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Volumn 276, Issue 3, 2006, Pages 304-312

Tissue expression map of a large number of expressed sequence tags and its application to in silico screening of stress response genes in common wheat

Author keywords

Common wheat; Global gene expression; Stress response gene; Virtual display

Indexed keywords

ABSCISIC ACID; COMPLEMENTARY DNA;

EID: 33747610716     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-006-0120-1     Document Type: Article
Times cited : (60)

References (45)
  • 1
    • 0035166973 scopus 로고    scopus 로고
    • The InterPro database, an integrated documentation resource for protein families, domains and functional sites
    • Apweiler R et al (2001) The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res 29:37-40
    • (2001) Nucleic Acids Res , vol.29 , pp. 37-40
    • Apweiler, R.1
  • 2
    • 85060774644 scopus 로고    scopus 로고
    • The SWIRM domain: A conserved module found in chromosomal proteins to novel chromatin-modifying activities
    • RESEARCH 0039
    • Arabind L, Iyer LM (2002) The SWIRM domain: a conserved module found in chromosomal proteins to novel chromatin-modifying activities. Genome Biol 3: RESEARCH 0039
    • (2002) Genome Biol , vol.3
    • Arabind, L.1    Iyer, L.M.2
  • 4
    • 20044367629 scopus 로고    scopus 로고
    • REDOX REGULATION: A broadening horizon
    • Buchanan BB, Balmer Y (2005) REDOX REGULATION: a broadening horizon. Ann Rev Plant Biol 56:187-220
    • (2005) Ann Rev Plant Biol , vol.56 , pp. 187-220
    • Buchanan, B.B.1    Balmer, Y.2
  • 5
    • 0036000060 scopus 로고    scopus 로고
    • Molecular and biochemical characterization of a cold-regulated phosphoethanolamine N-methyltransferase from wheat
    • Charron J-BF, Breton G, Danyluk J, Muzac I, Ibrahim RK, Sarhan F (2002) Molecular and biochemical characterization of a cold-regulated phosphoethanolamine N-methyltransferase from wheat. Plant Physiol 129:363-373
    • (2002) Plant Physiol , vol.129 , pp. 363-373
    • Charron, J.-B.F.1    Breton, G.2    Danyluk, J.3    Muzac, I.4    Ibrahim, R.K.5    Sarhan, F.6
  • 6
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • USA
    • Eisen MB, Spellman PT, Brown PO, Botstein D (1998) Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 95:14863-14868
    • (1998) Proc Natl Acad Sci , vol.95 , pp. 14863-14868
    • Eisen, M.B.1    Spellman, P.T.2    Brown, P.O.3    Botstein, D.4
  • 7
    • 0032742129 scopus 로고    scopus 로고
    • Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression
    • Ewing R.M, Kahla AB, Poirot O, Lopez F, Audic S, Claverie JM (1999) Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression. Genome Res 9:950-959
    • (1999) Genome Res , vol.9 , pp. 950-959
    • Ewing, R.M.1    Kahla, A.B.2    Poirot, O.3    Lopez, F.4    Audic, S.5    Claverie, J.M.6
  • 8
    • 19944433661 scopus 로고    scopus 로고
    • Crosstalk and differential response to abiotic and biotic stresses reflected at the transcriptional level of effector genes from secondary metabolism
    • Glombitza S et al (2004) Crosstalk and differential response to abiotic and biotic stresses reflected at the transcriptional level of effector genes from secondary metabolism. Plant Mol Biol 54:817-835
    • (2004) Plant Mol Biol , vol.54 , pp. 817-835
    • Glombitza, S.1
