Transcriptomic changes in developing kidney exposed to chronic hypoxia

Biochemical and Biophysical Research Communications

Volumn 349, Issue 1, 2006, Pages 329-338

  Iacobas, Dumitru A ^a   Fan, Chenhao ^a   Iacobas, Sanda ^a   Spray, David C ^a   Haddad, Gabriel G ^b  

^a ALBERT EINSTEIN COLLEGE OF MEDICINE   (United States)

^b UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

Author keywords

Apoptosis; Development; Gender difference; Gene expression; Growth factor; Heat shock protein; Maturation; Renal; Solute carrier

Indexed keywords

COMPLEMENTARY DNA;

AGING; ANIMAL EXPERIMENT; ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; DNA MICROARRAY; GENDER; GENE CONTROL; GENE EXPRESSION; GENETIC TRANSCRIPTION; HYPOXIA; KIDNEY DEVELOPMENT; MOUSE; NONHUMAN; PRIORITY JOURNAL; SEX DIFFERENCE;

AGING; ANIMALS; ANOXIA; APOPTOSIS; FEMALE; GENE EXPRESSION REGULATION, DEVELOPMENTAL; HEAT-SHOCK PROTEINS; HYDROGEN-ION CONCENTRATION; KIDNEY; MALE; MICE; SEX FACTORS; TIME FACTORS; TRANSCRIPTION, GENETIC;

EID: 33748417745     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2006.08.056     Document Type: Article

References (41)

