Mass spectrometry reveals specific and global molecular transformations during viral infection

Journal of Proteome Research

Volumn 5, Issue 9, 2006, Pages 2405-2416

  Go, Eden P ^a   Wikoff, William R ^a   Shen, Zhouxin ^a,b   O'Maille, Grace ^a   Morita, Hirotoshi ^a   Conrads, Thomas P ^c   Nordstrom, Anders ^a   Trauger, Sunia A ^a   Uritboonthai, Wilasinee ^a   Lucas, David A ^c   Chan, King C ^c   Veenstra, Timothy D ^c   Lewicki, Hanna ^a   Oldstone, Michael B ^a   Schneemann, Anette ^a   Siuzdak, Gary ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

^b Mass Consortium Corporation   (United States)

^c SAIC FREDERICK INC   (United States)

Author keywords

Isotope labeling; Mass spectrometry; Metabolites; Protein regulation; Viral infection; Virus

Indexed keywords

CELL PROTEIN; CELLULAR AND FLOCK HOUSE VIRUS PROTEIN; PHOSPHOLIPID; UNCLASSIFIED DRUG; VIRUS PROTEIN;

ANIMAL CELL; APOPTOSIS; ARTICLE; CELL DEATH; CELL TRANSFORMATION; DOWN REGULATION; DROSOPHILA MELANOGASTER; HELA CELL; HOST; HUMAN; HUMAN CELL; ISOTOPE LABELING; MASS SPECTROMETRY; MEASLES VIRUS; MOLECULAR DYNAMICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; QUANTITATIVE ANALYSIS; RNA INTERFERENCE; UPREGULATION; VIRUS ASSEMBLY; VIRUS INFECTION; VIRUS REPLICATION;

ANIMALS; CELLS, CULTURED; DROSOPHILA MELANOGASTER; GENE EXPRESSION REGULATION; HELA CELLS; HUMANS; MASS SPECTROMETRY; MEASLES VIRUS; NODAVIRIDAE; OXYGEN ISOTOPES; PROTEINS; PROTEOMICS; RNA VIRUS INFECTIONS;

FLOCK HOUSE VIRUS; MEASLES VIRUS;

EID: 33748302761     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr060215t     Document Type: Article

References (59)