  • 11
    • 0038384497 scopus 로고    scopus 로고
    • Three pathogen-inducible genes encoding lipid transfer protein from pepper are differentially activated by pathogens, abiotic, and environmental stresses
    • Jung HW, Kim W, Hwang BK (2003) Three pathogen-inducible genes encoding lipid transfer protein from pepper are differentially activated by pathogens, abiotic, and environmental stresses. Plant Cell Environ 26:915-928
    • (2003) Plant Cell Environ , vol.26 , pp. 915-928
    • Jung, H.W.1    Kim, W.2    Hwang, B.K.3
  • 12
    • 0027175241 scopus 로고
    • Applications and statistics for multiple high scoring segments in molecular sequences
    • USA
    • Karlin S, Altschul SF (1993) Applications and statistics for multiple high scoring segments in molecular sequences. Proc Natl Acad Sci USA 90:5873-5877
    • (1993) Proc Natl Acad Sci , vol.90 , pp. 5873-5877
    • Karlin, S.1    Altschul, S.F.2
  • 13
    • 0033063862 scopus 로고    scopus 로고
    • Molecular characterization of a gene for alanine aminotransferase from rice (Oryza sativa)
    • Kikuchi H, Hirose S, Toki S, Akama K, Takaiwa F (1999) Molecular characterization of a gene for alanine aminotransferase from rice (Oryza sativa). Plant Mol Biol 39:149-159
    • (1999) Plant Mol Biol , vol.39 , pp. 149-159
    • Kikuchi, H.1    Hirose, S.2    Toki, S.3    Akama, K.4    Takaiwa, F.5
  • 14
    • 0037624063 scopus 로고    scopus 로고
    • Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice
    • Kikuchi S et al. (2003) Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science 301:376-379
    • (2003) Science , vol.301 , pp. 376-379
    • Kikuchi, S.1
  • 15
    • 0142242189 scopus 로고    scopus 로고
    • JUMONJI, a critical factor for cardiac development, functions as a transcriptional repressor
    • Kim TG, Kraus JC, Chen J, Lee Y (2003) JUMONJI, a critical factor for cardiac development, functions as a transcriptional repressor. J Biol Chem 278:42247-42255
    • (2003) J Biol Chem , vol.278 , pp. 42247-42255
    • Kim, T.G.1    Kraus, J.C.2    Chen, J.3    Lee, Y.4
  • 16
    • 0029107143 scopus 로고
    • Fatty acid desaturation during chilling acclimation is one of the factors involved in conferring low-temperature tolerance to young tobacco leaves
    • Kodama H, Horiguchi G, Nishiuchi T, Nishimura M, Iba K (1995) Fatty acid desaturation during chilling acclimation is one of the factors involved in conferring low-temperature tolerance to young tobacco leaves. Plant Physiol 107:1177-1185
    • (1995) Plant Physiol , vol.107 , pp. 1177-1185
    • Kodama, H.1    Horiguchi, G.2    Nishiuchi, T.3    Nishimura, M.4    Iba, K.5
  • 17
    • 0036399722 scopus 로고    scopus 로고
    • A novel plant defensin-like gene of winter wheat is specifically induced during cold acclimation
    • Koike M, Okamoto T, Tsuda S, Imai R (2002) A novel plant defensin-like gene of winter wheat is specifically induced during cold acclimation. Biochem Biophys Res Commun 298:46-53
    • (2002) Biochem Biophys Res Commun , vol.298 , pp. 46-53
    • Koike, M.1    Okamoto, T.2    Tsuda, S.3    Imai, R.4
  • 18
    • 0033082663 scopus 로고    scopus 로고
    • Characterization and functional analysis of Arabidopsis TFIIA reveal that the evolutionally conserved region of the large subunit has a transcription factor domain
