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Volumn 21, Issue 5, 2006, Pages 333-339

Polymerase chain reaction-based denaturing gradient gel electrophoresis in the evaluationof oral microbiota

Author keywords

Dental plaque; Fluoride dentifrice; Oral microbes; Polymerase chain reaction denaturing gradient gel electrophoresis; Prophylactic treatment

Indexed keywords

BACTERIAL DNA; DNA 16S; DNA FRAGMENT; FLUORIDE; GENOMIC DNA; PRIMER DNA; TOOTHPASTE;

EID: 33747617777     PISSN: 09020055     EISSN: 1399302X     Source Type: Journal    
DOI: 10.1111/j.1399-302X.2006.00301.x     Document Type: Article
Times cited : (26)

References (38)
  • 2
    • 0031066271 scopus 로고    scopus 로고
    • Studies on stannous fluoride toothpaste and gel (2). Effects on salivary bacterial counts and plaque regrowth in vivo
    • Addy M, Greenman J, Renton-Harper P, Newcombe R, Doherty F. Studies on stannous fluoride toothpaste and gel (2). Effects on salivary bacterial counts and plaque regrowth in vivo. J Clin Periodontol 1997: 24: 86-91.
    • (1997) J Clin Periodontol , vol.24 , pp. 86-91
    • Addy, M.1    Greenman, J.2    Renton-Harper, P.3    Newcombe, R.4    Doherty, F.5
  • 3
    • 13844316608 scopus 로고    scopus 로고
    • The comparative efficacy of stabilized stannous fluoride/sodium hexametaphosphate dentifrice and sodium fluoride/triclosan/copolymer dentifrice for the control of gingivitis: A 6-month randomized clinical study
    • Archila L, Bartizek RD, Winston JL, Biesbrock AR, McClanahan SF, He T. The comparative efficacy of stabilized stannous fluoride/sodium hexametaphosphate dentifrice and sodium fluoride/triclosan/copolymer dentifrice for the control of gingivitis: a 6-month randomized clinical study. J Periodontol 2004: 75: 1592-1599.
    • (2004) J Periodontol , vol.75 , pp. 1592-1599
    • Archila, L.1    Bartizek, R.D.2    Winston, J.L.3    Biesbrock, A.R.4    McClanahan, S.F.5    He, T.6
  • 4
    • 0030895234 scopus 로고    scopus 로고
    • A comparison of intraoral antimicrobial effects of stabilized stannous fluoride dentifrice, baking soda/peroxide dentifrice, conventional NaF dentifrice and essential oil mouthrinse
    • Bacca LA, Leusch M, Lanzalaco AC et al. A comparison of intraoral antimicrobial effects of stabilized stannous fluoride dentifrice, baking soda/peroxide dentifrice, conventional NaF dentifrice and essential oil mouthrinse. J Clin Dent 1997: 8: 54-61.
    • (1997) J Clin Dent , vol.8 , pp. 54-61
    • Bacca, L.A.1    Leusch, M.2    Lanzalaco, A.C.3
  • 5
    • 0036803159 scopus 로고    scopus 로고
    • Anaerobic biodegradation of squalene: Using DGGE to monitor the isolation of denitrifying bacteria taken from enrichment cultures
    • Bonin PC, Michotey VD, Mouzdahir A, Rontani J-F. Anaerobic biodegradation of squalene: using DGGE to monitor the isolation of denitrifying bacteria taken from enrichment cultures. FEMS Microbiol Ecol 2002: 42: 37-49.
    • (2002) FEMS Microbiol Ecol , vol.42 , pp. 37-49
    • Bonin, P.C.1    Michotey, V.D.2    Mouzdahir, A.3    Rontani, J.-F.4
  • 6
    • 0030063913 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community
    • Ferris MJ, Muyzer G, Ward DM. Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl Environ Microbiol 1996: 62: 340-346.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 340-346
    • Ferris, M.J.1    Muyzer, G.2    Ward, D.M.3
  • 7
    • 0141448855 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) to the analysis of microbial communities of subgingival plaque
    • Fujimoto C, Maeda H, Kokeguchi S et al. Application of denaturing gradient gel electrophoresis (DGGE) to the analysis of microbial communities of subgingival plaque. J Periodontal Res 2003: 38: 440-445.
