-
1
-
-
0032229643
-
Circumscription of the Malvales and relationships to other Rosidae: Evidence from rbcL sequence data
-
Alverson, W. S., Karol, K. G., Baum, D. A., Chase, M. W., Swenson, S. M., McCourt, R. & Sytsma, K. J. 1998. Circumscription of the Malvales and relationships to other Rosidae: evidence from rbcL sequence data. Amer. J. Bot. 85: 876-887.
-
(1998)
Amer. J. Bot.
, vol.85
, pp. 876-887
-
-
Alverson, W.S.1
Karol, K.G.2
Baum, D.A.3
Chase, M.W.4
Swenson, S.M.5
McCourt, R.6
Sytsma, K.J.7
-
2
-
-
0000985161
-
A perspective on the contribution of plastid rbcL DNA sequences to angiosperm phylogenetics
-
Soltis, D. E., Soltis, P. S. & Doyle, J. J. (eds.), Kluwer Academic Publishers, Boston
-
Chase, M. W. & Albert, V. A. 1998. A perspective on the contribution of plastid rbcL DNA sequences to angiosperm phylogenetics. Pp. 488-507 in: Soltis, D. E., Soltis, P. S. & Doyle, J. J. (eds.), Molecular Systematics of Plants II: DNA Sequencing. Kluwer Academic Publishers, Boston.
-
(1998)
Molecular Systematics of Plants II: DNA Sequencing
, pp. 488-507
-
-
Chase, M.W.1
Albert, V.A.2
-
3
-
-
0032575125
-
Gene sequences, collaboration, and analysis of large data sets
-
Chase, M. W. & Cox, A. V. 1998. Gene sequences, collaboration, and analysis of large data sets. Austral. Syst. Bot. 11: 215-229.
-
(1998)
Austral. Syst. Bot.
, vol.11
, pp. 215-229
-
-
Chase, M.W.1
Cox, A.V.2
-
4
-
-
0000031660
-
Phylogenetics of seed plants: An analysis of nucleotide sequences from the plastid gene rbcL
-
Chase, M. W., Soltis, D. E., Olmstead, R. G., Morgan, D., Les, D. H., Mishler, B. D., Duvall, M. R., Price, R. A., Hills, H. G., Qiu, Y.-L., Kron, K. A., Rettig, J. H., Conti, E., Palmer, J. D., Manhart, J. R., Sytsma, K. J., Michael, H. J., Kress, J., Karol, K. G., Clark, W. D., Hedrén, M., Gaut, B. S., Jansen, R. K., Kim, K. J., Wimpee, C. F., Smith, J. F., Furnier, G. R., Strauss, S. H., Xiang, Q. Y., Plunkett, G. M., Soltis, P. S., Swensen, S. M., Williams, S. E., Gadek, P. A., Quinn, C. J., Eguiarte, L. E., Golenberg, E., Learn Jr, G. H., Graham, S. W., Barrett, S. C. H., Dayanandan, S. & Albert, V. A. 1993. Phylogenetics of seed plants: an analysis of nucleotide sequences from the plastid gene rbcL. Ann. Missouri Bot. Gard. 80: 528-580.
-
(1993)
Ann. Missouri Bot. Gard.
, vol.80
, pp. 528-580
-
-
Chase, M.W.1
Soltis, D.E.2
Olmstead, R.G.3
Morgan, D.4
Les, D.H.5
Mishler, B.D.6
Duvall, M.R.7
Price, R.A.8
Hills, H.G.9
Qiu, Y.-L.10
Kron, K.A.11
Rettig, J.H.12
Conti, E.13
Palmer, J.D.14
Manhart, J.R.15
Sytsma, K.J.16
Michael, H.J.17
Kress, J.18
Karol, K.G.19
Clark, W.D.20
Hedrén, M.21
Gaut, B.S.22
Jansen, R.K.23
Kim, K.J.24
Wimpee, C.F.25
Smith, J.F.26
Furnier, G.R.27
Strauss, S.H.28
Xiang, Q.Y.29
Plunkett, G.M.30
Soltis, P.S.31
Swensen, S.M.32
Williams, S.E.33
Gadek, P.A.34
Quinn, C.J.35
Eguiarte, L.E.36
Golenberg, E.37
Learn Jr., G.H.38
Graham, S.W.39
Barrett, S.C.H.40
Dayanandan, S.41
Albert, V.A.42
more..
