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Volumn 22, Issue 20, 2006, Pages 2463-2465

ARFA: A program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; RELEASE FACTOR 1; RELEASE FACTOR 2; RELEASE FACTOR H; UNCLASSIFIED DRUG;

EID: 33749831201     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl430     Document Type: Article
Times cited : (25)

References (20)
  • 1
    • 0035165680 scopus 로고    scopus 로고
    • Recode: A database of frameshifting, bypassing and codon redefinition utilized for gene expression
    • Baranov,P.V. et al. (2001) Recode: A database of frameshifting, bypassing and codon redefinition utilized for gene expression. Nucleic Acids Res., 29, 264-267.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 264-267
    • Baranov, P.V.1
  • 2
    • 0037139583 scopus 로고    scopus 로고
    • Recoding: Translational bifurcations in gene expression
    • Baranov,P.V. et al. (2002a) Recoding: Translational bifurcations in gene expression. Gene, 286, 187-201.
    • (2002) Gene , vol.286 , pp. 187-201
    • Baranov, P.V.1
  • 3
    • 0036246053 scopus 로고    scopus 로고
    • Release factor 2 frameshifting sites in different bacteria
    • Baranov,P.V. et al. (2002b) Release factor 2 frameshifting sites in different bacteria. EMBO Rep., 3, 373-377.
    • (2002) EMBO Rep. , vol.3 , pp. 373-377
    • Baranov, P.V.1
  • 5
    • 33749870699 scopus 로고    scopus 로고
    • Diverse bacterial genomes encode an operon of two genes, one of which is an unusual class-I release factor that potentially recognizes atypical mRNA signals other than normal stop codons
    • (in press)
    • Baranov,P.V. et al. (2006) Diverse bacterial genomes encode an operon of two genes, one of which is an unusual class-I release factor that potentially recognizes atypical mRNA signals other than normal stop codons. Biology Direct, (in press).
    • (2006) Biology Direct
    • Baranov, P.V.1
  • 7
    • 0022547355 scopus 로고
    • Expression of peptide chain release factor 2 requires high-efficiency frameshift
    • Craigen,W.J. and Caskey,C.T. (1986) Expression of peptide chain release factor 2 requires high-efficiency frameshift. Nature, 322, 273-275.
    • (1986) Nature , vol.322 , pp. 273-275
    • Craigen, W.J.1    Caskey, C.T.2
  • 8
    • 0022006831 scopus 로고
    • Bacterial peptide chain release factors: Conserved primary structure and possible frameshift regulation of release factor 2
    • Craigen,W.J. et al. (1985) Bacterial peptide chain release factors: conserved primary structure and possible frameshift regulation of release factor 2. Proc. Natl Acad. Sci. USA, 82, 3616-3620.
    • (1985) Proc. Natl Acad. Sci. USA , vol.82 , pp. 3616-3620
    • Craigen, W.J.1
  • 9
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • Eddy,S.R. (1998) Profile hidden Markov models. Bioinformatics, 14, 755-63.
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 10
    • 0037074005 scopus 로고    scopus 로고
    • Shifty ciliates: Frequent programmed translational frameshifting in euplotids
    • Klobutcher,L.A. and Farabaugh,P.J. (2002) Shifty ciliates: Frequent programmed translational frameshifting in euplotids. Cell, 111, 763-766.
    • (2002) Cell , vol.111 , pp. 763-766
    • Klobutcher, L.A.1    Farabaugh, P.J.2
  • 11
    • 0035234558 scopus 로고    scopus 로고
    • Rewiring the keyboard: Evolvability of the genetic code
    • Knight,R.D. et al. (2001) Rewiring the keyboard: Evolvability of the genetic code. Nat. Rev. Genet., 2, 49-58.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 49-58
    • Knight, R.D.1
  • 12
    • 0842267214 scopus 로고    scopus 로고
    • Reprogrammed genetic decoding in cellular gene expression
    • Namy,O. et al. (2004) Reprogrammed genetic decoding in cellular gene expression. Mol. Cell, 13, 157-168.
    • (2004) Mol. Cell , vol.13 , pp. 157-168
    • Namy, O.1
  • 13
    • 0025272240 scopus 로고
    • Rapid and sensitive sequence comparison with fastp and fasta
    • Pearson,W.R. (1990) Rapid and sensitive sequence comparison with fastp and fasta. Methods Enzymol., 183, 63-98.
    • (1990) Methods Enzymol. , vol.183 , pp. 63-98
    • Pearson, W.R.1
  • 14
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson,W.R. and Lipman,D.J. (1988) Improved tools for biological sequence comparison. Proc. Natl Acad. Sci. USA, 85, 2444-2448.
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 15
    • 0026674036 scopus 로고
    • Sequence comparison of new prokaryotic and mitochondrial members of the polypeptide chain release factor family predicts a five-domain model for release factor structure
    • Pel,H.J. et al. (1992) Sequence comparison of new prokaryotic and mitochondrial members of the polypeptide chain release factor family predicts a five-domain model for release factor structure. Nucleic Acids Res., 20, 4423-4428.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 4423-4428
    • Pel, H.J.1
  • 16
    • 13444306641 scopus 로고    scopus 로고
    • NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • Pruitt,K.D. et al. (2005) NCBI Reference Sequence (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res., 33, D501-D504.
    • (2005) Nucleic Acids Res. , vol.33
    • Pruitt, K.D.1
  • 17
    • 1642513699 scopus 로고    scopus 로고
    • Driving change: The evolution of alternative genetic codes
    • Santos,M.A. et al. (2004) Driving change: The evolution of alternative genetic codes. Trends Genet., 20, 95-102.
    • (2004) Trends Genet. , vol.20 , pp. 95-102
    • Santos, M.A.1
  • 18
    • 18644368714 scopus 로고    scopus 로고
    • The bioperl toolkit: Perl modules for the life sciences
    • Stajich,J.E. et al. (2002) The bioperl toolkit: Perl modules for the life sciences. Genome Res., 12, 1611-1618.
    • (2002) Genome Res. , vol.12 , pp. 1611-1618
    • Stajich, J.E.1
  • 19
    • 0029402489 scopus 로고
    • Translational termination efficiency in both bacteria and mammals is regulated by the base following the stop codon
    • Tate,W.P. et al. (1995) Translational termination efficiency in both bacteria and mammals is regulated by the base following the stop codon. Biochem. Cell Biol., 73, 1095-1103.
    • (1995) Biochem. Cell Biol. , vol.73 , pp. 1095-1103
    • Tate, W.P.1
  • 20
    • 0024004922 scopus 로고
    • Reading frame switch caused by base-pair formation between the 3′ end of 16S rRNA and the mRNA during elongation of protein synthesis in Escherichia coli
    • Weiss,R.B. et al. (1988) Reading frame switch caused by base-pair formation between the 3′ end of 16S rRNA and the mRNA during elongation of protein synthesis in Escherichia coli. EMBO J., 7, 1503-1507.
    • (1988) EMBO J. , vol.7 , pp. 1503-1507
    • Weiss, R.B.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.