsing the phylogeny of life. Am. J. Bot. 81:183-189.
    • (1994) Am. J. Bot. , vol.81 , pp. 183-189
    • Sanderson, M.J.1    Donoghue, M.J.2    Piel, W.3    Eriksson, T.4
  • 35
    • 0042601470 scopus 로고    scopus 로고
    • Oxford University Press, Oxford, UK
    • Semple, C., and M. Steel. 2003. Phylogenetics. Oxford University Press, Oxford, UK.
    • (2003) Phylogenetics
    • Semple, C.1    Steel, M.2
  • 36
    • 0001778604 scopus 로고
    • A mathematical theory of evolution, based on the conclusions of Dr J. C. Willis
    • Yule, G. U. 1924. A mathematical theory of evolution, based on the conclusions of Dr J. C. Willis. Philos. Trans. Roy. Soc. London Ser. B 213:21-87.
    • (1924) Philos. Trans. Roy. Soc. London Ser. B , vol.213 , pp. 21-87
    • Yule, G.U.1


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