Site-specific experiments on folding/unfolding of Jun coiled coils: Thermodynamic and kinetic parameters from spin inversion transfer nuclear magnetic resonance at leucine-18

Biopolymers

Volumn 83, Issue 3, 2006, Pages 255-267

  D'Avignon, D André ^a   Bretthorst, G Larry ^a   Holtzer, Marilyn Emerson ^a   Schwarz, Kathleen A ^a   Angeletti, Ruth Hogue ^b   Mints, Lisa ^b   Holtzer, Alfred ^a  

^a WASHINGTON UNIVERSITY   (United States)

^b ALBERT EINSTEIN COLLEGE OF MEDICINE   (United States)

Author keywords

Coiled coils; Leucine zipper; Protein denaturation; Protein folding; Spin inversion transfer

Indexed keywords

COILED COILS; LEUCINE ZIPPER; PROTEIN DENATURATION; PROTEIN FOLDING; SPIN INVERSION TRANSFER;

DATA ACQUISITION; ENTHALPY; ENTROPY; NUCLEAR MAGNETIC RESONANCE; RATE CONSTANTS; SPECIFIC HEAT; THERMODYNAMICS;

BIOPOLYMERS;

LEUCINE; LEUCINE 18; TRANSCRIPTION FACTOR GCN4; UNCLASSIFIED DRUG;

ARTICLE; CARBON NUCLEAR MAGNETIC RESONANCE; CIRCULAR DICHROISM; ENTHALPY; ENTROPY; EQUILIBRIUM CONSTANT; KINETICS; NUCLEAR MAGNETIC RESONANCE; PROTEIN FOLDING; ROOM TEMPERATURE; THERMODYNAMICS;

CARBON ISOTOPES; CIRCULAR DICHROISM; HEAT; HOT TEMPERATURE; KINETICS; LEUCINE; LEUCINE ZIPPERS; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN FOLDING; THERMODYNAMICS;

EID: 33749326385     PISSN: 00063525     EISSN: 10970282     Source Type: Journal    
DOI: 10.1002/bip.20555     Document Type: Article

References (37)

1. Lupas, A. TIBS 1996, 21, 375-382.
2. Crick, F. H. Acta Crystallogr 1953, 6, 689-697.
3. McLachlan, A. D.; Stewart, M. J Mol Biol 1975, 98, 293-304.
4. O'Shea, E. K.; Rutkowski, R.; Kim, P. S. Science 1989, 243, 538-542.
5. O'Shea, E. K.; Klemm, J. D.; Kim, P. S.; Alber, T. Science 1991, 254, 539-544.
6. Harbury, P. B.; Zhang, T.; Kim, P. S.; Alber, T. Science 1993, 262, 1401-1407.
7. Lumb, K. J.; Carr, C. M.; Kim, P. S. Biochemistry 1994, 33, 7361-7367.
8. Lumb, K. J.; Kim, P. S. Biochemistry 1995, 34, 8642-8648.
9. Sosnick, T. R.; Jackson, S.; Wilk, W.; Englander, W.; DeGrado, W. F. Proteins Struct Funct Genet 1996, 24, 427-432.
10. Zitzewitz, J. A.; Bilsel, O.; Luo, J.; Jones, B. E.; Matthews, C. R. Biochemistry 1995, 34, 12812-12819.
11. Zitzewitz, J. A.; Ibarra-Molero, B.; Fishel, D. R.; Terry, K. L.; Matthews, C. R. J Mol Biol 2000, 296, 1105-1116.
12. Ibarra-Molero, B.; Makhatadze, G. I.; Matthews, C. R. Biochemistry 2001, 40, 719-731.
13. Holtzer, M. E.; Bretthorst, G. L.; d'Avignon, D. A.; Angeletti, R. H.; Mints, L.; Holtzer, A. Biophys J 2001, 80, 939-951.
14. O'Shea, E. K.; Rutkowski, R.; Stafford, W. F., III.; Kim, P. S. Science 1989, 245, 646-648.
15. O'Shea, E. K.; Rutkowski, R.; Kim, P. S. Cell 1992, 68, 699-708.
16. d'Avignon, D. A.; Bretthorst, G. L.; Holtzer, M. E.; Holtzer, A. Biophys J 1998, 74, 3190-3197.
17. d'Avignon, D. A.; Bretthorst, G. L.; Holtzer, M. E.; Holtzer, A. Biophys J 1999, 76, 2752-2759.
18. Lovett, E. G.; d'Avignon, D. A.; Holtzer, M. E.; Braswell, E. H.; Zhu, D.; Holtzer, A. Proc Natl Acad Sci USA 1996, 93, 1781-1785.
19. Holtzer, M. E.; Kumar, S.; Holtzer, A.; Crimmins, D. L. Biopolymers 1989, 28, 1597-1612.
20. Edelhoch, H. Biochemistry 1967, 6, 1948-1954.
21. Holtzer, M. E.; Crimmins, D. L.; Holtzer, A. Biopolymers 1995, 35, 125-136.
22. Bretthorst, G. L. In Lecture Notes in Statistics; Berger, J., Fienberg, S., Gani, J., Krickenberg, K., Singer, B., Eds.; Springer-Verlag: New York, 1988.
23. Bretthorst, G. L. J Magn Res 1990, 88, 533-551.
24. Bretthorst, G. L. J Magn Res 1990, 88, 552-570.
25. Bretthorst, G. L. J Magn Res 1990, 88, 571-595.
26. Jaynes, E. T. In Probability Theory-The Logic of Science; Bretthorst, G. L., Ed.; Cambridge University Press: Cambridge, 2003.
27. Metropolis, N.; Rosenbluth, A. W.; Rosenbluth, M. N.; Teller, A. H.; Teller, E. J Chem Phys 1953, 21, 1087-1091.
28. Gilks, W. R.; Richardson, S.; Spiegelhalter, D. J. Markov Chain Monte Carlo in Practice; Chapman & Hall: London, 1996.
29. Neal, R. M. Probabilistic Inference Using Markov Chain Monte Carlo Methods, Technical Report CRG-TR-93-1, Department of Computer Science, University of Toronto, 1993.
30. Holtzer, M. E.; Lovett, E. G.; d'Avignon, D. A.; Holtzer, A. Biophys J 1997, 73, 1031-1041.
31. Dragen, A. I.; Privalov, P. L. J Mol Biol 2002, 321, 891-908.
32. Holtzer, M. E.; Holtzer, A. Biopolymers 1992, 32, 1589-1591.
33. Holtzer, M. E.; Holtzer, A.; Skolnick, J. Macromolecules 1983, 16, 173-180.
34. Fletcher, N. H. The Chemical Physics of Ice; Cambridge University Press: Cambridge, 1970.
35. Liu, Z.; Chan, H. S. J Mol Biol 2005, 349, 872-889.
36. Myers, J. K.; Oas, T. G. J Mol Biol 1999, 289, 205-209.
37. Cooper, A. Biophys Chem 2005, 115, 89-97.