    • (2003) J Periodontal Res , vol.38 , pp. 440-445
    • Fujimoto, C.1    Maeda, H.2    Kokeguchi, S.3
  • 9
    • 0032824027 scopus 로고    scopus 로고
    • Assessment of bacterial community structure in soil by polymerase chain reaction and denaturing gradient gel electrophoresis
    • Gelsomino A, Keijzer-Wolters AC, Cacco G, van Elsas JD. Assessment of bacterial community structure in soil by polymerase chain reaction and denaturing gradient gel electrophoresis. J Microbiol Methods 1999: 38: 1-15.
    • (1999) J Microbiol Methods , vol.38 , pp. 1-15
    • Gelsomino, A.1    Keijzer-Wolters, A.C.2    Cacco, G.3    Van Elsas, J.D.4
  • 10
    • 0035203348 scopus 로고    scopus 로고
    • Periodontal disease in pregnancy complicated by type 1 diabetes mellitus
    • Guthmiller JM, Hassebroek-Johnson JR, Weenig DR et al. Periodontal disease in pregnancy complicated by type 1 diabetes mellitus. J Periodontol 2001: 72: 1485-1490.
    • (2001) J Periodontol , vol.72 , pp. 1485-1490
    • Guthmiller, J.M.1    Hassebroek-Johnson, J.R.2    Weenig, D.R.3
  • 11
    • 0035287559 scopus 로고    scopus 로고
    • Periodontal manifestations of systemic disease
    • Kinane D, Marshall G. Periodontal manifestations of systemic disease. Aust Dent J 2001: 46: 2-12.
    • (2001) Aust Dent J , vol.46 , pp. 2-12
    • Kinane, D.1    Marshall, G.2
  • 12
    • 22844433221 scopus 로고    scopus 로고
    • Survey of oral microbial diversity using PCR-based denaturing gradient gel electrophoresis
    • Li Y, Ku CY, Xu J, Saxena D, Caufield PW. Survey of oral microbial diversity using PCR-based denaturing gradient gel electrophoresis. J Dent Res 2005: 84: 559-564.
    • (2005) J Dent Res , vol.84 , pp. 559-564
    • Li, Y.1    Ku, C.Y.2    Xu, J.3    Saxena, D.4    Caufield, P.W.5
  • 14
    • 0034987688 scopus 로고    scopus 로고
    • Molecular ecological analysis of dietary and antibiotic-induced alterations of the mouse intestinal microbiota
    • McCracken VJ, Simpson JM, Mackie RI, Gaskins HR. Molecular ecological analysis of dietary and antibiotic-induced alterations of the mouse intestinal microbiota. J Nutr 2001: 131: 1862-1870.
    • (2001) J Nutr , vol.131 , pp. 1862-1870
    • McCracken, V.J.1    Simpson, J.M.2    Mackie, R.I.3    Gaskins, H.R.4
  • 15
    • 0037224663 scopus 로고    scopus 로고
    • Monitoring the bacterial population dynamics in sourdough fermentation processes by using PCR-denaturing gradient gel electrophoresis
    • Meroth CB, Walter J, Hertel C, Brandt MJ, Hammes WP. Monitoring the bacterial population dynamics in sourdough fermentation processes by using PCR-denaturing gradient gel electrophoresis. Appl Environ Microbiol 2003: 69: 475-482.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 475-482
    • Meroth, C.B.1    Walter, J.2    Hertel, C.3    Brandt, M.J.4    Hammes, W.P.5
  • 16
    • 0021951856 scopus 로고
    • Comparative bacteriology of juvenile periodontitis
    • Moore WE, Holdeman LV, Cato EP et al. Comparative bacteriology of juvenile periodontitis. Infect Immun 1985: 48: 507-519.
    • (1985) Infect Immun , vol.48 , pp. 507-519
    • Moore, W.E.1    Holdeman, L.V.2    Cato, E.P.3
  • 17
    • 0033152336 scopus 로고    scopus 로고
    • DGGE/TGGE a method for identifying genes from natural ecosystems
    • Muyzer G. DGGE/TGGE a method for identifying genes from natural ecosystems. Curr Opin Microbiol 1999: 2: 317-322.
    • (1999) Curr Opin Microbiol , vol.2 , pp. 317-322
    • Muyzer, G.1
  • 18
    • 0031959006 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
    • Muyzer G, Smalla K. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie Van Leeuwenhoek 1998: 73: 127-141.
    • (1998) Antonie Van Leeuwenhoek , vol.73 , pp. 127-141
    • Muyzer, G.1    Smalla, K.2
  • 19
