-
1
-
-
0026612521
-
pp125FAK a structurally distinctive protein-tyrosine kinase associated with focal adhesions
-
Schaller MD, Borgman CA, Cobb BS, Vines RR, Reynolds AB, Parsons JT: pp125FAK a structurally distinctive protein-tyrosine kinase associated with focal adhesions. Proc Natl Acad Sci USA 1992, 89:5192-5196.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 5192-5196
-
-
Schaller, M.D.1
Borgman, C.A.2
Cobb, B.S.3
Vines, R.R.4
Reynolds, A.B.5
Parsons, J.T.6
-
2
-
-
0026674919
-
Focal adhesion protein-tyrosine kinase phosphorylated in response to cell attachment to fibronectin
-
Hanks SK, Calalb MB, Harper MC, Patel SK: Focal adhesion protein-tyrosine kinase phosphorylated in response to cell attachment to fibronectin. Proc Natl Acad Sci USA 1992, 89:8487-8491.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 8487-8491
-
-
Hanks, S.K.1
Calalb, M.B.2
Harper, M.C.3
Patel, S.K.4
-
4
-
-
0029154733
-
Protein tyrosine kinase PYK2 involved in Ca(2+)-induced regulation of ion channel and MAP kinase functions
-
Lev S, Moreno H, Martinez R, Canoll P, Peles E, Musacchio JM, Plowman GD, Rudy B, Schlessinger J: Protein tyrosine kinase PYK2 involved in Ca(2+)-induced regulation of ion channel and MAP kinase functions. Nature 1995, 376:737-745.
-
(1995)
Nature
, vol.376
, pp. 737-745
-
-
Lev, S.1
Moreno, H.2
Martinez, R.3
Canoll, P.4
Peles, E.5
Musacchio, J.M.6
Plowman, G.D.7
Rudy, B.8
Schlessinger, J.9
-
5
-
-
0029096541
-
Cloning and characterization of cell adhesion kinase beta, a novel protein-tyrosine kinase of the focal adhesion kinase sub-family
-
Sasaki H, Nagura K, Ishino M, Tobioka H, Kotani K, Sasaki T: Cloning and characterization of cell adhesion kinase beta, a novel protein-tyrosine kinase of the focal adhesion kinase sub-family. J Biol Chem 1995, 270:21206-21219.
-
(1995)
J Biol Chem
, vol.270
, pp. 21206-21219
-
-
Sasaki, H.1
Nagura, K.2
Ishino, M.3
Tobioka, H.4
Kotani, K.5
Sasaki, T.6
-
6
-
-
0028826350
-
Identification and characterization of a novel related adhesion focal tyrosine kinase (RAFTK) from megakaryocytes and brain
-
Avraham S, London R, Fu Y, Ota S, Hiregowdara D, Li J, Jiang S, Pasztor LM, White RA, Groopman JE, et al.: Identification and characterization of a novel related adhesion focal tyrosine kinase (RAFTK) from megakaryocytes and brain. J Biol Chem 1995, 270:27742-27751.
-
(1995)
J Biol Chem
, vol.270
, pp. 27742-27751
-
-
Avraham, S.1
London, R.2
Fu, Y.3
Ota, S.4
Hiregowdara, D.5
Li, J.6
Jiang, S.7
Pasztor, L.M.8
White, R.A.9
Groopman, J.E.10
-
7
-
-
0010233279
-
Activation of a novel calcium-dependent protein-tyrosine kinase. Correlation with c-Jun N-terminal kinase but not mitogen-activated protein kinase activation
-
Yu H, Li X, Marchetto GS, Dy R, Hunter D, Calvo B, Dawson TL, Wilm M, Anderegg RJ, Graves LM, et al.: Activation of a novel calcium-dependent protein-tyrosine kinase. Correlation with c-Jun N-terminal kinase but not mitogen-activated protein kinase activation. J Biol Chem 1996, 271:29993-29998.
-
(1996)
J Biol Chem
, vol.271
, pp. 29993-29998
-
-
Yu, H.1
Li, X.2
Marchetto, G.S.3
Dy, R.4
Hunter, D.5
Calvo, B.6
Dawson, T.L.7
Wilm, M.8
Anderegg, R.J.9
Graves, L.M.10
-
8
-
-
0031683065
-
The FERM domain: A unique module involved in the linkage of cytoplasmic proteins to the membrane
-
Chishti AH, Kim AC, Marfatia SM, Lutchman M, Hanspal M, Jindal H, Liu SC, Low PS, Rouleau GA, Mohandas N, et al.: The FERM domain: a unique module involved in the linkage of cytoplasmic proteins to the membrane. Trends Biochem Sci 1998, 23:281-282.
-
(1998)
Trends Biochem Sci
, vol.23
, pp. 281-282
-
-
Chishti, A.H.1
Kim, A.C.2
Marfatia, S.M.3
Lutchman, M.4
Hanspal, M.5
Jindal, H.6
Liu, S.C.7
Low, P.S.8
Rouleau, G.A.9
Mohandas, N.10
-
9
-
-
0033071270
-
The N-termini of FAK and JAKs contain divergent band 4.1 domains
-
Girault JA, Labesse G, Mornon JP, Callebaut I: The N-termini of FAK and JAKs contain divergent band 4.1 domains. Trends Biochem Sci 1999, 24:54-57.
-
(1999)
Trends Biochem Sci
, vol.24
, pp. 54-57
-
-
Girault, J.A.1
Labesse, G.2
Mornon, J.P.3
Callebaut, I.4
-
10
-
-
0027428367
-
Identification of sequences required for the efficient localization of the focal adhesion kinase, pp 125FAK, to cellular focal adhesions
-
Hildebrand JD, Schaller MD, Parsons JT: Identification of sequences required for the efficient localization of the focal adhesion kinase, pp 125FAK, to cellular focal adhesions. J Cell Biol 1993, 123:993-1005.
