Circadian rhythms lit up in Chlamydomonas

Genome Biology

Volumn 7, Issue 4, 2006, Pages

  Breton, Ghislain ^a   Kay, Steve A ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; CRYPTOCHROME; FIREFLY LUCIFERASE; GENE PRODUCT; GREEN FLUORESCENT PROTEIN; HELIX LOOP HELIX PROTEIN; LUCIFERASE; LUCIFERIN; LUX PROTEIN; PHYTOCHROME; REGULATOR PROTEIN; REPRESSOR PROTEIN; TOC1 PROTEIN; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG; ZTL PROTEIN;

BIOLUMINESCENCE; CHLAMYDOMONAS REINHARDTII; CIRCADIAN RHYTHM; COMPARATIVE GENE MAPPING; DNA MICROARRAY; EXPRESSED SEQUENCE TAG; GENE EXPRESSION PROFILING; GENE INSERTION; GENETIC ANALYSIS; GENETIC ENGINEERING; GENOMICS; HIGH THROUGHPUT SCREENING; MASS SPECTROMETRY; MOLECULAR CLOCK; MOLECULAR GENETICS; MUTATIONAL ANALYSIS; NONHUMAN; PHOTOTAXIS; PROTEIN DNA INTERACTION; PROTEIN PROTEIN INTERACTION; REPORTER GENE; SEQUENCE ANALYSIS; SHORT SURVEY; ANIMAL; BIOLOGICAL MODEL; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; REVIEW;

CHLAMYDOMONAS; CHLAMYDOMONAS REINHARDTII; CHLOROPHYTA;

ANIMALS; CHLAMYDOMONAS REINHARDTII; CIRCADIAN RHYTHM; GENE EXPRESSION REGULATION; GENES, REPORTER; GENOMICS; LUCIFERASES; MODELS, GENETIC;

EID: 33748416375     PISSN: 1474760X     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2006-7-4-215     Document Type: Short Survey

References (30)