-
5
-
-
0034636037
-
Seed plant phylogeny inferred from all three plant genomes: Monophyly of extant gymnosperms and origin of Gnetales from conifers
-
Chaw, S.-M., Parkinson, C. L., Cheng, Y., Vincent, T. M. & Palmer, J. D. 2000. Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers. Proc. Natl. Acad. Sci. U.S.A. 97: 4086-4091.
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 4086-4091
-
-
Chaw, S.-M.1
Parkinson, C.L.2
Cheng, Y.3
Vincent, T.M.4
Palmer, J.D.5
-
6
-
-
22844440801
-
The systematic component of phylogenetic error as a function of taxonomic sampling under parsimony
-
DeBry, R. W. 2005. The systematic component of phylogenetic error as a function of taxonomic sampling under parsimony. Syst. Biol. 54: 432-440.
-
(2005)
Syst. Biol.
, vol.54
, pp. 432-440
-
-
DeBry, R.W.1
-
7
-
-
0029993941
-
The guinea-pig is not a rodent
-
D'Erchia, A.-M., Gissi, C., Pesole, G., Saccone, C. & Arnason, U. 1996. The guinea-pig is not a rodent. Nature 381: 597-600.
-
(1996)
Nature
, vol.381
, pp. 597-600
-
-
D'Erchia, A.-M.1
Gissi, C.2
Pesole, G.3
Saccone, C.4
Arnason, U.5
-
8
-
-
8444222732
-
Prospects for building the tree of life from large sequence databases
-
Driskell, A. C., Ane, C., Burleigh, J. G., McMahon, M. M., O'Meara, B. C. & Sanderson, M. J. 2004. Prospects for building the tree of life from large sequence databases. Science 306: 1172-1174.
-
(2004)
Science
, vol.306
, pp. 1172-1174
-
-
Driskell, A.C.1
Ane, C.2
Burleigh, J.G.3
McMahon, M.M.4
O'Meara, B.C.5
Sanderson, M.J.6
-
9
-
-
0030417648
-
Parsimony jackknifing outperforms neighbor-joining
-
Farris, J. S., Albert, V. A., Källersjö, M., Lipscomb, D. & Kluge, A. G. 1996. Parsimony jackknifing outperforms neighbor-joining. Cladistics 12: 99-124.
-
(1996)
Cladistics
, vol.12
, pp. 99-124
-
-
Farris, J.S.1
Albert, V.A.2
Källersjö, M.3
Lipscomb, D.4
Kluge, A.G.5
-
10
-
-
84959792503
-
The number of evolutionary trees
-
Felsenstein, J. 1978. The number of evolutionary trees. Syst. Zool. 27: 27-33.
-
(1978)
Syst. Zool.
, vol.27
, pp. 27-33
-
-
Felsenstein, J.1
-
11
-
-
3042683994
-
The chloroplast genome of Nymphaea alba: Whole-genome analyses and the problem of identifying the most basal angiosperm
-
Goremykin, V., Hirsch-Ernst, K. I., Wölfl, S. & Hellwig, F. H. 2004. The chloroplast genome of Nymphaea alba: whole-genome analyses and the problem of identifying the most basal angiosperm. Molec. Biol. Evol. 21: 1445-1454.
-
(2004)
Molec. Biol. Evol.
, vol.21
, pp. 1445-1454
-
-
Goremykin, V.1
Hirsch-Ernst, K.I.2
Wölfl, S.3
Hellwig, F.H.4
-
12
-
-
0030032104
-
Phylogenetic position of the order Lagomorpha (rabbits, hares and allies)
-
Graur, D., Duret, L. & Gouy, M. 1996. Phylogenetic position of the order Lagomorpha (rabbits, hares and allies). Nature 379: 656-658.
-
(1996)
Nature
, vol.379
, pp. 656-658
-
-
Graur, D.1
Duret, L.2
Gouy, M.3
-
13
-
-
0032025857
-
Is it better to add taxa or characters to a difficult phylogenetic problem?
-
Graybeal, A. 1998. Is it better to add taxa or characters to a difficult phylogenetic problem? Syst. Biol. 47: 9-17.
-
(1998)
Syst. Biol.
, vol.47
, pp. 9-17
-
-
Graybeal, A.1
-
14
-
-
11944260381
-
Approaches for assessing phylogenetic accuracy
-
Hillis, D. M. 1995. Approaches for assessing phylogenetic accuracy. Syst. Biol. 44: 3-16.
-
(1995)
Syst. Biol.