1. Flint, S. J. Principles of Virology Molecular Biology, Pathogenesis, and Control of Animal Viruses, 2nd ed.; ASM Press: Washington, DC, 2004.
2. Mendez, J.; Audicana, A.; Isern, A.; Llaneza, J.; Moreno, B.; Tarancon, M. L.; Jofre, J.; Lucena, F. J. Virol. Methods 2004, 117 (1), 19-25.
3. Barry, R.; Soloviev, M. Proteomics. 2004, 4 (12), 3717-3726.
4. Shieh, B.; Li, C. Retrovirology 2004, 1 (1), 11.
5. Fruh, K.; Simmen, K.; Luukkonen, B. G.; Bell, Y. C.; Ghazal, P. Drug Discovery Today 2001, 6 (12), 621-627.
6. Piersanti, S.; Martina, Y.; Cherubini, G.; Avitabile, D.; Saggio, I. Am. J. PharmacoGenomics 2004, 4 (6), 345-356.
7. Snijders, A. M.; Meijer, G. A.; Brakenhoff, R. H.; van den Brule, A. J.; van Diest, P. J. Mol. Pathol. 2000, 53 (6), 289-294.
8. Aebersold, R. J. Infect. Dis. 2003, 187, S315-S320.
9. Flory, M. R.; Gingras, A. C.; Keller, A.; Lee, H.; Li, X. J.; Nesvizhskii, A.; Ranish, J.; Ye, M. L.; Zhang, H.; Aebersold, R. Eur. J. Cell Biol. 2004, 83, 88.
10. Tian, Q.; Stepaniants, S. B.; Mao, M.; Weng, L.; Feetham, M. C.; Doyle, M. J.; Yi, E. C.; Dai, H.; Thorsson, V.; Eng, J.; Goodlett, D.; Berger, J. P.; Gunter, B.; Linseley, P. S.; Stoughton, R. B.; Aebersold, R.; Collins, S. J.; Hanlon, W. A.; Hood, L. E. Mol. Cell. Proteomics. 2004, 3 (10), 960-969.
11. Sechi, S.; Oda, Y. Drug Discovery Today 2004, 9 (2), S41-S46.
12. Sechi, S. Proteomics Nephrol. 2004, 141, 59-78.
13. Ferguson, P. L.; Smith, R. D. Annu. Rev. Biophys. Biomol. Struct. 2003, 32, 399-424.
14. Lill, J. Mass Spectrom. Rev. 2003, 22 (3), 182-194.
15. Gygi, S. P.; Rist, B.; Gerber, S. A.; Turecek, F.; Gelb, M. H.; Aebersold, R. Nat. Biotechnol. 1989, 17 (10), 994-999.
16. Mann, M. Nat. Biotechnol. 1999, 17 (10), 954-955.
17. Brown, K. J.; Fenselau, C. J. Proteome Res. 2004, 3 (3), 455-462.
18. Fenselau, C.; Reynolds, K. Chem. Abstr. 2003, 226, U336.
19. Heller, M.; Mattou, H.; Menzel, C.; Yao, X. D. J. Am. Soc. Mass Spectrom. 2003, 14 (7), 704-718.
20. Yao, X.; Freas, A.; Ramirez, J.; Demirev, P. A.; Fenselau, C. Anal. Chem. 2001, 73 (13), 2836-2842.
21. Yao, X. D.; Afonso, C.; Fenselau, C. J. Proteome Res. 2003, 2 (2), 147-152.
22. Hsu, J. L.; Huang, S. Y.; Chow, N. H.; Chen, S. H. Anal. Chem. 2003, 75 (24), 6843-6852.
23. Peters, E. C.; Horn, D. M.; Tully, D. C.; Brock, A. Rapid Commun. Mass Spectrom. 2001, 15 (24), 2387-2392.
24. Chakraborty, A.; Regnier, F. E. J. Chromatogr., A 2002, 949 (1-2), 173-184.
25. Goodlett, D. R.; Keller, A.; Watts, J. D.; Newitt, R.; Yi, E. C.; Purvine, S.; Eng, J. K.; von Haller, P.; Aebersold, R.; Kolker, E. Rapid Commun. Mass Spectrom. 2001, 15 (14), 1214-1221.
26. Smith, R. D.; Anderson, G. A.; Lipton, M. S.; Masselon, C.; Pasa-Tolic, L.; Udseth, H.; Belov, M.; Shen, Y.; Veenstra, T. D. Adv. Protein Chem. 2003, 65, 85-131.
27. Smith, R. D.; Shen, Y.; Tang, K. Acc. Chem. Res. 2004, 37 (4), 269-278.
28. Zimmer, J. S.; Monroe, M. E.; Qian, W. J.; Smith, R. D. Mass Spectrom. Rev. 2006, 25 (3), 450-482.
29. Callister, S. J.; Barry, R. C.; Adkins, J. N.; Johnson, E. T.; Qian, W. J.; Webb-Robertson, B. J.; Smith, R. D.; Lipton, M. S. J. Proteome. Res. 2006, 5 (2), 277-286.
30. Radulovic, D.; Jelveh, S.; Ryu, S.; Hamilton, T. G.; Foss, E.; Mao, Y.; Emili, A. Mol. Cell. Proteomics 2004, 3 (10), 984-997.
