Resistance gene analogues of wheat: Molecular genetic analysis of ESTs

Theoretical and Applied Genetics

Volumn 113, Issue 6, 2006, Pages 987-1002

  McFadden, H G ^a   Lehmensiek, A ^b   Lagudah, E S ^a  

^a CSIRO   (Australia)

^b UNIVERSITY OF SOUTHERN QUEENSLAND   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

DISEASE RESISTANCE; EXPRESSED SEQUENCE TAGS (EST); NUCLEOTIDE BINDING SITE (NBS); RESISTANCE GENE ANALOGUE (RGA);

BIOMARKERS; CHROMOSOMES; CLONING; DISEASE CONTROL; DNA;

PLANTS (BOTANY);

ARTICLE; BARLEY; CHROMOSOME MAP; DNA SEQUENCE; EXPRESSED SEQUENCE TAG; GENETIC LINKAGE; GENETIC MARKER; GENETICS; INNATE IMMUNITY; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; WHEAT;

CHROMOSOME MAPPING; EXPRESSED SEQUENCE TAGS; GENETIC LINKAGE; GENETIC MARKERS; HORDEUM; IMMUNITY, INNATE; IMMUNITY, NATURAL; LINKAGE (GENETICS); POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SEQUENCE ANALYSIS, DNA; TRITICUM;

HORDEUM VULGARE SUBSP. VULGARE; TRITICUM AESTIVUM;

EID: 33749139720     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-006-0358-3     Document Type: Article

References (38)