    • Li YF, LeGourierrec J, Torki M, Kim YJ, Guerineau F, Zhou DX (1999) Characterization and functional analysis of Arabidopsis TFIIA reveal that the evolutionally conserved region of the large subunit has a transcription factor domain. Plant Mol Biol 39:515-525
    • (1999) Plant Mol Biol , vol.39 , pp. 515-525
    • Li, Y.F.1    LeGourierrec, J.2    Torki, M.3    Kim, Y.J.4    Guerineau, F.5    Zhou, D.X.6
  • 19
    • 14744272333 scopus 로고    scopus 로고
    • The effect of stress on genome regulation and structure
    • Madlung A, Comai L (2004) The effect of stress on genome regulation and structure. Ann Bot 94:481-495
    • (2004) Ann Bot , vol.94 , pp. 481-495
    • Madlung, A.1    Comai, L.2
  • 20
    • 0037179714 scopus 로고    scopus 로고
    • A putative lipid transfer protein involved in systemic resistance in Arabidopsis
    • Maldonado AM, Doerner P, Dixan RA, Lamb CJ, Cameron RK (2002) A putative lipid transfer protein involved in systemic resistance in Arabidopsis. Nature 419:399-403
    • (2002) Nature , vol.419 , pp. 399-403
    • Maldonado, A.M.1    Doerner, P.2    Dixan, R.A.3    Lamb, C.J.4    Cameron, R.K.5
  • 21
    • 13544268738 scopus 로고    scopus 로고
    • A temperature-sensitive mechanism that regulates post-translational stability of a plastidial omega-3 fatty acid desaturase (FAD8) in Arabidopsis leaf tissues
    • Matsuda O, Sakamoto H, Hashimoto T, Iba K (2005) A temperature-sensitive mechanism that regulates post-translational stability of a plastidial omega-3 fatty acid desaturase (FAD8) in Arabidopsis leaf tissues. J Biol Chem 280:3597-3604
    • (2005) J Biol Chem , vol.280 , pp. 3597-3604
    • Matsuda, O.1    Sakamoto, H.2    Hashimoto, T.3    Iba, K.4
  • 22
    • 0346373740 scopus 로고    scopus 로고
    • Discrimination of homoeologous gene expression in hexaploid wheat by SNP analysis of contigs grouped from a large number of expressed sequence tags
    • Mochida K, Yamazaki Y, Ogihara Y (2003) Discrimination of homoeologous gene expression in hexaploid wheat by SNP analysis of contigs grouped from a large number of expressed sequence tags. Mol Gen Genomics 270:371-377
    • (2003) Mol Gen Genomics , vol.270 , pp. 371-377
    • Mochida, K.1    Yamazaki, Y.2    Ogihara, Y.3
  • 23
    • 0036741576 scopus 로고    scopus 로고
    • Silencing of phosphoethanolamine N-methyl transferase results in temperature-sensitive male sterility and salt hypersensitivity in Arabidopsis
    • Mou Z, Wang X, Fu Z, Dai Y, Han C, Ouyang J, Bao F, Hu Y, Li J (2002) Silencing of phosphoethanolamine N-methyl transferase results in temperature-sensitive male sterility and salt hypersensitivity in Arabidopsis. Plant Cell 14:2031-2043
    • (2002) Plant Cell , vol.14 , pp. 2031-2043
    • Mou, Z.1    Wang, X.2    Fu, Z.3    Dai, Y.4    Han, C.5    Ouyang, J.6    Bao, F.7    Hu, Y.8    Li, J.9
  • 24
    • 0031429020 scopus 로고    scopus 로고
    • Wheat MADS box genes, a multigene family dispersed throughout the genome
    • Murai K, Murai R, Ogihara Y (1997) Wheat MADS box genes, a multigene family dispersed throughout the genome. Genes Genet Syst 72:317-321
    • (1997) Genes Genet Syst , vol.72 , pp. 317-321
    • Murai, K.1    Murai, R.2    Ogihara, Y.3
  • 25
    • 16544393288 scopus 로고    scopus 로고