31. Wang, W.; Zhou, H.; Lin, H.; Roy, S.; Shaler, T. A.; Hill, L. R.; Norton, S.; Kumar, P.; Anderle, M.; Becker, C. H. Anal. Chem. 2003, 75 (18), 4818-4826.
32. Silva, J. C.; Denny, R.; Dorschel, C.; Gorenstein, M. V.; Li, G. Z.; Richardson, K.; Wall, D.; Geromanos, S. J. Mol. Cell. Proteomics 2006, 5 (4), 589-607.
33. Fang, R.; Elias, D. A.; Monroe, M. E.; Shen, Y.; McIntosh, M.; Wang, P.; Goddard, C. D.; Callister, S. J.; Moore, R. J.; Gorby, Y. A.; Adkins, J. N.; Fredrickson, J. K.; Lipton, M. S.; Smith, R. D. Mol. Cell. Proteomics 2006, 5 (4), 714-725.
34. Smith, C. A.; Want, E. J.; O'Maille, G.; Abagyan, R.; Siuzdak, G. Anal. Chem. 2006, 78 (3), 779-787.
35. Dasgupta, R.; Cheng, L. L.; Bartholomay, L. C.; Christensen, B. M. J. Gen. Virol. 2003, 84, 1789-1797.
36. Price, B. D.; Rueckert, R. R.; Ahlquist, P. Proc. Natl. Acad. Sci. U.S.A. 1936, 93 (18), 9465-9470.
37. Price, B. D.; Roeder, M.; Ahlquist, P. J. Virol. 2000, 74 (24), 11724-11733.
38. Schneemann, A.; Reddy, V.; Johnson, J. E. Adv. Virus Res. 1998, 50, 381-446.
39. Li, H.; Li, W. X.; Ding, S. W. Science 2002, 296 (5571), 1319-1321.
40. Fujinami, R. S.; Oldstone, M. B. Nature 1979, 279 (5713), 529-530.
41. Zambon, R. A.; Nandakumar, M.; Vakharia, V. N.; Wu, L. P. Proc. Natl. Acad. Sci. U.S.A. 2005, 102 (20), 7257-7262.
42. Shen, Z. X.; Thomas, J. J.; Averbuj, C.; Broo, K. M.; Engelhard, M.; Crowell, J. E.; Finn, M. G.; Siuzdak, G. Anal. Chem. 2001, 73 (3), 612-619.
43. Fujinami, R. S.; Oldstone, M. B. J. Immunol. 1980, 125 (1), 78-85.
44. Johnson, K. L.; Ovsyannikova, I. G.; Poland, G. A.; Muddiman, D. C. J. Proteome. Res. 2005, 4 (6), 2243-2249.
45. Friesen, P.; Scotti, P.; Longworth, J.; Rueckert, R. J. Virol. 1980, 35 (3), 741-747.
46. Friesen P.; Rueckert, R. J. Virol 1981, 37 (2), 876-886.
47. Fisher, A. J.; McKinney, B. R.; Wery, J. P.; Johnson, J. E. Acta Crystallogr., B 1992, 48 (Pt 4), 515-520.
48. Fisher, A. J.; McKinney, B. R.; Schneemann, A.; Rueckert, R. R.; Johnson, J. E. J. Virol. 1993, 67 (5), 2950-2953.
49. Royet, J.; Reichhart, J. M.; Hoffmann, J. A. Curr. Opin. Immunol. 2005, 77 (1), 11-17.
50. Dostert, C.; Jouanguy, E.; Irving, P.; Troxler, L.; Galiana-Arnoux, D.; Hetru, C.; Hoffmann, J. A.; Imler, J. L. Nat. Immunol. 2005, 6 (9), 946-953.
51. Chromy, L. R.; Pipas, J. M.; Garcea, R. L. Proc. Natl. Acad. Sci. U.S.A. 2003, 100 (18), 10477-10482.
52. Brugger, B.; Erben, G.; Sandhoff, R.; Wieland, F. T.; Lehmann, W. D. Proc. Natl. Acad. Sci. U.S.A. 1997, 94 (6), 2339-2344.
53. Kabarowski, J. H.; Zhu, K.; Le, L. Q.; Witte, O. N.; Xu, Y. Science 2001, 293 (5530), 702-705.
54. Kabarowski, J. H.; Xu, Y.; Witte, O. N. Biochem. Pharmacol. 2002, 64 (2), 161-167.
55. Gunther-Ausborn, S.; Praetor, A.; Stegmann, T. J. Biol. Chem. 1995, 270 (49), 29279-29285.
56. Gunther-Ausborn, S.; Stegmann, T. Virology 1997, 235 (2), 201-208.
57. Spivak, S. G.; Kisel, M. A.; Yakovleva, G. A. Russ. J. Plant Physiol. 2003, 50 (3), 293-296.
58. Korotaeva, A. A.; Cheglakov, I. B.; Morozkin, A. D.; Suslova, I. V.; Prokazova, N. V. Membr. Cell Biol. 1997, 10 (5), 521-534.
59. Lauber, K.; Blumenthal, S. G.; Waibel, M.; Wesselborg, S. Mol. Cell 2004, 14 (3), 277-287.