1. Gutman BL, Niyogi KK: Chlamydomonos and Arabidopsis. A dynamic duo. Plant Physiol 2004, 135:607-610.
2. Harris EH: Chlamydomonas as a model organism. Annu Rev Plant Physiol Plant Mol Biol 2001, 52:363-406.
3. Grossman AR, Harris EE, Hauser C, Lefebvre PA, Martinez D, Rokhsar D, Shrager J, Silflow CD, Stern D, Vallon O, Zhang Z: Chlamydomonas reinhardtii at the crossroads of genomics. Eukaryot Gell 2003, 2:1137-1150.
4. Chlamydomonas Center [http://www.chlamy.org]
5. Li JB, Gerdes JM, Haycraft CJ, Fan Y, Teslovich TM, May-Simera H, Li H, Blacque OE, Li L, Leitch CC, et al.: Comparative genomics identifies a flagellar and basal body proteome that includes the BBS5 human disease gene. Cell 2004, 117:541-552.
6. Avidor-Reiss T, Maer AM, Koundakjian E, Polyanovsky A, Keil T, Subramaniam S, Zuker CS: Decoding cilia function: defining specialized genes required for compartmentalized cilia biogenesis. Cell 2004, 117:527-539.
7. Shiu SH, Li WH: Origins, lineage-specific expansions, and multiple losses of tyrosine kinases in eukaryotes. Mol Biol Evol 2004, 21:828-840.
8. Bisova K, Krylov DM, Umen JG: Genome-wide annotation and expression profiling of cell cycle regulatory genes in Chlomydomonas reinhardtii. Plant Physiol 2005, 137:475-491.
9. Kucho K, Okamoto K, Tabata S, Fukuzawa H, Ishiura M: Identification of novel clock-controlled genes by cDNA macroarray analysis in Chlamydomonas reinhardtii. Plant Mol Biol 2005, 57:889-906.
10. Eberhard S, Jain M, Im CS, Pollock S, Shrager J, Lin Y, Peek AS, Grossman AR: Generation of an oligonucleotide array for analysis of gene expression in Chiamydomonas reinhardtii. Curr Genet 2006, 49:106-124.
11. Yamaguchi K, Beligni MV, Prieto S, Haynes PA, McDonald WH, Yates JR 3rd, Mayfield SP: Proteomic characterization of the Chlamydomonas reinhardtii chloroplast ribosome. Identification of proteins unique to the 70 S ribosome. J Biol Chem 2003, 278:33774-33785.
12. Wagner V, Gessner G, Mittag M: Functional proteomics: a promising approach to find novel components of the circadian system. Chronobiol Int 2005, 22:403-415.
13. Rymarquis LA, Handley JM, Thomas M, Stern DB. Beyond complementation. Map-based cloning in Chlamydomonas reinhardtii. Plant Physiol 2005, 137:557-566.
14. Dent RM, Haglund CM, Chin BL, Kobayashi MC, Niyogi KK: Functional genomics of eukaryotic photosynthesis using insertional mutagenesis of Chlamydomonas reinhardtii. Plant Physiol 2005, 137:545-556.
15. Matsuo T, Onai K, Okamoto K, Minagawa J, Ishiura M: Real-time monitoring of chloroplast gene expression by a luciferase reporter: evidence for nuclear regulation of chloroplast circadian period. Mol Cell Biol 2006, 26:863-870.
16. Welsh DK, Imaizumi T, Kay SA: Real-time reporting of circadian-regulated gene expression by luciferase imaging in plants and mammalian cells. Methods Enzymol 2005, 393:269-288.
17. Fuhrmann M, Hausherr A, Ferbitz L, Schodl T, Heitzer M, Hegemann P. Monitoring dynamic expression of nuclear genes in Chlamydomonas reinhardtii by using a synthetic luciferase reporter gene. Plant Mol Biol 2004, 55:869-881.
18. Mayfield SP, Schultz J: Development of a luciferase reporter gene, luxCt, for Chlamydomonas reinhardtii chloroplast. Plant J 2004,37:449-458.
19. Minko I, Holloway SP, Nikaido S, Carter M, Odom OW, Johnson CH, Herrin DL: Renilla luciferase as a vital reporter for chloroplast gene expression in Chlamydomonas. Mol Gen Genet 1999, 262:421-425.
20. Okamoto K, Onai K, Ezaki N, Ofuchi T, Ishiura M: An automated apparatus for the real-time monitoring of bioluminescence in plants. Anal Biochem 2005, 340:187-192.
21. Okamoto K, Onai K, Ishiura M: RAP, an integrated program for monitoring bioluminescence and analyzing circadian rhythms in real time. Anal Biochem 2005, 340:193-200.
22. Bruce VG: The biological clock in Chlomydomonas reinhardtii. J Protozoal 1970, 17:328-334.
23. Mittag M, Wagner V: The circadian clock of the unicellular eukaryotic model organism Chlomydomonas reinhardtii. Biol Chem 2003, 384:689-695.
24. Bruce VG: Mutants of the biological clock in Chlamydomonas reinhardi. Genetics 1972, 70:537-548.
25. Harmon FG, Imaizumi T, Kay SA: The plant circadian clock: review of a clockwork Arabidopsis. In Endogenous Plant Rhythms, Volume 21. Edited by Hall A, McWatters HG. Oxford: Blackwell; 2005:1-23.
26. Panda S, Hogenesch JB, Kay SA: Circadian rhythms from flies to human. Nature 2002, 417:329-335.
27. Mittag M, Kiaulehn S, Johnson CH: The circadian clock in Chlamydomonas reinhardtii. What is it for? What is it similar to? Plant Physiol 2005, 137:399-409.
28. Schultz TF, Kay SA: Circadian clocks in daily and seasonal control of development. Science 2003, 301:326-328.
29. Bell-Pedersen D, Cassone VM, Earnest DJ, Golden SS, Hardin PE, Thomas TL, Zoran MJ: Circadian rhythms from multiple oscillators: lessons from diverse organisms. Nat Rev Genet 2005, 6:544-556.
30. Hirayama J, Sassone-Corsi P: Structural and functional features pf transcription factors controlling the circadian clock. Curr Opin Genet Dev 2005, 15:548-556.