, vol.44
, pp. 3-16
-
-
Hillis, D.M.1
-
15
-
-
0029834661
-
Inferring complex phylogenies
-
Hillis, D. M. 1996. Inferring complex phylogenies. Nature 383: 130-131.
-
(1996)
Nature
, vol.383
, pp. 130-131
-
-
Hillis, D.M.1
-
16
-
-
0034849408
-
MrBayes: Bayesian inference of phylogenetic trees
-
Huelsenbeck, J. P. & Ronquist, F. 2001, MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
17
-
-
0032420129
-
Simultaneous parsimony jackknife analysis of 2538 rbcL DNA sequences reveals support for major clades of green plants, land plants, seed plants and flowering plants
-
Källersjö, M., Farris, S. J., Chase, M. W., Bremer, B., Fay, M. F., Humphries, C. J., Petersen, G., Seberg, O. & Bremer, K. 1998. Simultaneous parsimony jackknife analysis of 2538 rbcL DNA sequences reveals support for major clades of green plants, land plants, seed plants and flowering plants. Pl. Syst. Evol. 213: 259-287.
-
(1998)
Pl. Syst. Evol.
, vol.213
, pp. 259-287
-
-
Källersjö, M.1
Farris, S.J.2
Chase, M.W.3
Bremer, B.4
Fay, M.F.5
Humphries, C.J.6
Petersen, G.7
Seberg, O.8
Bremer, K.9
-
18
-
-
0033854992
-
Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used
-
Kei, T. & Nei, M. 2000. Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used. Molec. Biol. Evol. 17: 1251-1258.
-
(2000)
Molec. Biol. Evol.
, vol.17
, pp. 1251-1258
-
-
Kei, T.1
Nei, M.2
-
19
-
-
0032514671
-
The optimization principle in phylogenetic analysis tends to give incorrect topologies when the number of nucleotides or amino acids used is small
-
Nei, M., Kumar, S. & Takahashi, K. 1998. The optimization principle in phylogenetic analysis tends to give incorrect topologies when the number of nucleotides or amino acids used is small. Proc. Natl. Acad. Sciences U.S.A. 95: 12390-12397.
-
(1998)
Proc. Natl. Acad. Sciences U.S.A.
, vol.95
, pp. 12390-12397
-
-
Nei, M.1
Kumar, S.2
Takahashi, K.3
-
20
-
-
0003257471
-
Search strategies for large datasets: An example using rbcL
-
Nixon, K. C., Davis, J. I. & Goloboff, P. A. 1998. Search strategies for large datasets: an example using rbcL. Amer. J. Bot. 85: 148.
-
(1998)
Amer. J. Bot.
, vol.85
, pp. 148
-
-
Nixon, K.C.1
Davis, J.I.2
Goloboff, P.A.3
-
21
-
-
0033613376
-
Inferring historical patterns of biological evolution
-
Pagel, M. 1999. Inferring historical patterns of biological evolution. Nature 401: 877-884.
-
(1999)
Nature
, vol.401
, pp. 877-884
-
-
Pagel, M.1
-
23
-
-
0033602474
-
Taxon sampling revisited
-
Poe, S. & Swofford, D. L. 1999. Taxon sampling revisited. Nature 398: 299-300.
-
(1999)
Nature
, vol.398
, pp. 299-300
-
-
Poe, S.1
Swofford, D.L.2
-
24
-
-
0002310070
-
Building phylogenies - Are the big easy?
-
Purvis, A. & Quicke, D. L. J. 1997. Building phylogenies - are the big easy? Trends Ecol. Evol. 12: 49-50.
-
(1997)
Trends Ecol. Evol.
, vol.12
, pp. 49-50
-
-
Purvis, A.1
Quicke, D.L.J.2
-
25
-
-
0033604548
-
The earliest angiosperms: Evidence from mitochondrial, plastid and nuclear genomes
-
Qiu, Y.-L., Lee, J., Bernasconi-Quadroni, F., Soltis, D. E., Soltis, P. S., Zanis, M., Chen, Z., Savolainen, V. & Chase, M. W. 1999. The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes. Nature 402: 404-407.
-
(1999)
Nature
, vol.402
, pp. 404-407
-
-
Qiu, Y.-L.1
Lee, J.2
Bernasconi-Quadroni, F.3
Soltis, D.E.4
Soltis, P.S.5
Zanis, M.6
Chen, Z.7
Savolainen, V.8
Chase, M.W.9
-
26
-
-
0031224822
-
Analyzing large data sets: rbcL 500 revisited
-
Rice, K. A., Donoghue, M. J. & Olmstead, R. G. 1997. Analyzing large data sets: rbcL 500 revisited. Syst. Biol. 46: 554-563.
