A new computer program (GlycoX) to determine simultaneously the glycosylation sites and oligosaccharide heterogeneity of glycoproteins

Journal of Proteome Research

Volumn 5, Issue 10, 2006, Pages 2800-2808

  An, Hyun Joo ^a   Tillinghast, John S ^a   Woodruff, David L ^a   Rocke, David M ^a   Lebrilla, Carlito B ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Glycosylation site; Isotope filter; Mass spectrometry; Oligosaccharide calculator; Oligosaccharide heterogeneity; Software

Indexed keywords

GLYCAN; GLYCOPROTEIN; ISOTOPE; OLIGOSACCHARIDE; PROTEINASE;

ARTICLE; CHEMICAL COMPOSITION; COMPUTER PROGRAM; GLYCOSYLATION; ION CYCLOTRON RESONANCE MASS SPECTROMETRY; ISOTOPE LABELING; MOLECULAR WEIGHT; PRIORITY JOURNAL; PROTEIN ANALYSIS;

AMINO ACID SEQUENCE; CARBOHYDRATE SEQUENCE; GLYCOPROTEINS; GLYCOSYLATION; ISOTOPES; MOLECULAR SEQUENCE DATA; OLIGOSACCHARIDES; SOFTWARE; SPECTROSCOPY, FOURIER TRANSFORM INFRARED;

EID: 33750116903     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr0602949     Document Type: Article

References (34)

1. Varki, A. Glycobiology 1993, 3, 97-130.
2. Helenius, A.; Aebi, M. Science 2001, 291, 2364-2369.
3. Lowe, J. B. Cell 2001, 104, 809-812.
4. Butler, M.; Quelhas, D.; Critchley, A. J.; Carchon, H.; Hebestreit, H. F.; Hibbert, R. G.; Vilarinho, L.; Teles, E.; Matthijs, G.; Schollen, E.; Argibay, P.; Harvey, D. J.; Dwek, R. A.; Jaeken, J.; Rudd, P. M. Glycobiology 2003, 13, 601-622.
5. Marquardt, T.; Freeze, H. Biol. Chem. 2001, 382, 161-177.
6. Brockhausen, I. Biochim. Biophys. Acta 1999, 1473, 67-95.
7. Apweiler, R.; Hermjakob, H.; Sharon, N. Biochim. Biophys. Acta 1999, 1473, 4-8.
8. Juhasz, P.; Martin, S. A. Int. J. Mass Spectrom. 1997, 169, 217-230.
9. An, H. J.; Peavy, T. R.; Hedrick, J. L.; Lebrilla, C. B. Anal. Chem. 2003, 75, 5628-5637.
10. Imre, T.; Schlosser, G.; Pocsfalvi, G.; Siciliano, R.; Molnar-Szollosi, E.; Kremmer, T.; Malorni, A.; Vekey, K. J. Mass Spectrom. 2005, 40, 1472-1483.
11. Mormann, M.; Paulsen, H.; Peter-Katalinic, J. Eur. J. Mass Spectrom. 2005, 11, 497-511.
12. Hagglund, P.; Bunkenborg, J.; Elortza, F.; Jensen, O. N.; Roepstorff, P. J. Proteome Res. 2004, 3, 556-566.
13. Medzihradszky, K. F.; Maltby, D. A.; Hall, S. C.; Settineri, C. A.; Burlingame, A. L. J. Am. Soc. Mass Spectrosc. 1994, 5, 350-358.
14. Krokhin, O.; Ens, W.; Standing, K. G.; Wilkins, J.; Perreault, H. Rapid Commun. Mass Spectrom. 2004, 18, 2020-2030.
15. Zhang, H.; Li, X. J.; Martin, D. B.; Aebersold, R. Nat Biotechnol. 2003, 21, 660-666.
16. Bunkenborg, J.; Pilch, B. J.; Podtelejnikov, A. V.; Wisniewski, J. R. Proteomics 2004, 4, 454-465.
17. Dezutterdambuyant, C.; Schmitt, D. A.; Dusserre, N.; Hanau, D.; Kolbe, H. V. J.; Kieny, M. P.; Gazzolo, L.; Mace, K.; Pasquali, J. L.; Olivier, R.; Schmitt, D. Res. Virol. 1991, 142, 129-138.
18. Bezouska, K.; Sklenar, J.; Novak, P.; Halada, P.; Havlicek, V.; Kraus, M.; Ticha, M.; Jonakova, V. Protein Sci. 1999, 8, 1551-1556.
19. Cooper, C. A.; Gasteiger, E.; Packer, N. H. Proteomics 2001, 1, 340-349.
20. Wilkins, M. R.; Gasteiger, E.; Gooley, A. A.; Herbert, B. R.; Molloy, M. P.; Binz, P. A.; Ou, K. L.; Sanchez, J. C.; Bairoch, A.; Williams, K. L.; Hochstrasser, D. F. J. Mol. Biol. 1999, 289, 645-657.
21. Lehmann, W. D.; Bohne, A.; von der Lieth, C. W. J. Mass Spectrom. 2000, 35, 1335-1341.
22. Wuhrer, M.; Koeleman, C. A. M.; Hokke, C. H.; Deelder, A. M. Anal. Chem. 2005, 77, 886-894.
23. Wuhrer, M.; Balog, C. I. A.; Koeleman, C. A. M.; Deelder, A. M.; Hokke, C. H. Biochim. Biophys. Acta 2005, 1723, 229-239.
24. Jiang, H.; Desaire, H.; Butnev, V. Y.; Bousfield, G. R. J. Am. Soc. Mass Spectrosc. 2004, 15, 750-758.
25. Jiang, H.; Irungu, J.; Desaire, H. J. Am. Soc. Mass Spectrosc. 2005, 16, 340-348.
26. Larsen, M. R.; Hojrup, P.; Roepstorff, P. Mol. Cell. Proteomics 2005, 4, 107-119.
27. Quadroni, M.; Ducret, A.; Stocklin, R. Proteomics 2004, 4, 2211-2215.
28. Wehofsky, M.; Hoffmann, R.; Hubert, M.; Spengler, B. Eur. J. Mass Spectrom. 2001, 7, 39-46.
29. Wehofsky, M.; Hoffmann, R. J. Mass Spectrom. 2002, 37, 223-229.
30. Johnson, K. L.; Muddiman, D. C. J. Am. Soc. Mass Spectrosc. 2004, 15, 437-445.
31. Wilm, M.; Mann, M. Anal. Chem. 1996, 68, 1-8.
32. Suzuki, T.; Kitajima, K.; Emori, Y.; Inoue, Y.; Inoue, S. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 6244-6249.
33. Fu, D. T.; Chen, L.; Oneill, R. A. Carbohydr. Res. 1994, 261, 173-186.
34. Song, Y. W., N. J.; Shimoda, Y.; Hedrick, J. L. unpublished results.