-
1
-
-
0026559592
-
The consistency of several phylogeny-inference methods under varying evolutionary rates
-
DeBry, R. W. 1992. The consistency of several phylogeny-inference methods under varying evolutionary rates. Mol. Biol. Evol. 9:537-551.
-
(1992)
Mol. Biol. Evol.
, vol.9
, pp. 537-551
-
-
DeBry, R.W.1
-
2
-
-
0032558384
-
Phylogenetic information and experimental design in molecular systematics
-
Goldman, N. 1998. Phylogenetic information and experimental design in molecular systematics. Proc. R. Soc. Lond. B Biol. Sci. 265:1779-1786.
-
(1998)
Proc. R. Soc. Lond. B Biol. Sci.
, vol.265
, pp. 1779-1786
-
-
Goldman, N.1
-
3
-
-
0020308198
-
Unlikelihood that minimal phylogenies for a realistic biological study can be constructed in reasonable computational time
-
Graham, R. L., and L. R. Foulds. 1982. Unlikelihood that minimal phylogenies for a realistic biological study can be constructed in reasonable computational time. Math. Biosci. 60:133-142.
-
(1982)
Math. Biosci.
, vol.60
, pp. 133-142
-
-
Graham, R.L.1
Foulds, L.R.2
-
4
-
-
0032025857
-
Is it better to add taxa or characters to a difficult phylogenetic problem?
-
Graybeal, A. 1998. Is it better to add taxa or characters to a difficult phylogenetic problem? Syst. Biol. 47:9-17.
-
(1998)
Syst. Biol.
, vol.47
, pp. 9-17
-
-
Graybeal, A.1
-
5
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa, M., H. Kishino, and T. Yano. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174.
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
6
-
-
0029834661
-
Inferring complex phylogenies
-
Hillis, D. M. 1996. Inferring complex phylogenies. Nature 383:130-131.
-
(1996)
Nature
, vol.383
, pp. 130-131
-
-
Hillis, D.M.1
-
8
-
-
0032023889
-
Taxonomic sampling, phylogenetic accuracy, and investigator bias
-
Hillis, D. M. 1998. Taxonomic sampling, phylogenetic accuracy, and investigator bias. Syst. Biol. 47:3-8.
-
(1998)
Syst. Biol.
, vol.47
, pp. 3-8
-
-
Hillis, D.M.1
-
10
-
-
0242669921
-
Is sparse taxon sampling a problem for phylogenetic inference?
-
Hillis, D. M., D. D. Pollock, J. A. McGuire, and D. J. Zwickl. 2003. Is sparse taxon sampling a problem for phylogenetic inference? Syst. Biol. 52:124-126.
-
(2003)
Syst. Biol.
, vol.52
, pp. 124-126
-
-
Hillis, D.M.1
Pollock, D.D.2
McGuire, J.A.3
Zwickl, D.J.4
-
11
-
-
0038632308
-
Outgroup misplacement and phylogenetic inaccuracy under a molecular clock - A simulation study
-
Holland, B. R., D. Penny, and M. D. Hendy. 2003. Outgroup misplacement and phylogenetic inaccuracy under a molecular clock - a simulation study. Syst. Biol. 52:229-238.
-
(2003)
Syst. Biol.
, vol.52
, pp. 229-238
-
-
Holland, B.R.1
Penny, D.2
Hendy, M.D.3
-
12
-
-
0030315308
-
General inconsistency conditions for maximum parsimony: Effects of branch lengths and increasing numbers of taxa
-
Kim, J. 1996. General inconsistency conditions for maximum parsimony: Effects of branch lengths and increasing numbers of taxa. Syst. Biol. 45:363-374.
-
(1996)
Syst. Biol.
, vol.45
, pp. 363-374
-
-
Kim, J.1
-
13
-
-
0032028996
-
Large-scale phylogenies and measuring the performance of phylogenetic estimators
-
Kim, J. 1998. Large-scale phylogenies and measuring the performance of phylogenetic estimators. Syst. Biol. 47:43-60.
-
(1998)
Syst. Biol.
, vol.47
, pp. 43-60
-
-
Kim, J.1
-
14
-
-
0034548435
-
Efficiency of the neighbor-joining method in reconstructing deep and shallow evolutionary relationships in large phylogenies
-
Kumar, S., and S. R. Gadagkar. 2000. Efficiency of the neighbor-joining method in reconstructing deep and shallow evolutionary relationships in large phylogenies. J. Mol. Evol. 51:544-553.
-
(2000)
J. Mol. Evol.
, vol.51
, pp. 544-553
-
-
Kumar, S.1
Gadagkar, S.R.2
-
15
-
-
0035252080
-
Molecular phylogenetics and the origins of placental mammals
-
Murphy, W. J., E. Eizirik, W. E. Johnson, Y. P. Zhang, O. A. Ryder, and S. J. O'Brien. 2001. Molecular phylogenetics and the origins of placental mammals. Nature 409:614-618.
-
(2001)
Nature
, vol.409
, pp. 614-618
-
-
Murphy, W.J.1
Eizirik, E.2
Johnson, W.E.3
Zhang, Y.P.4
Ryder, O.A.5
O'Brien, S.J.6
-
17
-
-
0002393841
-
The use of tree comparison metrics
-
Penny, D., and M. D. Hendy. 1985. The use of tree comparison metrics. Syst. Zool. 34:75-82.
-
(1985)
Syst. Zool.