-
(1997)
Syst. Biol.
, vol.46
, pp. 554-563
-
-
Rice, K.A.1
Donoghue, M.J.2
Olmstead, R.G.3
-
27
-
-
0019424782
-
Comparison of phylogenetic trees
-
Robinson, D. F. & Foulds, L. R. 1981. Comparison of phylogenetic trees. Math. Biol. 59: 131-144.
-
(1981)
Math. Biol.
, vol.59
, pp. 131-144
-
-
Robinson, D.F.1
Foulds, L.R.2
-
28
-
-
19044382857
-
Towards building the tree of life: A simulation study for all angiosperm genera
-
Salamin, N., Hodkinson, T. R. & Savolainen, V. 2005. Towards building the tree of life: a simulation study for all angiosperm genera. Syst. Biol. 54: 183-196.
-
(2005)
Syst. Biol.
, vol.54
, pp. 183-196
-
-
Salamin, N.1
Hodkinson, T.R.2
Savolainen, V.3
-
29
-
-
0034350426
-
Phylogenetics of flowering plants based upon a combined analysis of plastid atpB and rbcL gene sequences
-
Savolainen, V., Chase, M. W., Morton, C. M., Hoot, S. B., Soltis, D. E., Bayer, C., Fay, M. F., de Bruijn, A., Sullivan, S. & Qiu, Y.-L. 2000a. Phylogenetics of flowering plants based upon a combined analysis of plastid atpB and rbcL gene sequences. Syst. Biol. 49: 306-362.
-
(2000)
Syst. Biol.
, vol.49
, pp. 306-362
-
-
Savolainen, V.1
Chase, M.W.2
Morton, C.M.3
Hoot, S.B.4
Soltis, D.E.5
Bayer, C.6
Fay, M.F.7
De Bruijn, A.8
Sullivan, S.9
Qiu, Y.-L.10
-
30
-
-
0033864149
-
Phylogeny of the eudicots: A nearly complete familial analysis based on rbcL gene sequences
-
Savolainen, V., Fay, M. F., Albach, D. C., Backlund, A., van der Bank, M., Cameron, K. M., Johnson, S. A., Lledó, M. D., Pintaud, J.-C., Powell, M., Sheahan, M. C., Soltis, D. E., Soltis, P. S., Weston, P., Whitten, W. M., Wurdack, K. J. & Chase, M. W. 2000b. Phylogeny of the eudicots: a nearly complete familial analysis based on rbcL gene sequences. Kew Bull. 55: 257-309.
-
(2000)
Kew Bull.
, vol.55
, pp. 257-309
-
-
Savolainen, V.1
Fay, M.F.2
Albach, D.C.3
Backlund, A.4
Van Der Bank, M.5
Cameron, K.M.6
Johnson, S.A.7
Lledó, M.D.8
Pintaud, J.-C.9
Powell, M.10
Sheahan, M.C.11
Soltis, D.E.12
Soltis, P.S.13
Weston, P.14
Whitten, W.M.15
Wurdack, K.J.16
Chase, M.W.17
-
31
-
-
4644295677
-
The contest between parsimony and likelihood
-
Sober, E. 2004. The contest between parsimony and likelihood. Syst. Biol. 53: 644-653.
-
(2004)
Syst. Biol.
, vol.53
, pp. 644-653
-
-
Sober, E.1
-
33
-
-
4644350604
-
Angiosperm relationships, genome-scale data, and "ending congruence": A cautionary tale in phylogenetics
-
Soltis, D. E., Albert, V. A., Savolainen, V., Hilu, K., Qiu, Y.-L., Chase, M. W., Farris, J. S., Palmer, J. D. & Soltis, P. S. 2004. Angiosperm relationships, genome-scale data, and "ending congruence": a cautionary tale in phylogenetics. Trends Pl. Sci. 9: 477-483.
-
(2004)
Trends Pl. Sci.
, vol.9
, pp. 477-483
-
-
Soltis, D.E.1
Albert, V.A.2
Savolainen, V.3
Hilu, K.4
Qiu, Y.-L.5
Chase, M.W.6
Farris, J.S.7
Palmer, J.D.8
Soltis, P.S.9
-
34
-
-
0033838109
-
Angiosperm phylogeny inferred from a combined data set of 18S rDNA, rbcL, and atpB sequences
-
Soltis, D. E., Soltis, P. S., Chase, M. W., Mort, M. E., Albach, D. C., Zanis, M., Savolainen, V., Hahn, W. H., Hoot, S. B., Fay, M. F., Axtell, M., Swensen, S. M., Nixon, K. C. & Farris, J. S. 2000. Angiosperm phylogeny inferred from a combined data set of 18S rDNA, rbcL, and atpB sequences. Bot. J. Linn. Soc. 133: 381-461.