1. Arumuganathan K, Earle ED (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9:211-215
2. Bai J, Pennill LA, Ning J, Lee SW, Ramalingam J, Webb CA, Zhao B, Sun Q, Nelson JC, Leach JE, Hulbert SH (2002) Diversity in nucleotide binding site-leucine-rich repeat genes in cereals. Genome Res 12:1871-1884
3. Calenge F, Van der Linden CG, Van de Weg E, Schouten HJ, Van Arkel G, Denance C, Durel CE (2005) Resistance gene analogues identified through the NBS-profiling method map close to major genes and QTL for disease resistance in apple. Theor Appl Genet 110:660-668
4. Cannon S, Young N (2003) Genomic architecture and evolution of NBS-LRRs. In: Stacey G, Keen N (eds) Plant-microbe interactions. The American Phytopathological Society, St Paul, pp 81-95
5. Chalmers KJ, Campbell AW, Kretschmer J, Karakousis A, Henschke PH, Pierens S, Harker N, Pallotta M, Cornish GB, Shariflou MR, Rampling LR, McLauchlan A, Daggard G, Sharp PJ, Holton TA, Sutherland MW, Appels R, Langridge P (2001) Construction of three linkage maps in bread wheat, Triticum aestivum. Aust J Agr Res 52:1089-1119
6. Cheng JP, Yan J, Krugman T, Fahima T (2005) Application of fluorescence-based resistance gene analog analysis for genotyping plant genetic resources. Biotechnol Lett 27:83-89
7. Collins N, Park R, Spielmeyer W, Ellis J, Pryor AJ (2001) Resistance gene analogs in barley and their relationship to rust resistance genes. Genome 44:375-381
8. Dilbirligi M, Gill KS (2003) Identification and analysis of expressed resistance gene sequences in wheat. Plant Mol Biol 53:771-787
9. Dilbirligi M, Erayman M, Sandhu D, Sidhu D, Gill KS (2004) Identification of wheat chromosomal regions containing expressed resistance genes. Genetics 166:461-481
10. Feuillet C, Travella S, Stein N, Albar L, Nublat A, Keller B (2003) Map-based isolation of the leaf rust disease resistance gene Lr10 from the hexaploid wheat (Triticum aestivum L.) genome. Proc Natl Acad Sci USA 100:15253-15258
11. He LM, Du CG, Covaleda L, Xu ZY, Robinson AF, Yu JZ, Kohel RJ, Zhang HB (2004) Cloning, characterization, and evolution of the NBS-LRR-encoding resistance gene analogue family in polyploid cotton (Gossypium hirsutum L.). Mol Plant Microbe Interact 17:1234-1241
12. Huang L, Brooks SA, Li WL, Fellers JP, Trick HN, Gill BS (2003) Map-based cloning of leaf rust resistance gene Lr21 from the large and polyploid genome of bread wheat. Genetics 164:655-664
13. Huettel B, Santra D, Muehlbauer FJ, Kahl G (2002) Resistance gene analogues of chickpea (Cicer arietinum L): isolation, genetic mapping and association with a Fusarium resistance gene cluster. Theor Appl Genet 105:479-490
14. Lagudah ES, Appels R, Brown AHD, McNeil D (1991) The molecular-genetic analysis of Triticum tauschii, the D-genome donor to hexaploid wheat. Genome 34:375-386
15. Lanaud C, Risterucci AM, Pieretti I, N'Goran JAK, Fargeas D (2004) Characterisation and genetic mapping of resistance and defence gene analogs in cocoa (Theobroma cacao L.). Mol Breed 13:211-227
16. Lazo GR, Chao S, Hummel DD, Edwards H, Crossman CC, Lui N, Matthews DE, Carollo VL, Hane DL, You FM, Butler GE, Miller RE, Close TJ, Peng JH, Lapitan NLV, Gustafson JP, Qi LL, Echalier B, Gill BS, Dilbirligi M, Randhawa HS, Gill KS, Greene RA, Sorrells ME, Akhunov ED, Dvorak J, Linkiewicz AM, Dubcovsky J, Hossain KG, Kalavacharla V, Kianian SF, Mahmoud AA, Miftahudin, Ma XT, Conley EJ, Anderson JA, Pathan MS, Nguyen HT, McGuire PE, Qualset CO, Anderson DO (2004) Development of an expressed sequence tag (EST) resource for wheat (Triticum aestivum L.): EST generation, unigene analysis, probe selection and bioinformatics for a 16,000-locus bin-delineated map. Genetics 168:585-593
17. Lehmensiek A, Eckermann P, Verbyla A, Appels R, Sutherland M, Daggard G (2005) Curation of wheat maps to improve map accuracy and QTL detection. Aust J Agric Res 56:1347-1354
18. Leister D, Kurth J, Laurie DA, Yano M, Sasaki T, Devos K, Graner A, Schulze-Lefert P (1998) Rapid reorganization of resistance gene homologues in cereal genomes. Proc Natl Acad Sci USA 95:370-375
19. Madsen LH, Collins NC, Rakwalska M, Backes G, Sandal N, Krusell L, Jensen J, Waterman EH, Jahoor A, Ayliffe M, Pryor AJ, Langridge P, Schulze-Lefert P, Stougaard J (2003) Barley disease resistance gene analogs of the NBS-LRR class: identification and mapping. Mol Genet Genomics 269:150-161