-
(1993)
J Cell Biol
, vol.123
, pp. 993-1005
-
-
Hildebrand, J.D.1
Schaller, M.D.2
Parsons, J.T.3
-
11
-
-
0036118284
-
The structural basis of localization and signaling by the focal adhesion targeting domain
-
Arold ST, Hoellerer MK, Noble ME: The structural basis of localization and signaling by the focal adhesion targeting domain. Structure 2002, 10:319-327.
-
(2002)
Structure
, vol.10
, pp. 319-327
-
-
Arold, S.T.1
Hoellerer, M.K.2
Noble, M.E.3
-
12
-
-
1842848073
-
Structures of the cancer-related Aurora-A, FAK, and EphA2 protein kinases from nanovolume crystallography
-
Nowakowski J, Cronin CN, McRee DE, Knuth MW, Nelson CG, Pavletich NP, Rogers J, Sang BC, Scheibe DN, Swanson RV, et al.: Structures of the cancer-related Aurora-A, FAK, and EphA2 protein kinases from nanovolume crystallography. Structure 2002, 10:1659-1667.
-
(2002)
Structure
, vol.10
, pp. 1659-1667
-
-
Nowakowski, J.1
Cronin, C.N.2
McRee, D.E.3
Knuth, M.W.4
Nelson, C.G.5
Pavletich, N.P.6
Rogers, J.7
Sang, B.C.8
Scheibe, D.N.9
Swanson, R.V.10
-
13
-
-
33644863663
-
Crystal structure of the FERM domain of focal adhesion kinase
-
Ceccarelli DF, Song HK, Poy F, Schaller MD, Eck MJ: Crystal structure of the FERM domain of focal adhesion kinase. J Biol Chem 2006, 281:252-259.
-
(2006)
J Biol Chem
, vol.281
, pp. 252-259
-
-
Ceccarelli, D.F.1
Song, H.K.2
Poy, F.3
Schaller, M.D.4
Eck, M.J.5
-
14
-
-
0031962265
-
SH2- and SH3-mediated interactions between focal adhesion kinase and Src
-
Thomas JW, Ellis B, Boerner RJ, Knight WB, White GC 2nd, Schaller MD: SH2- and SH3-mediated interactions between focal adhesion kinase and Src. J Biol Chem 1998, 273:577-583.
-
(1998)
J Biol Chem
, vol.273
, pp. 577-583
-
-
Thomas, J.W.1
Ellis, B.2
Boerner, R.J.3
Knight, W.B.4
White II, G.C.5
Schaller, M.D.6
-
15
-
-
0041924982
-
A novel role for FAK as a protease-targeting adaptor protein: Regulation by p42 ERK and Src
-
Carragher NO, Westhoff MA, Fincham VJ, Schaller MD, Frame MC: A novel role for FAK as a protease-targeting adaptor protein: regulation by p42 ERK and Src. Curr Biol 2003, 13:1442-1450.
-
(2003)
Curr Biol
, vol.13
, pp. 1442-1450
-
-
Carragher, N.O.1
Westhoff, M.A.2
Fincham, V.J.3
Schaller, M.D.4
Frame, M.C.5
-
16
-
-
0037969627
-
Signaling between focal adhesion kinase and trio
-
Medley QG, Buchbinder EG, Tachibana K, Ngo H, Serra-Pages C, Streuli M: Signaling between focal adhesion kinase and trio. J Biol Chem 2003, 278:13265-13270.
-
(2003)
J Biol Chem
, vol.278
, pp. 13265-13270
-
-
Medley, Q.G.1
Buchbinder, E.G.2
Tachibana, K.3
Ngo, H.4
Serra-Pages, C.5
Streuli, M.6
-
17
-
-
0028350859
-
Autophosphorylation of the focal adhesion kinase, pp125FAK, directs SH2- dependent binding of pp60src
-
Schaller MD, Hildebrand JD, Shannon JD, Fox JW, Vines RR, Parsons JT: Autophosphorylation of the focal adhesion kinase, pp125FAK, directs SH2- dependent binding of pp60src. Mol Cell Biol 1994, 14:1680-1688.
-
(1994)
Mol Cell Biol
, vol.14
, pp. 1680-1688
-
-
Schaller, M.D.1
Hildebrand, J.D.2
Shannon, J.D.3
Fox, J.W.4
Vines, R.R.5
Parsons, J.T.6
-
18
-
-
0028918391
-
Identification of Tyr-397 as the primary site of tyrosine phosphorylation and pp60src association in the focal adhesion kinase, pp 125FAK
-
Eide BL, Turck CW, Escobedo JA: Identification of Tyr-397 as the primary site of tyrosine phosphorylation and pp60src association in the focal adhesion kinase, pp 125FAK. Mol Cell Biol 1995, 15:2819-2827.
-
(1995)
Mol Cell Biol
, vol.15
, pp. 2819-2827
-
-
Eide, B.L.1
Turck, C.W.2
Escobedo, J.A.3
-
19
-
-
0028877919
-
Tyrosine phosphorylation of focal adhesion kinase at sites in the catalytic domain regulates kinase activity: A role for Src family kinases
-
Calalb MB, Polte TR, Hanks SK: Tyrosine phosphorylation of focal adhesion kinase at sites in the catalytic domain regulates kinase activity: a role for Src family kinases. Mol Cell Biol 1995, 15:954-963.