1. Zakynthinos E., Douka E., Daniil Z., Konstantinidis K., Markaki V., and Zakynthinos S. Anuria due to acute bilateral renal vein occlusion after thrombolysis for pulmonary embolism. Int. J. Cardiol. 101 1 (2005) 163-166
2. Naeye R.L. Organ and cellular development in mice growing at simulated high altitude. Lab. Invest. 15 4 (1966) 700-706
3. Ehlenz K. Regulation of blood volume-implications for cardiovascular pathophysiology in sleep apnoea. J. Sleep Res. 4 S1 (1995) 30-33
4. Haase V.H. The VHL tumor suppressor in development and disease: functional studies in mice by conditional gene targeting. Semin. Cell Dev. Biol. 16 4-5 (2005) 564-574
5. Liang M., Cowley Jr. A.W., Hessner M.J., Lazar J., Basile D.P., and Pietrusz J.L. Transcriptome analysis and kidney research: toward systems biology. Kidney Int. 67 6 (2005) 2114-2122
6. Basile D.P., Fredrich K., Alausa M., Vio C.P., Liang M., Rieder M.R., Greene A.S., and Cowley Jr. A.W. Identification of persistently altered gene expression in the kidney after functional recovery from ischemic acute renal failure. Am. J. Physiol. Ren. Physiol. 288 5 (2005) F953-F963
7. Kusaka M., Yamada K., Kuroyanagi Y., Terauchi A., Kowa H., Kurahashi H., and Hoshinaga K. Gene expression profile in rat renal isografts from brain dead donors. Transplant. Proc. 37 1 (2005) 364-366
8. Meissner U., Hanisch C., Ostreicher I., Kerr I., Hofbauer K.H., Blum W.F., Allabauer I., Rascher W., and Dotsch J. Differential regulation of leptin synthesis in rats during short-term hypoxia and short-term carbon monoxide inhalation. Endocrinology 146 1 (2005) 215-220
9. Eddy A.A. Progression in chronic kidney disease. Adv. Chronic Kidney Dis. 12 4 (2005) 353-365 Review
10. Zhou D., Xue J., Gavrialov O., and Haddad G.G. Na+/H+ exchanger 1 deficiency alters gene expression in mouse brain. Physiol. Genomics 18 3 (2004) 319-331
11. Fan C., Iacobas D.A., Zhou D., Chen Q., Lai J.K., Gavrialov O., and Haddad G.G. Gene expression and phenotypic characterization of mouse heart after chronic constant or intermittent hypoxia. Physiol. Genomics 22 (2005) 292-307
12. Mushiroda T., Saito S., Tanaka Y., Takasaki J., Kamatani N., Beck Y., Tahara H., Nakamura Y., and Ohnishi Y. A model of prediction system for adverse cardiovascular reactions by calcineurin inhibitors among patients with renal transplants using gene-based single-nucleotide polymorphisms. J. Hum. Genet. 50 9 (2005) 442-447
13. Jung J.S., Lee R.H., Koh S.H., and Kim Y.K. Changes in expression of sodium cotransporters and aquaporin-2 during ischemia-reperfusion injury in rabbit kidney. Ren. Fail. 22 4 (2000) 407-421
14. Thurman J.M., Royer P.A., Ljubanovic D., Dursun B., Lenderink A.M., Edelstein C.L., and Holers V.M. Treatment with an inhibitory monoclonal antibody to mouse factor B protects mice from induction of apoptosis and renal ischemia/reperfusion injury. J. Am. Soc. Nephrol. 17 3 (2006) 707-715
15. Brand-Schieber E., Werner P., Iacobas D.A., Iacobas S., Beelitz M., Lowery S.L., Spray D.C., and Scemes E. Connexin43, the major gap junction protein of astrocytes, is down regulated in an animal model of multiple sclerosis. J. Neurosci. Res. 80 (2005) 798-808
16. Iacobas D.A., Iacobas S., Urban-Maldonado M., and Spray D.C. Sensitivity of the brain transcriptome to connexin ablation. Biochim. Biophys. Acta 1711 2 (2005) 183-196
17. Iacobas D.A., Iacobas S., Li W.E., Zoidl G., Dermietzel R., and Spray D.C. Genes controlling multiple functional pathways are transcriptionally regulated in connexin43 null mouse heart. Physiol. Genomics 20 (2005) 211-223
18. Iacobas D.A. Medical Biostatistics. third Eng ed. (1997), Bucura Mond, Bucharest pp. 96-98, 183-195
19. Draghici S. Data Analysis Tools for DNA Microarrays (2003), Chapman and Hall, Boca Raton-London-New York, Washington, DC pp. 223-224
20. Stekel D. Microarray Bioinformatics (2003), Cambridge University Press, Cambridge pp.133-134
21. Iacobas D.A., Iacobas S., and Spray D.C. Use of cDNA arrays to explore gene expression in genetically manipulated mice and cell lines. In: Dhein S., Mhr F.W., and Delmar M. (Eds). Practical Methods in Cardiovascular Research (2005), Springer-Verlag, Berlin-Heidelberg-New York 907-915