-
(2000)
Bot. J. Linn. Soc.
, vol.133
, pp. 381-461
-
-
Soltis, D.E.1
Soltis, P.S.2
Chase, M.W.3
Mort, M.E.4
Albach, D.C.5
Zanis, M.6
Savolainen, V.7
Hahn, W.H.8
Hoot, S.B.9
Fay, M.F.10
Axtell, M.11
Swensen, S.M.12
Nixon, K.C.13
Farris, J.S.14
-
35
-
-
0031462501
-
Angiosperm phylogeny inferred from 18S ribosomal DNA sequences
-
Soltis, D. E., Soltis, P. S., Nickrent, D. L., Johnson, L. A., Hahn, W. J., Hoot, S. B., Sweere, J. A., Kuzoff, R. K., Kron, K. A. & Chase, M. W. 1997. Angiosperm phylogeny inferred from 18S ribosomal DNA sequences. Ann. Missouri Bot. Gard. 84: 1-49.
-
(1997)
Ann. Missouri Bot. Gard.
, vol.84
, pp. 1-49
-
-
Soltis, D.E.1
Soltis, P.S.2
Nickrent, D.L.3
Johnson, L.A.4
Hahn, W.J.5
Hoot, S.B.6
Sweere, J.A.7
Kuzoff, R.K.8
Kron, K.A.9
Chase, M.W.10
-
36
-
-
0032025585
-
Inferring complex phylogenies using parsimony: An empirical approach using three large DNA data sets for angiosperms
-
Soltis, D. E., Soltis, P. S., Mort, M. E., Chase, M. W., Savolainen, V., Hoot, S. B. & Morton, C. M. 1998. Inferring complex phylogenies using parsimony: an empirical approach using three large DNA data sets for angiosperms. Syst. Biol. 47: 32-42.
-
(1998)
Syst. Biol.
, vol.47
, pp. 32-42
-
-
Soltis, D.E.1
Soltis, P.S.2
Mort, M.E.3
Chase, M.W.4
Savolainen, V.5
Hoot, S.B.6
Morton, C.M.7
-
37
-
-
0033604619
-
Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology
-
Soltis, P. S., Soltis, D. E. & Chase, M. W. 1999. Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology. Nature 402: 402-404.
-
(1999)
Nature
, vol.402
, pp. 402-404
-
-
Soltis, P.S.1
Soltis, D.E.2
Chase, M.W.3
-
39
-
-
0031686899
-
New phylogenetic venues opened by a novel implementation of the DNAm1 algorithm
-
Trelles, O., Ceron, C., Wang, H. C., Dopazo, J. & Carazo, J. M. 1998. New phylogenetic venues opened by a novel implementation of the DNAm1 algorithm. CABIOS 14: 544-545.
-
(1998)
CABIOS
, vol.14
, pp. 544-545
-
-
Trelles, O.1
Ceron, C.2
Wang, H.C.3
Dopazo, J.4
Carazo, J.M.5
-
41
-
-
0027241482
-
Monophyletic origins of the metazoa: An evolutionary link with fungi
-
Wainwright, P. O. 1993. Monophyletic origins of the metazoa: an evolutionary link with fungi. Science 260: 340-342.
-
(1993)
Science
, vol.260
, pp. 340-342
-
-
Wainwright, P.O.1
-
42
-
-
0029970097
-
Maximum-likelihood models for combined analyses of multiple sequence data
-
Yang, Z. 1996. Maximum-likelihood models for combined analyses of multiple sequence data. J. Molec. Evol. 42: 587-596.
-
(1996)
J. Molec. Evol.
, vol.42
, pp. 587-596
-
-
Yang, Z.1
-
43
-
-
22844452772
-
Branch-length prior influences Bayesian posterior probability of phylogeny
-
Yang, Z. & Rannala, B. 2005. Branch-length prior influences Bayesian posterior probability of phylogeny. Syst. Biol. 54: 455-470.
-
(2005)
Syst. Biol.
, vol.54
, pp. 455-470
-
-
Yang, Z.1
Rannala, B.2
|