    • Crosstalk in the responses to abiotic and biotic stresses in Arabidopsis: Analysis of gene expression in cytochrome P450 gene superfamily by cDNA microarray
    • Narusaka Y, Narusaka M, Seki M, Umezawa T, Ishida J, Nakajima M, Enju A, Shinozaki K (2004) Crosstalk in the responses to abiotic and biotic stresses in Arabidopsis: analysis of gene expression in cytochrome P450 gene superfamily by cDNA microarray. Plant Mol Biol 55:327-342
    • (2004) Plant Mol Biol , vol.55 , pp. 327-342
    • Narusaka, Y.1    Narusaka, M.2    Seki, M.3    Umezawa, T.4    Ishida, J.5    Nakajima, M.6    Enju, A.7    Shinozaki, K.8
  • 26
    • 0037356771 scopus 로고    scopus 로고
    • Correlated clustering and virtual display of gene expression patterns in the wheat life cycle by large-scale statistical analyses of expressed sequence tags
    • Ogihara Y, Mochida K, Nemoto Y, Murai K, Yamazaki Y, Shin-I T, Kohara Y (2003) Correlated clustering and virtual display of gene expression patterns in the wheat life cycle by large-scale statistical analyses of expressed sequence tags. Plant J 33:1001-1011
    • (2003) Plant J , vol.33 , pp. 1001-1011
    • Ogihara, Y.1    Mochida, K.2    Nemoto, Y.3    Murai, K.4    Yamazaki, Y.5    Shin-I, T.6    Kohara, Y.7
  • 28
    • 0037329132 scopus 로고    scopus 로고
    • Kinetics of transcript and protein accumulation of a low-molecular-weight wheat LEAD-11 dehydrin in response to low temperature
    • Ohno R, Takumi S, Nakamura C (2003) Kinetics of transcript and protein accumulation of a low-molecular-weight wheat LEAD-11 dehydrin in response to low temperature. J Plant Physiol 160:193-200
    • (2003) J Plant Physiol , vol.160 , pp. 193-200
    • Ohno, R.1    Takumi, S.2    Nakamura, C.3
  • 30
    • 9144230726 scopus 로고    scopus 로고
    • Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses
    • Rabbani MA, Maruyama L, Abe H, Khan MA, Katsura K, Ito Y, Yashiwara K, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2003) Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses. Plant Physiol 133:1755-1767
    • (2003) Plant Physiol , vol.133 , pp. 1755-1767
    • Rabbani, M.A.1    Maruyama, L.2    Abe, H.3    Khan, M.A.4    Katsura, K.5    Ito, Y.6    Yashiwara, K.7    Seki, M.8    Shinozaki, K.9    Yamaguchi-Shinozaki, K.10
  • 31
    • 1942501774 scopus 로고    scopus 로고
    • The GATA family of transcription factors in Arabidopsis and rice
    • Reyes JC, Muro-Pastor MI, Florencio FJ (2004) The GATA family of transcription factors in Arabidopsis and rice. Plant Physiol 134:1718-1732
    • (2004) Plant Physiol , vol.134 , pp. 1718-1732
    • Reyes, J.C.1    Muro-Pastor, M.I.2    Florencio, F.J.3
  • 32
    • 11844266632 scopus 로고    scopus 로고
    • Salt-stress enhances xylem development and expression of S-adenosyl-L-methionine synthase identifying tissues of tomato plants
    • Sanchez-Aguay I, Rodriguez-Galan JM, Garcia R, Torreblanca J, Pardo JM (2004) Salt-stress enhances xylem development and expression of S-adenosyl-L-methionine synthase identifying tissues of tomato plants. Planta 220:278-285
    • (2004) Planta , vol.220 , pp. 278-285
    • Sanchez-Aguay, I.1    Rodriguez-Galan, J.M.2    Garcia, R.3    Torreblanca, J.4    Pardo, J.M.5
  • 34
    • 0345531096 scopus 로고    scopus 로고
    • Functional analysis of barley RAC/ROP G-protein family members in susceptibility to the powdery mildew fungus