-
(1995)
Mol Cell Biol
, vol.15
, pp. 954-963
-
-
Calalb, M.B.1
Polte, T.R.2
Hanks, S.K.3
-
20
-
-
0029120440
-
Reduced cell motility and enhanced focal adhesion contact formation in cells from FAK-deficient mice
-
Ilic D, Furuta Y, Kanazawa S, Takada N, Sobue K, Nakatsuji N, Nomura S, Fujimoto J, Okada M, Yamamoto T: Reduced cell motility and enhanced focal adhesion contact formation in cells from FAK-deficient mice. Nature 1995, 377:539-544.
-
(1995)
Nature
, vol.377
, pp. 539-544
-
-
Ilic, D.1
Furuta, Y.2
Kanazawa, S.3
Takada, N.4
Sobue, K.5
Nakatsuji, N.6
Nomura, S.7
Fujimoto, J.8
Okada, M.9
Yamamoto, T.10
-
21
-
-
3142521875
-
Control of motile and invasive cell phenotypes by focal adhesion kinase
-
Schlaepfer DD, Mitra SK, Ilic D: Control of motile and invasive cell phenotypes by focal adhesion kinase. Biochim Biophys Acta 2004, 1692:77-102.
-
(2004)
Biochim Biophys Acta
, vol.1692
, pp. 77-102
-
-
Schlaepfer, D.D.1
Mitra, S.K.2
Ilic, D.3
-
22
-
-
0345550397
-
FAK deficiency in cells contributing to the basal lamina results in cortical abnormalities resembling congenital muscular dystrophies
-
Beggs HE, Schahin-Reed D, Zang K, Goebbels S, Nave KA, Gorski J, Jones KR, Sretavan D, Reichardt LF: FAK deficiency in cells contributing to the basal lamina results in cortical abnormalities resembling congenital muscular dystrophies. Neuron 2003, 40:501-514.
-
(2003)
Neuron
, vol.40
, pp. 501-514
-
-
Beggs, H.E.1
Schahin-Reed, D.2
Zang, K.3
Goebbels, S.4
Nave, K.A.5
Gorski, J.6
Jones, K.R.7
Sretavan, D.8
Reichardt, L.F.9
-
23
-
-
11244328441
-
Control of axonal branching and synapse formation by focal adhesion kinase
-
Rico B, Beggs HE, Schahin-Reed D, Kimes N, Schmidt A, Reichardt LF: Control of axonal branching and synapse formation by focal adhesion kinase. Nat Neurosci 2004, 7:1059-1069.
-
(2004)
Nat Neurosci
, vol.7
, pp. 1059-1069
-
-
Rico, B.1
Beggs, H.E.2
Schahin-Reed, D.3
Kimes, N.4
Schmidt, A.5
Reichardt, L.F.6
-
24
-
-
21744435478
-
The role of focal-adhesion kinase in cancer - A new therapeutic opportunity
-
McLean GW, Carragher NO, Avizienyte E, Evans J, Brunton VG, Frame MC: The role of focal-adhesion kinase in cancer - a new therapeutic opportunity. Nat Rev Cancer 2005, 5:505-515.
-
(2005)
Nat Rev Cancer
, vol.5
, pp. 505-515
-
-
McLean, G.W.1
Carragher, N.O.2
Avizienyte, E.3
Evans, J.4
Brunton, V.G.5
Frame, M.C.6
-
25
-
-
0032586727
-
FAK and PYK2/CAKbeta in the nervous system: A link between neuronal activity, plasticity and survival?
-
Girault JA, Costa A, Derkinderen P, Studler JM, Toutant M: FAK and PYK2/ CAKbeta in the nervous system: a link between neuronal activity, plasticity and survival? Trends Neurosci 1999, 22:257-263.
-
(1999)
Trends Neurosci
, vol.22
, pp. 257-263
-
-
Girault, J.A.1
Costa, A.2
Derkinderen, P.3
Studler, J.M.4
Toutant, M.5
-
26
-
-
0034002462
-
RAFTK/Pyk2-mediated cellular signalling
-
Avraham H, Park SY, Schinkmann K, Avraham S: RAFTK/Pyk2-mediated cellular signalling. Cell Signal 2000, 12:123-133.
-
(2000)
Cell Signal
, vol.12
, pp. 123-133
-
-
Avraham, H.1
Park, S.Y.2
Schinkmann, K.3
Avraham, S.4
-
27
-
-
0842281489
-
Multiple connections link FAK to cell motility and invasion
-
Schlaepfer DD, Mitra SK: Multiple connections link FAK to cell motility and invasion. Curr Opin Genet Dev 2004, 14:92-101.
-
(2004)
Curr Opin Genet Dev
, vol.14
, pp. 92-101
-
-
Schlaepfer, D.D.1
Mitra, S.K.2
-
28
-
-
0032832967
-
Cloning and characterization of Dfak56, a homolog of focal adhesion kinase, in Drosophila melanogaster
-
Fujimoto J, Sawamoto K, Okabe M, Takagi Y, Tezuka T, Yoshikawa S, Ryo H, Okano H, Yamamoto T: Cloning and characterization of Dfak56, a homolog of focal adhesion kinase, in Drosophila melanogaster. J Biol Chem 1999, 274:29196-29201.
-
(1999)
J Biol Chem
, vol.274
, pp. 29196-29201
-
-
Fujimoto, J.1
Sawamoto, K.2
Okabe, M.3
Takagi, Y.4
Tezuka, T.5
Yoshikawa, S.6
Ryo, H.7
Okano, H.8
Yamamoto, T.9
-
29
-
-
0033544934
-
DFak56 is a novel Drosophila melanogaster focal adhesion kinase
-
Palmer RH, Fessler LI, Edeen PT, Madigan SJ, McKeown M, Hunter T: DFak56 is a novel Drosophila melanogaster focal adhesion kinase. J Biol Chem 1999, 274:35621-35629.