20. Maleki L, Faris JD, Bowden RL, Gill BS, Fellers JP (2003) Physical and genetic mapping of wheat kinase analogs and NBS-LRR resistance gene analogs. Crop Sci 43:660-670
21. Mammadov JA, Steffenson BJ, Maroof MA (2005) High-resolution mapping of the barley leaf rust resistance gene Rph5 using barley expressed sequence tags (ESTs) and synteny with rice. Theor Appl Genet 111:1651-1660
22. Manly KF, Cudmore RH, Meer JM (2001) Map manager QTX, cross-platform software for genetic mapping. Mamm Genome 12:930-932
23. McIntosh R, Devos K, Dubcovsky J, Rogers W, Morris C, Appels R, Anderson O (2005) Catlogue of gene symbols for wheat: 2005 Supplement. http://www.shigennigacjp/wheat/komugi/genes/macgene/supplement2005pdf
24. McIntyre CL, Casu RE, Drenth J, Knight D, Whan VA, Croft BJ, Jordan DR, Manners JM (2005) Resistance gene analogues in sugarcane and sorghum and their association with quantitative trait loci for rust resistance. Genome 48:391-400
25. Meyers BC, Kozik A, Griego A, Kuang HH, Michelmore RW (2003) Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell 15:809-834
26. Monosi B, Wisser RJ, Pennill L, Hulbert SH (2004) Full-genome analysis of resistance gene homologues in rice. Theor Appl Genet 109:1434-1447
27. Qi LL, Echalier B, Chao S, Lazo GR, Butler GE, Anderson OD, Akhunov ED, Dvorak J, Linkiewicz AM, Ratnasiri A, Dubcovsky J, Bermudez-Kandianis CE, Greene RA, Kantety R, La Rota CM, Munkvold JD, Sorrells SF, Sorrells ME, Dilbirligi M, Sidhu D, Erayman M, Randhawa HS, Sandhu D, Bondareva SN, Gill KS, Mahmoud AA, Ma XF, Miftahudin, Gustafson JP, Conley EJ, Nduati V, Gonzalez-Hernandez JL, Anderson JA, Peng JH, Lapitan NLV, Hossain KG, Kalavacharla V, Kianian SF, Pathan MS, Zhang DS, Nguyen HT, Choi DW, Fenton RD, Close TJ, McGuire PE, Qualset CO, Gill BS (2004) A chromosome bin map of 16,000 expressed sequence tag loci and distribution of genes among the three genomes of polyploid wheat. Genetics 168:701-712
28. Seah S, Sivasithamparam K, Karakousis A, Lagudah ES (1998) Cloning and characterisation of a family of disease resistance gene analogs from wheat and barley. Theo Appl Genet 97:937-945
29. Sears E (1966) Nullisomic-tetrasomic combinations in hexaploid wheat. In: R R, Lewis K (eds) Chromosome manipulations and plant genetics. Oliver and Boyd, Edinburgh, pp 29-45
30. Soriano JM, Vilanova S, Romero C, Llacer G, Badenes M (2005) Characterization and mapping of NBS-LRR resistance gene analogs in apricot (Prunus armeniaca L.). Theor Appl Genet 110:980-989
31. Spielmeyer W, Lagudah S (2003) Homoeologous set of NBS-LRR genes located at leaf and stripe rust resistance loci on short arms of chromosome 1 of wheat. Funct Integr Genomics 3:86-90
32. Spielmeyer W, Robertson M, Collins N, Leister D, Schulze-Lefert P, Seah S, Moullet O, Lagudah ES (1998) A superfamily of disease resistance gene analogs is located on all homoeologous chromosome groups of wheat (Triticum aestivum). Genome 41:782-788
33. Spielmeyer W, Huang L, Bariana H, Laroche A, Gill BS, Lagudah ES (2000) NBS-LRR sequence family is associated with leaf and stripe rust resistance on the end of homoeologous chromosome group 1S of wheat. Theor Appl Genet 101:1139-1144
34. Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93:77-78
35. Wisser RJ, Sun Q, Hulbert SH, Kresovich S, Nelson RJ (2005) Identification and characterization of regions of the rice genome associated with broad-spectrum, quantitative disease resistance. Genetics 169:2277-2293
36. Yahiaoui N, Srichumpa P, Dudler R, Keller B (2004) Genome analysis at different ploidy levels allows cloning of the powdery mildew resistance gene Pm3b from hexaploid wheat. Plant J 37:528-538
37. Zhang D, Choi DW, Wanamaker S, Fenton RD, Chin A, Malatrasi M, Turuspekov Y, Walia H, Akhunov ED, Kianian P, Otto C, Simons K, Deal KR, Echenique V, Stamova B, Ross K, Butler GE, Strader L, Verhey SD, Johnson R, Altenbach S, Kothari K, Tanaka C, Shah MM, Laudencia-Chingeuanco D, Han P, Miller RE, Crossman CC, Chao S, Lazo GR, Klueva N, Gustafson JP, Kianian SF, Dubcovsky J, Walker-Simmons MK, Gill KS, Dvorak J, Anderson OD, Sorrells ME, McGuire PE, Qualset CO, Nguyen HT, Close TJ (2004) Construction and evaluation of cDNA libraries for large-scale expressed sequence tag sequencing in wheat (Triticum aestivum L.). Genetics 168:595-608
38. Zhou T, Wang Y, Chen JQ, Araki H, Jing Z, Jiang K, Shen J, Tian D (2004) Genome-wide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes. Mol Genet Genomics 271:402-415