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G, de Waal EC, Uitterlinden AG. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 1993: 59: 695-700.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 20
    • 0029450519 scopus 로고
    • Plaque bacteria counts and vitality during chlorhexidine, meridol and listerine mouth-rinses
    • Netuschil L, Weiger R, Preisler R, Brecx M. Plaque bacteria counts and vitality during chlorhexidine, meridol and listerine mouth-rinses. Eur J Oral Sci 1995: 103: 355-361.
    • (1995) Eur J Oral Sci , vol.103 , pp. 355-361
    • Netuschil, L.1    Weiger, R.2    Preisler, R.3    Brecx, M.4
  • 21
    • 0036242855 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria
    • Nicolaisen MH, Ramsing NB. Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria. J Microbiol Methods 2002: 50: 189-203.
    • (2002) J Microbiol Methods , vol.50 , pp. 189-203
    • Nicolaisen, M.H.1    Ramsing, N.B.2
  • 22
    • 0034554810 scopus 로고    scopus 로고
    • Matching molecular diversity and ecophysiology of benthic cyanobacteria and diatoms in communities along a salinity gradient
    • Nubel U, Garcia-Pichel F, Clavero E, Muyzer G. Matching molecular diversity and ecophysiology of benthic cyanobacteria and diatoms in communities along a salinity gradient. Environ Microbiol 2000: 2: 217-226.
    • (2000) Environ Microbiol , vol.2 , pp. 217-226
    • Nubel, U.1    Garcia-Pichel, F.2    Clavero, E.3    Muyzer, G.4
  • 23
    • 0032112772 scopus 로고    scopus 로고
    • The pathobiology of periodontal diseases may affect systemic diseases: Inversion of a paradigm
    • Page RC. The pathobiology of periodontal diseases may affect systemic diseases: inversion of a paradigm. Ann Periodontol 1998: 3: 108-120.
    • (1998) Ann Periodontol , vol.3 , pp. 108-120
    • Page, R.C.1
  • 24
    • 17244381207 scopus 로고    scopus 로고
    • Normalization of soil DNA extraction for accurate quantification of target genes by real-time PCR and DGGE
    • Park JW, Crowley DE. Normalization of soil DNA extraction for accurate quantification of target genes by real-time PCR and DGGE. Biotechniques 2005: 38: 579-586.
    • (2005) Biotechniques , vol.38 , pp. 579-586
    • Park, J.W.1    Crowley, D.E.2
  • 25
    • 0034992657 scopus 로고    scopus 로고
    • Bacterial diversity in human subgingival plaque
    • Paster BJ, Boches SK, Galvin JL et al. Bacterial diversity in human subgingival plaque. J Bacteriol 2001: 183: 3770-3783.
    • (2001) J Bacteriol , vol.183 , pp. 3770-3783
    • Paster, B.J.1    Boches, S.K.2    Galvin, J.L.3
  • 26
    • 0036943646 scopus 로고    scopus 로고
    • Periodontal infection in cancer patients treated with high-dose chemotherapy
    • Raber-Durlacher JE, Epstein JB, Raber J et al. Periodontal infection in cancer patients treated with high-dose chemotherapy. Support Care Cancer 2002: 10: 466-473.
    • (2002) Support Care Cancer , vol.10 , pp. 466-473
    • Raber-Durlacher, J.E.1    Epstein, J.B.2    Raber, J.3
  • 27
    • 20444490381 scopus 로고    scopus 로고
    • Variation in bacterial DGGE patterns from human saliva: Over time, between individuals and in corresponding dental plaque microcosms
    • Rasiah IA, Wong L, Anderson SA, Sissons CH. Variation in bacterial DGGE patterns from human saliva: over time, between individuals and in corresponding dental plaque microcosms. Arch Oral Biol 2005: 50: 779-787.
    • (2005) Arch Oral Biol , vol.50 , pp. 779-787
    • Rasiah, I.A.1    Wong, L.2    Anderson, S.A.3    Sissons, C.H.4
  • 29
    • 0033278193 scopus 로고    scopus 로고
    • Quantification of bacteria in oral samples by competitive polymerase chain reaction
    • Rupf S, Merte K, Eschrich K. Quantification of bacteria in oral samples by competitive polymerase chain reaction. J Dent Res 1999: 78: 850-856.