, vol.34
, pp. 75-82
-
-
Penny, D.1
Hendy, M.D.2
-
18
-
-
0033635920
-
Assessing an unknown evolutionary process: Effect of increasing site-specific knowledge through taxon addition
-
Pollock, D. D., and W. J. Bruno. 2000. Assessing an unknown evolutionary process: Effect of increasing site-specific knowledge through taxon addition. Mol. Biol. Evol. 17:1854-1858.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1854-1858
-
-
Pollock, D.D.1
Bruno, W.J.2
-
19
-
-
0036699885
-
Increased taxon sampling is advantageous for phylogenetic inference
-
Pollock, D. D., D. J. Zwickl, J. A. McGuire, and D. M. Hillis. 2002. Increased taxon sampling is advantageous for phylogenetic inference. Syst. Biol. 51:664-671.
-
(2002)
Syst. Biol.
, vol.51
, pp. 664-671
-
-
Pollock, D.D.1
Zwickl, D.J.2
McGuire, J.A.3
Hillis, D.M.4
-
22
-
-
0019424782
-
Comparison of phylogenetic trees
-
Robinson, D. F., and L. R. Foulds. 1981. Comparison of phylogenetic trees. Math. Biosci. 53:131-147.
-
(1981)
Math. Biosci.
, vol.53
, pp. 131-147
-
-
Robinson, D.F.1
Foulds, L.R.2
-
23
-
-
0035845536
-
Incomplete taxon sampling is not a problem for phylogenetic inference
-
Rosenberg, M. S., and S. Kumar. 2001. Incomplete taxon sampling is not a problem for phylogenetic inference. Proc. Natl. Acad. Sci. USA 98:10751-10756.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 10751-10756
-
-
Rosenberg, M.S.1
Kumar, S.2
-
24
-
-
0037291976
-
Taxon sampling, bioinformatics, and phylogenomics
-
Rosenberg, M. S., and S. Kumar. 2003. Taxon sampling, bioinformatics, and phylogenomics. Syst. Biol. 52:119-124.
-
(2003)
Syst. Biol.
, vol.52
, pp. 119-124
-
-
Rosenberg, M.S.1
Kumar, S.2
-
25
-
-
0031462501
-
Angiosperm phylogeny inferred from 18S ribosomal DNA sequences
-
Soltis, D. E., P. S. Soltis, D. L. Nickrent, L. A. Johnson, W. J. Hahn, S. B. Hoot, J. A. Sweere, R. K. Kuzoff, K. A. Kron, M. W. Chase, S. M. Swensen, E. A. Zimmer, S.-M. Chaw, L. J. Gillespie, W. J. Kress, and K. J, Sytsma. 1997. Angiosperm phylogeny inferred from 18S ribosomal DNA sequences. Ann. Mo. Bot. Gard. 84:1-49.
-
(1997)
Ann. Mo. Bot. Gard.
, vol.84
, pp. 1-49
-
-
Soltis, D.E.1
Soltis, P.S.2
Nickrent, D.L.3
Johnson, L.A.4
Hahn, W.J.5
Hoot, S.B.6
Sweere, J.A.7
Kuzoff, R.K.8
Kron, K.A.9
Chase, M.W.10
Swensen, S.M.11
Zimmer, E.A.12
Chaw, S.-M.13
Gillespie, L.J.14
Kress, W.J.15
Sytsma, K.J.16
-
26
-
-
0030310648
-
Accuracy of neighbor joining for n-taxon trees
-
Strimmer, K., and A. von Haeseler. 1996. Accuracy of neighbor joining for n-taxon trees. Syst. Biol. 45:516-523.
-
(1996)
Syst. Biol.
, vol.45
, pp. 516-523
-
-
Strimmer, K.1
Von Haeseler, A.2
-
28
-
-
0001336205
-
Phylogenetic Inference
-
(D. M. Hillis, C. Moritz, and B. K. Mable, eds.). Sinauer Associates, Sunderland, Massachusetts
-
Swofford, D. L., G. J. Olsen, P. J. Waddell, and D. M. Hillis. 1996. Phylogenetic Inference. Pages 407-514 in Molecular systematics (D. M. Hillis, C. Moritz, and B. K. Mable, eds.). Sinauer Associates, Sunderland, Massachusetts.
-
(1996)
Molecular Systematics
, pp. 407-514
-
-
Swofford, D.L.1
Olsen, G.J.2
Waddell, P.J.3
Hillis, D.M.4
-
29
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang, Z. 1997. PAML: A program package for phylogenetic analysis by maximum likelihood. CABIOS 13:555-556.
-
(1997)
CABIOS
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
30
-
-
0030749810
-
Bayesian phylogenetic inference using DNA sequences: A Markov Chain Monte Carlo Method
-
Yang, Z. and B. Rannala. 1997. Bayesian phylogenetic inference using DNA sequences: A Markov Chain Monte Carlo Method. Mol. Biol. Evol. 14:717-724.
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 717-724
-
-
Yang, Z.1
Rannala, B.2
-
31
-
-
0027132974
-
Maximum-likelihood-estimation of phylogeny from DNA-sequences when substitution rates differ over sites
-
Yang, Z. H. 1993. Maximum-likelihood-estimation of phylogeny from DNA-sequences when substitution rates differ over sites. Mol. Bio. and Evol. 10:1396-1401.
-
(1993)
Mol. Bio. and Evol.
, vol.10
, pp. 1396-1401
-
-
Yang, Z.H.1
-
33
-
-
0036699481
-
Increased taxon sampling greatly reduces phylogenetic error
-
Zwickl, D. J., and D. M. Hillis. 2002. Increased taxon sampling greatly reduces phylogenetic error. Syst. Biol. 51:588-598.
-
(2002)
Syst. Biol.
, vol.51
, pp. 588-598
-
-
Zwickl, D.J.1
Hillis, D.M.2
|