22. Iacobas D.A., Urban-Maldonado M., Iacobas S., Scemes E., and Spray D.C. Array analysis of gene expression in connexin-43 null astrocytes. Physiol. Genomics 15 3 (2003) 177-190
23. Iacobas D.A., Urban M., Massimi A., Iacobas S., and Spray D.C. Hits and misses from gene expression ratio measurements in cDNA microarray studies. J. Biomol. Tech. 13 3 (2002) 143-157
24. Rouschop K.M., Sewnath M.E., Claessen N., Roelofs J.J., Hoedemaeker I., van der Neut R., Aten J., Pals S.T., Weening J.J., and Florquin S. CD44 deficiency increases tubular damage but reduces renal fibrosis in obstructive nephropathy. J. Am. Soc. Nephrol. 15 3 (2004) 674-686
25. 3-dependent transporters in Na+/H+ exchanger isoform 1 null mutant mouse brain. Neuroscience 122 1 (2003) 37-46
26. de Almeida C.J., Chiarini L.B., da Silva J.B., e Silva P.M., Martins M.A., and Linden R. The cellular prion protein modulates phagocytosis and inflammatory response. J. Leukoc. Biol. 77 2 (2005) 238-246
27. Mastrianni J.A., Curtis M.T., Oberholtzser J.C., Da Costa M.M., DeArmond S., Prusiner S.B., and Garben J.Y. Prion disease (PrP-A117V) presenting with ataxia instead of dementia. Neurology 45 (1995) 2042-2050
28. Nishida Y., Sodeyama N., Toru Y., Toru S., Kitamoto T., and Mizusawa H. Creutzfeldt-Jakob disease with a novel insertion and codon 219 Lys/Lys polymorphism in PRNP. Neurology 63 10 (2004) 978-1979
29. Gambetti P., and Parchi P. Insomnia in prion diseases: sporadic and familial. (Editorial) New Engl. J. Med. 340 (1999) 1675-1677
30. Cacabelos R. Genomic characterization of Alzheimer's disease and genotype-related phenotypic analysis of biological markers in dementia. Pharmacogenomics 5 8 (2004) 1049-1105
31. Ozer E.A., Yilmaz O., Akhisaroglu M., Tuna B., Bakiler A.R., and Ozer E. Heat shock protein 70 expression in neonatal rats after hypoxic stress. J. Matern. Fetal Neonatal Med. 12 2 (2002) 112-117
32. Turman M.A., and Rosenfeld S.L. Heat shock protein 70 over expression protects LLC-PK1 tubular cells from heat shock but not hypoxia. Kidney Int. 55 1 (1999) 189-197
33. Vicencio A.G., Bidmon B., Ryu J., Reidy K., Thulin G., Mann A., Gaudio K.M., Kashgarian M., and Siegel N.J. Developmental expression of HSP-72 and ischemic tolerance of the immature kidney. Pediatr. Nephrol. 18 2 (2003) 85-91
34. Vicencio A.G., Lee C.G., Cho S.J., Eickelberg O., Chuu Y., Haddad G.G., and Elias J.A. Conditional overexpression of bioactive transforming growth factor-beta1 in neonatal mouse lung: a new model for bronchopulmonary dysplasia?. Am. J. Respir. Cell Mol. Biol. 31 6 (2004) 650-656
35. Riordan M., Sreedharan R., Wang S., Thulin G., Mann A., Stankewich M., Van Why S., Kashgarian M., and Siegel N.J. HSP70 binding modulates detachment of Na-K-ATPase following energy deprivation in renal epithelial cells. Am. J. Physiol. Renal Physiol. 288 6 (2005) F1236-F1242
36. Schwab K., Patterson L.T., Aronow B.J., Luckas R., Liang H.C., and Potter S.S. A catalogue of gene expression in the developing kidney. Kidney Int. 64 5 (2003) 588-1604
37. Fraser H.B., Khaitovich P., Plotkin J.B., Paabo S., and Eisen M.B. Aging and gene expression in the primate brain. PLoS Biol. 3 9 (2005) e274
38. Fiebeler A., Park J.K., Muller D.N., Lindschau C., Mengel M., Merkel S., Banas B., Luft F.C., and Haller H. Growth arrest specific protein 6/Axl signaling in human inflammatory renal diseases. Am. J. Kidney Dis. 43 2 (2004) 286-295
39. Yoshida T., Kurella M., Beato F., Min H., Ingelfinger J.R., Stears R.L., Swinford R.D., Gullans S.R., and Tang S.S. Monitoring changes in gene expression in renal ischemia-reperfusion in the rat. Kidney Int. 61 5 (2002) 1646-1654
40. Addis M., Loi M., Lepiani C., Cau M., and Melis M.A. OCRL mutation analysis in Italian patients with Lowe syndrome. Hum. Mutat. 23 5 (2004) 524-525
41. Erneux C., Govaerts C., Communi D., and Pesesse X. The diversity and possible functions of the inositol polyphosphate 5-phosphatases. Biochim. Biophys. Acta 1436 1-2 (1998) 185-199