    • (1999) J Dent Res , vol.78 , pp. 850-856
    • Rupf, S.1    Merte, K.2    Eschrich, K.3
  • 30
    • 0000023099 scopus 로고
    • Attachment of a 40-base-pair G + Crich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single-base changes
    • U S A
    • Sheffield VC, Cox DR, Lerman LS, Myers RM. Attachment of a 40-base-pair G + Crich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single-base changes. Proc Natl Acad Sci U S A 1989: 86: 232-236.
    • (1989) Proc Natl Acad Sci , vol.86 , pp. 232-236
    • Sheffield, V.C.1    Cox, D.R.2    Lerman, L.S.3    Myers, R.M.4
  • 31
    • 27644464322 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) to the analysis of endodontic infections
    • Siqueira JF, Jr, Rocas IN, Rosado AS. Application of denaturing gradient gel electrophoresis (DGGE) to the analysis of endodontic infections. J Endod 2005: 31: 775-782.
    • (2005) J Endod , vol.31 , pp. 775-782
    • Siqueira Jr., J.F.1    Rocas, I.N.2    Rosado, A.S.3
  • 32
    • 5444258505 scopus 로고    scopus 로고
    • Application of molecular fingerprinting for qualitative assessment of small-intestinal bacterial diversity in dogs
    • Suchodolski JS, Ruaux CG, Steiner JM, Fetz K, Williams DA. Application of molecular fingerprinting for qualitative assessment of small-intestinal bacterial diversity in dogs. J Clin Microbiol 2004: 42: 4702-4708.
    • (2004) J Clin Microbiol , vol.42 , pp. 4702-4708
    • Suchodolski, J.S.1    Ruaux, C.G.2    Steiner, J.M.3    Fetz, K.4    Williams, D.A.5
  • 33
    • 0031737291 scopus 로고    scopus 로고
    • A natural view of microbial biodiversity within hot spring cyanobacterial mat communities
    • Ward DM, Ferris MJ, Nold SC, Bateson MM. A natural view of microbial biodiversity within hot spring cyanobacterial mat communities. Microbiol Mol Biol Rev 1998: 62: 1353-1370.
    • (1998) Microbiol Mol Biol Rev , vol.62 , pp. 1353-1370
    • Ward, D.M.1    Ferris, M.J.2    Nold, S.C.3    Bateson, M.M.4
  • 34
    • 0029004693 scopus 로고
    • Microbiological assessment of an improved stannous fluoride dentifrice
    • Weber DA, Howard-Nordan K, Buckner BA et al. Microbiological assessment of an improved stannous fluoride dentifrice. J Clin Dent 1995: 6: 97-104.
    • (1995) J Clin Dent , vol.6 , pp. 97-104
    • Weber, D.A.1    Howard-Nordan, K.2    Buckner, B.A.3
  • 35
    • 0026952504 scopus 로고
    • Relationship between bacterial counts, microbial vitality and the accumulation of supragingival dental plaque in humans
    • Weiger R, Netuschil L, Brecx M. Relationship between bacterial counts, microbial vitality and the accumulation of supragingival dental plaque in humans. J Periodontal Res 1992: 27: 575-580.
    • (1992) J Periodontal Res , vol.27 , pp. 575-580
    • Weiger, R.1    Netuschil, L.2    Brecx, M.3
  • 36
    • 0029294047 scopus 로고
    • Microbial vitality of supragingival dental plaque during initial stages of experimental gingivitis in humans
    • Weiger R, Netuschil L, von Ohle C, Brecx M. Microbial vitality of supragingival dental plaque during initial stages of experimental gingivitis in humans. J Periodontal Res 1995: 30: 204-209.
    • (1995) J Periodontal Res , vol.30 , pp. 204-209
    • Weiger, R.1    Netuschil, L.2    Von Ohle, C.3    Brecx, M.4
  • 38
    • 0031684010 scopus 로고    scopus 로고
    • Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria
    • Zoetendal EG, Akkermans AD, De Vos WM. Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria. Appl Environ Microbiol 1998: 64: 3854-3859.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3854-3859
    • Zoetendal, E.G.1    Akkermans, A.D.2    De Vos, W.M.3


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