-
(1999)
J Biol Chem
, vol.274
, pp. 35621-35629
-
-
Palmer, R.H.1
Fessler, L.I.2
Edeen, P.T.3
Madigan, S.J.4
McKeown, M.5
Hunter, T.6
-
30
-
-
0033593001
-
Expression of DFak56, a Drosophila homolog of vertebrate focal adhesion kinase, supports a role in cell migration in vivo
-
Fox GL, Rebay I, Hynes RO: Expression of DFak56, a Drosophila homolog of vertebrate focal adhesion kinase, supports a role in cell migration in vivo. Proc Natl Acad Sci USA 1999, 96:14978-14983.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 14978-14983
-
-
Fox, G.L.1
Rebay, I.2
Hynes, R.O.3
-
31
-
-
0036230877
-
DWnt4 regulates cell movement and focal adhesion kinase during Drosophila ovarian morphogenesis
-
Cohen ED, Mariol MC, Wallace RM, Weyers J, Kamberov YG, Pradel J, Wilder EL DWnt4 regulates cell movement and focal adhesion kinase during Drosophila ovarian morphogenesis. Dev Cell 2002, 2:437-448.
-
(2002)
Dev Cell
, vol.2
, pp. 437-448
-
-
Cohen, E.D.1
Mariol, M.C.2
Wallace, R.M.3
Weyers, J.4
Kamberov, Y.G.5
Pradel, J.6
Wilder, E.L.7
-
32
-
-
12344250987
-
Focal adhesion kinase is not required for integrin function or viability in Drosophila
-
Grabbe C, Zervas CG, Hunter T, Brown NH, Palmer RH: Focal adhesion kinase is not required for integrin function or viability in Drosophila. Development 2004, 131:5795-5805.
-
(2004)
Development
, vol.131
, pp. 5795-5805
-
-
Grabbe, C.1
Zervas, C.G.2
Hunter, T.3
Brown, N.H.4
Palmer, R.H.5
-
33
-
-
0842322789
-
Focal adhesion kinase (FAK) expression and phosphorylation in sea urchin embryos
-
Garcia MG, Toney SJ, Hille MB: Focal adhesion kinase (FAK) expression and phosphorylation in sea urchin embryos. Gene Expr Patterns 2004, 4:223-234.
-
(2004)
Gene Expr Patterns
, vol.4
, pp. 223-234
-
-
Garcia, M.G.1
Toney, S.J.2
Hille, M.B.3
-
34
-
-
0035894523
-
Roles for zebrafish focal adhesion kinase in notochord and somite morphogenesis
-
Henry CA, Crawford BD, Yan YL, Postlethwait J, Cooper MS, Hille MB: Roles for zebrafish focal adhesion kinase in notochord and somite morphogenesis. Dev Biol 2001, 240:474-487.
-
(2001)
Dev Biol
, vol.240
, pp. 474-487
-
-
Henry, C.A.1
Crawford, B.D.2
Yan, Y.L.3
Postlethwait, J.4
Cooper, M.S.5
Hille, M.B.6
-
35
-
-
0041468624
-
Activity and distribution of paxillin, focal adhesion kinase, and cadherin indicate cooperative roles during zebrafish morphogenesis
-
Crawford BD, Henry CA, Clason TA, Becker AL, Hille MB: Activity and distribution of paxillin, focal adhesion kinase, and cadherin indicate cooperative roles during zebrafish morphogenesis. Mol Biol Cell 2003, 14:3065-3081.
-
(2003)
Mol Biol Cell
, vol.14
, pp. 3065-3081
-
-
Crawford, B.D.1
Henry, C.A.2
Clason, T.A.3
Becker, A.L.4
Hille, M.B.5
-
36
-
-
0027439594
-
Autonomous expression of a noncatalytic domain of the focal adhesion- associated protein tyrosine kinase pp125FAK
-
Schaller MD, Borgman CA, Parsons JT: Autonomous expression of a noncatalytic domain of the focal adhesion- associated protein tyrosine kinase pp125FAK. Mol Cell Biol 1993, 13:785-791.
-
(1993)
Mol Cell Biol
, vol.13
, pp. 785-791
-
-
Schaller, M.D.1
Borgman, C.A.2
Parsons, J.T.3
-
37
-
-
0032784060
-
Regulated expression of focal adhesion kinase-related nonkinase, the autonomously expressed C-terminal domain of focal adhesion kinase
-
Nolan K, Lacoste J, Parsons JT: Regulated expression of focal adhesion kinase-related nonkinase, the autonomously expressed C-terminal domain of focal adhesion kinase. Mol Cell Biol 1999, 19:6120-6129.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 6120-6129
-
-
Nolan, K.1
Lacoste, J.2
Parsons, J.T.3
-
38
-
-
0031846188
-
Expression and characterization of splice variants of PYK2, a focal adhesion kinase-related protein
-
Xiong WC, Macklem M, Parsons JT: Expression and characterization of splice variants of PYK2, a focal adhesion kinase-related protein. J Cell Sci 1998, 111(Pt 14):1981-1991.
-
(1998)
J Cell Sci
, vol.111
, Issue.PART 14
, pp. 1981-1991
-
-
Xiong, W.C.1
Macklem, M.2
Parsons, J.T.3
-
39
-
-
0030009393
-
Cloning of focal adhesion kinase, pp125FAK, from rat brain reveals multiple transcripts with different patterns of expression
-
Burgaya F, Girault JA: Cloning of focal adhesion kinase, pp125FAK, from rat brain reveals multiple transcripts with different patterns of expression. Brain Res Mol Brain Res 1996, 37:63-73.
