-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul,S. et al. (1990) Basic local alignment search tool. J Mol. Biol., 215, 403-410.
-
(1990)
J Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.1
-
2
-
-
9144232912
-
UniProt: The Universal Protein knowledgebase
-
Apweiler,R. et al. (2004) UniProt: The Universal Protein knowledgebase. Nucleic Acids Res., 32, D115-D119.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Apweiler, R.1
-
3
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner,M. et al. (2000) Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet., 25, 25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
-
4
-
-
0037245913
-
BIND: The biomolecular interaction network database
-
Bader,G. et al. (2003) BIND: The biomolecular interaction network database. Nucleic Acids Res., 31, 248-250.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 248-250
-
-
Bader, G.1
-
5
-
-
2442706422
-
An Overview of Ensembl
-
Birney,E. et al. (2004) An Overview of Ensembl. Genome Res., 14, 925-928.
-
(2004)
Genome Res.
, vol.14
, pp. 925-928
-
-
Birney, E.1
-
6
-
-
0345863927
-
The Unified Medical Language System (UMLS): Integrating biomedical terminology
-
Bodenreider,O. (2004) The Unified Medical Language System (UMLS): integrating biomedical terminology. Nucleic Acids Res., 32, 267-270.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 267-270
-
-
Bodenreider, O.1
-
7
-
-
0037255072
-
The Swiss-Prot protein knowledgebase and its supplement TrEMBL in 2003
-
Boeckmann,B. et al. (2003) The Swiss-Prot protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res., 31, 365-370.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 365-370
-
-
Boeckmann, B.1
-
8
-
-
9144252016
-
The Gene Ontology Annotation (GOA) Database: Sharing knowledge in Uniprot with Gene Ontology
-
Camon,E. et al. (2004) The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. Nucleic Acids Res., 32, 262-266.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 262-266
-
-
Camon, E.1
-
9
-
-
1042269470
-
GAPSCORE: Finding gene and protein names one word at a time
-
Chang,J. et al. (2004) GAPSCORE: Finding gene and protein names one word at a time. Bioinformatics, 20, 216-225.
-
(2004)
Bioinformatics
, vol.20
, pp. 216-225
-
-
Chang, J.1
-
10
-
-
2942549190
-
PreBIND and Textomy-mining the biomedical literature for protein-protein interactions using a support vector machine
-
Donaldson,I. et al. (2003) PreBIND and Textomy-mining the biomedical literature for protein-protein interactions using a support vector machine. BMC Bioinformatics, 4, 11.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 11
-
-
Donaldson, I.1
-
11
-
-
0037021409
-
Protein names and how to find them
-
Franzen,K. et al. (2002) Protein names and how to find them. Int. J. Med. Inf., 67.
-
(2002)
Int. J. Med. Inf.
, vol.67
-
-
Franzen, K.1
-
12
-
-
33747894065
-
Lll'05 challenge: Genic interaction extraction with alignments and finite state automata
-
Hakenberg,J., Plake,C., Leser,U., Kirsch,H. and Rebholz-Schuhmann,D. (2005) Lll'05 challenge: Genic interaction extraction with alignments and finite state automata. In Learning Language in Logic Workshop (LLL'05) at ICML 2005.
-
(2005)
Learning Language in Logic Workshop (LLL'05) at ICML 2005
-
-
Hakenberg, J.1
Plake, C.2
Leser, U.3
Kirsch, H.4
Rebholz-Schuhmann, D.5
-
13
-
-
3042786293
-
A gene network for navigating the literature
-
Hoffmann,R. and Valencia,A. (2004) A gene network for navigating the literature. Nat. Genet., 36, 664.
-
(2004)
Nat. Genet.
, vol.36
, pp. 664
-
-
Hoffmann, R.1
Valencia, A.2
-
14
-
-
27544448536
-
Implementing the iHOP concept for navigation of biomedical literature
-
Hoffmann,R. and Valencia,A. (2005) Implementing the iHOP concept for navigation of biomedical literature. Bioinformatics, 21 (Suppl. 2), ii252-ii258.
-
(2005)
Bioinformatics
, vol.21
, Issue.SUPPL. 2
-
-
Hoffmann, R.1
Valencia, A.2
-
15
-
-
1542400018
-
Automated extraction of mutation data from the literature: Application of MuteXt to G protein-coupled receptors and nuclear hormone receptors
-
Horn,F. et al. (2004) Automated extraction of mutation data from the literature: Application of MuteXt to G protein-coupled receptors and nuclear hormone receptors. Bioinformatics, 20, 557-568.
-
(2004)
Bioinformatics
, vol.20
, pp. 557-568
-
-
Horn, F.1
-
16
-
-
9544257285
-
iProLINK: An integrated protein resource for literature mining
-
Hu,Z. et al. (2004) iProLINK: An integrated protein resource for literature mining. Comput. Biol. Chem., 28 (5-6), 409-416.