-
(1996)
Brain Res Mol Brain Res
, vol.37
, pp. 63-73
-
-
Burgaya, F.1
Girault, J.A.2
-
40
-
-
0030725406
-
Alternatively spliced focal adhesion kinase in rat brain with increased autophosphorylation activity
-
Burgaya F, Toutant M, Studler JM, Costa A, Le Bert M, Gelman M, Girault JA: Alternatively spliced focal adhesion kinase in rat brain with increased autophosphorylation activity. J Biol Chem 1997, 272:28720-28725.
-
(1997)
J Biol Chem
, vol.272
, pp. 28720-28725
-
-
Burgaya, F.1
Toutant, M.2
Studler, J.M.3
Costa, A.4
Le Bert, M.5
Gelman, M.6
Girault, J.A.7
-
41
-
-
0034658330
-
Autophosphorylation of Tyr397 and its phosphorylation by Src-family kinases are altered in focal adhesion-kinase neuronal isoforms
-
Toutant M, Studler JM, Burgaya F, Costa A, Ezan P, Gelman M, Girault JA: Autophosphorylation of Tyr397 and its phosphorylation by Src-family kinases are altered in focal adhesion-kinase neuronal isoforms. Biochem J 2000, 348(Pt 1): 119-128.
-
(2000)
Biochem J
, vol.348
, Issue.PART 1
, pp. 119-128
-
-
Toutant, M.1
Studler, J.M.2
Burgaya, F.3
Costa, A.4
Ezan, P.5
Gelman, M.6
Girault, J.A.7
-
42
-
-
0036839636
-
Alternative splicing controls the mechanisms of FAK autophosphorylation
-
Toutant M, Costa A, Studler JM, Kadare G, Carnaud M, Girault JA: Alternative splicing controls the mechanisms of FAK autophosphorylation. Mol Cell Biol 2002, 22:7731-7743.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 7731-7743
-
-
Toutant, M.1
Costa, A.2
Studler, J.M.3
Kadare, G.4
Carnaud, M.5
Girault, J.A.6
-
43
-
-
0027260615
-
Expression of an N-terminally truncated form of human focal adhesion kinase in brain
-
Andre E, Becker-Andre M: Expression of an N-terminally truncated form of human focal adhesion kinase in brain. Biochem Biophys Res Commun 1993, 190:140-147.
-
(1993)
Biochem Biophys Res Commun
, vol.190
, pp. 140-147
-
-
Andre, E.1
Becker-Andre, M.2
-
44
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J: Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 2000, 17:540-552.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
45
-
-
4444340536
-
Subfunction partitioning, the teleost radiation and the annotation of the human genome
-
Postlethwait J, Amores A, Cresko W, Singer A, Yan YL: Subfunction partitioning, the teleost radiation and the annotation of the human genome. Trends Genet 2004, 20:481-490.
-
(2004)
Trends Genet
, vol.20
, pp. 481-490
-
-
Postlethwait, J.1
Amores, A.2
Cresko, W.3
Singer, A.4
Yan, Y.L.5
-
46
-
-
0030690133
-
Deciphering protein sequence information through hydrophobic cluster analysis (HCA): Current status and perspectives
-
Callebaut I, Labesse G, Durand P, Poupon A, Canard L, Chomilier J, Henrissat B, Mornon JP: Deciphering protein sequence information through hydrophobic cluster analysis (HCA): current status and perspectives. Cell Mol Life Sci 1997, 53:621-645.
-
(1997)
Cell Mol Life Sci
, vol.53
, pp. 621-645
-
-
Callebaut, I.1
Labesse, G.2
Durand, P.3
Poupon, A.4
Canard, L.5
Chomilier, J.6
Henrissat, B.7
Mornon, J.P.8
-
47
-
-
2442583529
-
Cloning and characterization of the promoter region of human focal adhesion kinase gene: Nuclear factor kappa B and p53 binding sites
-
Golubovskaya V, Kaur A, Cance W: Cloning and characterization of the promoter region of human focal adhesion kinase gene: nuclear factor kappa B and p53 binding sites. Biochim Biophys Acta 2004, 1678:111-125.
-
(2004)
Biochim Biophys Acta
, vol.1678
, pp. 111-125
-
-
Golubovskaya, V.1
Kaur, A.2
Cance, W.3
-
48
-
-
26444518835
-
FRNK, the autonomously expressed C-terminal region of focal adhesion kinase, is uniquely regulated in vascular smooth muscle: Analysis of expression in transgenic mice
-
Hayasaka H, Simon K, Hershey ED, Masumoto KH, Parsons JT: FRNK, the autonomously expressed C-terminal region of focal adhesion kinase, is uniquely regulated in vascular smooth muscle: analysis of expression in transgenic mice. J Cell Biochem 2005, 95:1248-1263.
-
(2005)
J Cell Biochem
, vol.95
, pp. 1248-1263
-
-
Hayasaka, H.1
Simon, K.2
Hershey, E.D.3
Masumoto, K.H.4
Parsons, J.T.5
-
50
-
-
0029153296
-
Molecular analysis and developmental expression of the focal adhesion kinase pp125FAK in Xenopus laevis
-
Hens MD, DeSimone DW: Molecular analysis and developmental expression of the focal adhesion kinase pp125FAK in Xenopus laevis. Dev Biol 1995, 170:274-288.
-
(1995)
Dev Biol
, vol.170
, pp. 274-288
-
-
Hens, M.D.1
DeSimone, D.W.2
-
51
-
-
0029120211
-
Cloning of a Xenopus laevis cDNA encoding focal adhesion kinase (FAK) and expression during early development
-
Zhang X, Wright CV, Hanks SK: Cloning of a Xenopus laevis cDNA encoding focal adhesion kinase (FAK) and expression during early development. Gene 1995, 160:219-222.
-
(1995)
Gene
, vol.160
, pp. 219-222
-
-
Zhang, X.1
Wright, C.V.2
Hanks, S.K.3
-
52
-
-
12344250822
-
Function of alternative splicing
-
Stamm S, Ben-Ari S, Rafalska I, Tang Y, Zhang Z, Toiber D, Thanaraj TA, Soreq H: Function of alternative splicing. Gene 2005, 344:1-20.
-
(2005)
Gene
, vol.344
, pp. 1-20
-
-
Stamm, S.1
Ben-Ari, S.2
Rafalska, I.3
Tang, Y.4
Zhang, Z.5
Toiber, D.6
Thanaraj, T.A.7
Soreq, H.8
-
53
-
-
0026342613
-
An analysis of vertebrate mRNA sequences: Intimations of translational control
-
Kozak M: An analysis of vertebrate mRNA sequences: intimations of translational control. J Cell Biol 1991, 115:887-903.
-
(1991)
J Cell Biol
, vol.115
, pp. 887-903
-
-
Kozak, M.1
-
54
-
-
0346157327
-
The origins and implications of Aluternative splicing
-
Kreahling J, Graveley BR: The origins and implications of Aluternative splicing. Trends Genet 2004, 20:1-4.
-
(2004)
Trends Genet
, vol.20
, pp. 1-4
-
-
Kreahling, J.1
Graveley, B.R.2
-
55
-
-
22344434300
-
Conditional knockout of focal adhesion kinase in endothelial cells reveals its role in angiogenesis and vascular developmentin late embryogenesis
-
Shen TL, Park AY, Alcaraz A, Peng X, Jang I, Koni P, Flavell RA, Gu H, Guan JL: Conditional knockout of focal adhesion kinase in endothelial cells reveals its role in angiogenesis and vascular developmentin late embryogenesis. J Cell Biol 2005, 169:941-952.
-
(2005)
J Cell Biol
, vol.169
, pp. 941-952
-
-
Shen, T.L.1
Park, A.Y.2
Alcaraz, A.3
Peng, X.4
Jang, I.5
Koni, P.6
Flavell, R.A.7
Gu, H.8
Guan, J.L.9
-
56
-
-
14544277546
-
Identification and analysis of alternative splicing events conserved in human and mouse
-
Yeo GW, Van Nostrand E, Holste D, Poggio T, Burge CB: Identification and analysis of alternative splicing events conserved in human and mouse. Proc Natl Acad Sci USA 2005, 102:2850-2855.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 2850-2855
-
-
Yeo, G.W.1
Van Nostrand, E.2
Holste, D.3
Poggio, T.4
Burge, C.B.5
-
57
-
-
0013394889
-
Mechanisms of alternative pre-messenger RNA splicing
-
Black DL: Mechanisms of alternative pre-messenger RNA splicing. Annu Rev Biochem 2003, 72:291-336.
-
(2003)
Annu Rev Biochem
, vol.72
, pp. 291-336
-
-
Black, D.L.1
-
58
-
-
0036429269
-
Finding signals that regulate alternative splicing in the post-genomic era
-
reviews0008
-
Ladd AN, Cooper TA: Finding signals that regulate alternative splicing in the post-genomic era. Genome Biol 2002, 3:reviews0008.
-
(2002)
Genome Biol
, vol.3
-
-
Ladd, A.N.1
Cooper, T.A.2
-
59
-
-
3242888697
-
RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons
-
Fairbrother WG, Yeo GW, Yeh R, Goldstein P, Mawson M, Sharp PA, Burge CB: RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons. Nucleic Acids Res 2004, 32:W187-190.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Fairbrother, W.G.1
Yeo, G.W.2
Yeh, R.3
Goldstein, P.4
Mawson, M.5
Sharp, P.A.6
Burge, C.B.7
-
60
-
-
0037084825
-
Categorization and characterization of transcript-confirmed constitutively and alternatively spliced introns and exons from human
-
Clark F, Thanaraj TA: Categorization and characterization of transcript-confirmed constitutively and alternatively spliced introns and exons from human. Hum Mol Genet 2002, 11:451-464.
-
(2002)
Hum Mol Genet
, vol.11
, pp. 451-464
-
-
Clark, F.1
Thanaraj, T.A.2
-
61
-
-
0345865005
-
ASD: The Alternative Splicing Database
-
Thanaraj TA, Stamm S, Clark F, Riethoven JJ, Le Texier V, Muilu J: ASD: the Alternative Splicing Database. Nucleic Acids Res 2004, 32:D64-69.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Thanaraj, T.A.1
Stamm, S.2
Clark, F.3
Riethoven, J.J.4
Le Texier, V.5
Muilu, J.6
-
62
-
-
33644878582
-
ASD: A bioinformatics resource on alternative splicing
-
Stamm S, Riethoven JJ, Le Texier V, Gopalakrishnan C, Kumanduri V, Tang Y, Barbosa-Morais NL, Thanaraj TA: ASD: a bioinformatics resource on alternative splicing. Nucleic Acids Res 2006, 34:D46-55.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Stamm, S.1
Riethoven, J.J.2
Le Texier, V.3
Gopalakrishnan, C.4
Kumanduri, V.5
Tang, Y.6
Barbosa-Morais, N.L.7
Thanaraj, T.A.8
-
63
-
-
13844314248
-
The splicing regulatory element, UGCAUG, is phylogenetically and spatially conserved in introns that flank tissue-specific alternative exons
-
Minovitsky S, Gee SL, Schokrpur S, Dubchak I, Conboy JG: The splicing regulatory element, UGCAUG, is phylogenetically and spatially conserved in introns that flank tissue-specific alternative exons. Nucleic Acids Res 2005, 33:714-724.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 714-724
-
-
Minovitsky, S.1
Gee, S.L.2
Schokrpur, S.3
Dubchak, I.4
Conboy, J.G.5
-
64
-
-
0031828161
-
Ancient large-scale genome duplications: Phylogenetic and linkage analyses shed light on chordate genome evolution
-
Pebusque MJ, Coulier F, Birnbaum D, Pontarotti P: Ancient large-scale genome duplications: phylogenetic and linkage analyses shed light on chordate genome evolution. Mol Biol Evol 1998, 15:1145-1159.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 1145-1159
-
-
Pebusque, M.J.1
Coulier, F.2
Birnbaum, D.3
Pontarotti, P.4
-
65
-
-
10944230777
-
Duplication and divergence: The evolution of new genes and old ideas
-
Taylor JS, Raes J: Duplication and divergence: the evolution of new genes and old ideas. Annu Rev Genet 2004, 38:615-643.