-
(2004)
Comput. Biol. Chem.
, vol.28
, Issue.5-6
, pp. 409-416
-
-
Hu, Z.1
-
17
-
-
84873446609
-
Learning biological interactions from medline abstracts
-
Katrenko,S., Marshall,M., Roos,M. and Adriaans,P. (2005) Learning biological interactions from medline abstracts. In Learning Language in LogicWorkshop (LLL'05) at ICML 2005.
-
(2005)
Learning Language in LogicWorkshop (LLL'05) at ICML 2005
-
-
Katrenko, S.1
Marshall, M.2
Roos, M.3
Adriaans, P.4
-
18
-
-
22244459539
-
Text-mining and information-retrieval services for molecular biology
-
Krallinger,M. and Valencia,A. (2005) Text-mining and information-retrieval services for molecular biology. Genome Biol., 6, 224.
-
(2005)
Genome Biol.
, vol.6
, pp. 224
-
-
Krallinger, M.1
Valencia, A.2
-
19
-
-
0034707204
-
Using BLAST for identifying gene and protein names in journal articles
-
Krauthammer,M. et al. (2000) Using BLAST for identifying gene and protein names in journal articles. Gene, 259.
-
(2000)
Gene
, vol.259
-
-
Krauthammer, M.1
-
20
-
-
0034020913
-
SAWTED: Structure assignment with text description-enhanced detection of remote homologues with automated Swiss-Prot annotation comparisons
-
MacCallum,R. et al. (2000) SAWTED: Structure assignment with text description-enhanced detection of remote homologues with automated Swiss-Prot annotation comparisons. Bioinformatics, 16, 125-129.
-
(2000)
Bioinformatics
, vol.16
, pp. 125-129
-
-
MacCallum, R.1
-
21
-
-
33646883760
-
Conan: An integrative system for biomedical literature mining
-
In Bento,C., Cardoso,A. and Dias,G. (eds)
-
Malik,R. and Siebes,A. (2005) Conan: An integrative system for biomedical literature mining. In Bento,C., Cardoso,A. and Dias,G. (eds), LNAI 3808, EPIA05, pp. 248-259.
-
(2005)
LNAI 3808, EPIA05
, pp. 248-259
-
-
Malik, R.1
Siebes, A.2
-
22
-
-
3242881967
-
NLProt: Extracting protein names and sequences from papers
-
Mika,S. and Rost,B. (2004a) NLProt: Extracting protein names and sequences from papers. Nucleic Acids Res., 32.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Mika, S.1
Rost, B.2
-
23
-
-
9544222527
-
Protein names precisely peeled off free text
-
Mika,S. and Rost,B. (2004b) Protein names precisely peeled off free text. Bioinformatics, 20 (Suppl 1), I241-I247.
-
(2004)
Bioinformatics
, vol.20
, Issue.SUPPL. 1
-
-
Mika, S.1
Rost, B.2
-
24
-
-
14044254746
-
Textpresso: An ontology-based information retrieval and extraction system for biological literature
-
Muller,H. et al. (2004) Textpresso: An ontology-based information retrieval and extraction system for biological literature. PLoS Biol., 2, e309.
-
(2004)
PLoS Biol.
, vol.2
-
-
Muller, H.1
-
26
-
-
15744374330
-
Facts from text - Is text mining ready to deliver?
-
Rebholz-Schuhmann,D. et al. (2005) Facts from text - is text mining ready to deliver? PLoS Biol., 3, e65.
-
(2005)
PLoS Biol.
, vol.3
-
-
Rebholz-Schuhmann, D.1
-
28
-
-
0033905095
-
BoosTexter: A boosting-based system for text categorization
-
Schapire,R. and Singer,Y. (2000) BoosTexter: A boosting-based system for text categorization. Mach. Learn., 39, 153-168.
-
(2000)
Mach. Learn.
, vol.39
, pp. 153-168
-
-
Schapire, R.1
Singer, Y.2
-
29
-
-
0036678776
-
Tagging gene and protein names in biomedical text
-
Tanabe,L. and Wilbur,W. (2002) Tagging gene and protein names in biomedical text. Bioinformatics, 18, 1124-1132.
-
(2002)
Bioinformatics
, vol.18
, pp. 1124-1132
-
-
Tanabe, L.1
Wilbur, W.2
-
30
-
-
0036088133
-
DIP, the Database of Interacting Proteins: A research tool for studying cellular networks of protein interactions
-
Xenarios,I. et al. (2002) DIP, the Database of Interacting Proteins: A research tool for studying cellular networks of protein interactions. Nucleic Acids Res., 30, 303-305.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 303-305
-
-
Xenarios, I.1
|