-
(2004)
Annu Rev Genet
, vol.38
, pp. 615-643
-
-
Taylor, J.S.1
Raes, J.2
-
66
-
-
0242384751
-
Natural history and functional divergence of protein tyrosine kinases
-
Gu J, Gu X: Natural history and functional divergence of protein tyrosine kinases. Gene 2003, 317:49-57.
-
(2003)
Gene
, vol.317
, pp. 49-57
-
-
Gu, J.1
Gu, X.2
-
67
-
-
0032486285
-
Identification of a new Pyk2 isoform implicated in chemokine and antigen receptor signaling
-
Dikic I, Schlessinger J: Identification of a new Pyk2 isoform implicated in chemokine and antigen receptor signaling. J Biol Chem 1998, 273:14301-14308.
-
(1998)
J Biol Chem
, vol.273
, pp. 14301-14308
-
-
Dikic, I.1
Schlessinger, J.2
-
68
-
-
27244441641
-
The importance of being divisible by three in alternative splicing
-
Magen A, Ast G: The importance of being divisible by three in alternative splicing. Nucleic Acids Res 2005, 33:5574-5582.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5574-5582
-
-
Magen, A.1
Ast, G.2
-
69
-
-
0742323558
-
Nonsense-mediated mRNA decay: Splicing, translation and mRNP dynamics
-
Maquat LE: Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics. Nat Rev Mol Cell Biol 2004, 5:89-99.
-
(2004)
Nat Rev Mol Cell Biol
, vol.5
, pp. 89-99
-
-
Maquat, L.E.1
-
70
-
-
18344364099
-
Understanding alternative splicing: Towards a cellular code
-
Matlin AJ, Clark F, Smith CW: Understanding alternative splicing: towards a cellular code. Nat Rev Mol Cell Biol 2005, 6:386-398.
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, pp. 386-398
-
-
Matlin, A.J.1
Clark, F.2
Smith, C.W.3
-
71
-
-
0035369805
-
Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing
-
Brudno M, Gelfand MS, Spengler S, Zorn M, Dubchak I, Conboy JG: Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing. Nucleic Acids Res 2001, 29:2338-2348.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 2338-2348
-
-
Brudno, M.1
Gelfand, M.S.2
Spengler, S.3
Zorn, M.4
Dubchak, I.5
Conboy, J.G.6
-
72
-
-
0037450704
-
A vertebrate RNA-binding protein Fox-1 regulates tissue-specific splicing via the pentanucleotide GCAUG
-
Jin Y, Suzuki H, Maegawa S, Endo H, Sugano S, Hashimoto K, Yasuda K, Inoue K: A vertebrate RNA-binding protein Fox-1 regulates tissue-specific splicing via the pentanucleotide GCAUG. Embo J 2003, 22:905-912.
-
(2003)
Embo J
, vol.22
, pp. 905-912
-
-
Jin, Y.1
Suzuki, H.2
Maegawa, S.3
Endo, H.4
Sugano, S.5
Hashimoto, K.6
Yasuda, K.7
Inoue, K.8
-
73
-
-
27644455141
-
Homologues of the Caenorhabditis elegans Fox-1 protein are neuronal splicing regulators in mammals
-
Underwood JG, Boutz PL, Dougherty JD, Stoilov P, Black DL: Homologues of the Caenorhabditis elegans Fox-1 protein are neuronal splicing regulators in mammals. Mol Cell Biol 2005, 25:10005-10016.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 10005-10016
-
-
Underwood, J.G.1
Boutz, P.L.2
Dougherty, J.D.3
Stoilov, P.4
Black, D.L.5
-
74
-
-
17544367787
-
Tissue-dependent isoforms of mammalian Fox-1 homologs are associated with tissue-specific splicing activities
-
Nakahata S, Kawamoto S: Tissue-dependent isoforms of mammalian Fox-1 homologs are associated with tissue-specific splicing activities. Nucleic Acids Res 2005, 33:2078-2089.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2078-2089
-
-
Nakahata, S.1
Kawamoto, S.2
-
75
-
-
0042329506
-
Serine 732 phosphorylation of FAK by Cdk5 is important for microtubule organization, nuclear movement, and neuronal migration
-
Xie Z, Sanada K, Samuels BA, Shih H, Tsai LH: Serine 732 phosphorylation of FAK by Cdk5 is important for microtubule organization, nuclear movement, and neuronal migration. Cell 2003, 114:469-482.
-
(2003)
Cell
, vol.114
, pp. 469-482
-
-
Xie, Z.1
Sanada, K.2
Samuels, B.A.3
Shih, H.4
Tsai, L.H.5
-
76
-
-
0038070531
-
Adhering junction dynamics in the testis are regulated by an interplay of beta I-integrin and focal adhesion complex-associated proteins
-
Siu MK, Mruk DD, Lee WM, Cheng CY: Adhering junction dynamics in the testis are regulated by an interplay of beta I-integrin and focal adhesion complex-associated proteins. Endocrinology 2003, 144:2141-2163.
-
(2003)
Endocrinology
, vol.144
, pp. 2141-2163
-
-
Siu, M.K.1
Mruk, D.D.2
Lee, W.M.3
Cheng, C.Y.4
-
77
-
-
0034794132
-
Alternative spliced transcripts as cancer markers
-
Caballero OL, de Souza SJ, Brentani RR, Simpson AJ: Alternative spliced transcripts as cancer markers. Dis Markers 2001, 17:67-75.
-
(2001)
Dis Markers
, vol.17
, pp. 67-75
-
-
Caballero, O.L.1
de Souza, S.J.2
Brentani, R.R.3
Simpson, A.J.4
-
78
-
-
13944251747
-
Alterations of pre-mRNA splicing in cancer
-
Kalnina Z, Zayakin P, Silina K, Line A: Alterations of pre-mRNA splicing in cancer. Genes Chromosomes Cancer 2005, 42:342-357.
-
(2005)
Genes Chromosomes Cancer
, vol.42
, pp. 342-357
-
-
Kalnina, Z.1
Zayakin, P.2
Silina, K.3
Line, A.4
-
79
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994, 22:4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
80
-
-
84872275619
-
-
ClustalW
-
ClustalW [http://www.ebi.ac.uk/clustalw/index.html]
-
-
-
-
81
-
-
84872271894
-
-
Basic Local Alignment Search Tool (BLAST)
-
Basic Local Alignment Search Tool (BLAST) [http://www.ncbi.nih.gov/BLAST/]
-
-
-
-
83
-
-
8144225362
-
Variation in sequence and organization of splicing regulatory elements in vertebrate genes
-
Yeo G, Hoon S, Venkatesh B, Burge CB: Variation in sequence and organization of splicing regulatory elements in vertebrate genes. Proc Natl Acad Sci USA 2004, 101:15700-15705.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 15700-15705
-
-
Yeo, G.1
Hoon, S.2
Venkatesh, B.3
Burge, C.B.4
-
84
-
-
84872266635
-
-
Rescue-ESE
-
Rescue-ESE [http://genes.mit.edu/burgelab/rescue-ese/]
-
-
-
-
85
-
-
84872270017
-
-
Acescan2
-
Acescan2 [http://genes.mit.edu/acescan2/index.html]
-
-
-
-
86
-
-
84872265071
-
-
EBI ASD tools
-
EBI ASD tools [http://www.ebi.ac.uk/asd-srv/wb.cgi]
-
-
-
-
88
-
-
84872268819
-
-
GeneDoc
-
GeneDoc [http://www.psc.edu/biomed/genedoc]
-
-
-
-
89
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O: A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003, 52:696-704.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
90
-
-
23144433822
-
PHYML Online - A web server for fast maximum likelihood-based phylogenetic inference
-
Guindon S, Lethiec F, Duroux P, Gascuel O: PHYML Online - a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res 2005, 33:W557-559.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Guindon, S.1
Lethiec, F.2
Duroux, P.3
Gascuel, O.4
-
91
-
-
84872276381
-
-
Phyml
-
Phyml [http://atgc.lirmm.fr/phyml/]
-
-
-
-
92
-
-
84872277280
-
Protdist and Neighbour Joining algorythm
-
Protdist and Neighbour Joining algorythm [http://www.pasteur.fs/]
-
-
-
-
93
-
-
0029853148
-
WWW-query: An on-line retrieval system for biological sequence banks
-
Perriere G, Gouy M: WWW-query: an on-line retrieval system for biological sequence banks. Biochimie 1996, 78:364-369.
-
(1996)
Biochimie
, vol.78
, pp. 364-369
-
-
Perriere, G.1
Gouy, M.2
-
94
-
-
0027972713
-
Depolarization and neurotransmitters increase neuronal protein tyrosine phosphorylation
-
Siciliano JC, Gelman M, Girault JA: Depolarization and neurotransmitters increase neuronal protein tyrosine phosphorylation. J Neurochem 1994, 62:950-959.
-
(1994)
J Neurochem
, vol.62
, pp. 950-959
-
-
Siciliano, J.C.1
Gelman, M.2
Girault, J.A.3
-
95
-
-
0037436282
-
The exon 7-spliced Lck isoform in T lymphocytes: A potential regulator of p561ck signaling pathways
-
Germani A, Malherbe S, Rouer E: The exon 7-spliced Lck isoform in T lymphocytes: a potential regulator of p561ck signaling pathways. Biochem Biophys Res Commun 2003, 301:680-685.
-
(2003)
Biochem Biophys Res Commun
, vol.301
, pp. 680-685
-
-
Germani, A.1
Malherbe, S.2
Rouer, E.3
-
96
-
-
12744253685
-
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
-
Ovcharenko I, Loots GG, Giardine BM, Hou M, Ma J, Hardison RC, Stubbs L, Miller W: Mulan: multiple-sequence local alignment and visualization for studying function and evolution. Genome Res 2005, 15:184-194.
-
(2005)
Genome Res
, vol.15
, pp. 184-194
-
-
Ovcharenko, I.1
Loots, G.G.2
Giardine, B.M.3
Hou, M.4
Ma, J.5
Hardison, R.C.6
Stubbs, L.7
Miller, W.8
|