    • Schultheiss H, Dechert C, Kogel KH, Huclelhoven R (2003) Functional analysis of barley RAC/ROP G-protein family members in susceptibility to the powdery mildew fungus. Plant J 36:589-601
    • (2003) Plant J , vol.36 , pp. 589-601
    • Schultheiss, H.1    Dechert, C.2    Kogel, K.H.3    Huclelhoven, R.4
  • 35
    • 9144255419 scopus 로고    scopus 로고
    • RIKEN Arabidopsis full-length (RAFL) cDNA and its application for expression profiling under abiotic stress conditions
    • Seki M et al (2004) RIKEN Arabidopsis full-length (RAFL) cDNA and its application for expression profiling under abiotic stress conditions. J Exp Bot 55:213-223
    • (2004) J Exp Bot , vol.55 , pp. 213-223
    • Seki, M.1
  • 36
    • 0141725442 scopus 로고    scopus 로고
    • Regulation network of gene expression in the drought and cold stress responses
    • Shinozaki K, Yamaguchi-Shinozaki K, Seki M (2003) Regulation network of gene expression in the drought and cold stress responses. Curr Opin Plant Biol 6:410-417
    • (2003) Curr Opin Plant Biol , vol.6 , pp. 410-417
    • Shinozaki, K.1    Yamaguchi-Shinozaki, K.2    Seki, M.3
  • 37
    • 0036779396 scopus 로고    scopus 로고
    • Transcription factors in plant defense and stress responses
    • Singh K, Foley RC, Onate-Sanchez L (2002) Transcription factors in plant defense and stress responses. Curr Opin Plant Biol 5:430-436
    • (2002) Curr Opin Plant Biol , vol.5 , pp. 430-436
    • Singh, K.1    Foley, R.C.2    Onate-Sanchez, L.3
  • 39
    • 0032781026 scopus 로고    scopus 로고
    • Erwiniacarotovora has two KdgR-like proteins belonging to the IciR family of transcriptional regulators: Identification and characterization of the RexZ activator and the KdgR repressor of pathogenesis
    • Thomson NR, Nasser W, McGowan S, Sebaihia M, Salmond G.P (1999) Erwiniacarotovora has two KdgR-like proteins belonging to the IciR family of transcriptional regulators: identification and characterization of the RexZ activator and the KdgR repressor of pathogenesis. Microbiology 145:1531-1545
    • (1999) Microbiology , vol.145 , pp. 1531-1545
    • Thomson, N.R.1    Nasser, W.2    McGowan, S.3    Sebaihia, M.4    Salmond, G.P.5
  • 40
    • 0033724558 scopus 로고    scopus 로고
    • New members of a cold-responsive group-3 Lea/Rab-related Cor gene family from common wheat
    • Tsuda K, Tsvetanov S, Takumi S, Mori N, Atanassov A, Nakamura C (2000) New members of a cold-responsive group-3 Lea/Rab-related Cor gene family from common wheat. Genes Genet Syst 75:179-188
    • (2000) Genes Genet Syst , vol.75 , pp. 179-188
    • Tsuda, K.1    Tsvetanov, S.2    Takumi, S.3    Mori, N.4    Atanassov, A.5    Nakamura, C.6
  • 41
    • 2442445139 scopus 로고    scopus 로고
    • Role of plant heat-shock proteins and molecular chaperons in the abiotic stress response
    • Wang W, Vinocur B, Shoseyov O, Altman A (2004) Role of plant heat-shock proteins and molecular chaperons in the abiotic stress response. Trends Plant Sci 9:244-252
    • (2004) Trends Plant Sci , vol.9 , pp. 244-252
    • Wang, W.1    Vinocur, B.2    Shoseyov, O.3    Altman, A.4
  • 42
    • 0033974956 scopus 로고    scopus 로고
    • Genome evolution in polyploids
    • Wendel JF (2000) Genome evolution in polyploids. Plant Mol Biol 42:225-249
    • (2000) Plant Mol Biol , vol.42 , pp. 225-249
    • Wendel, J.F.1
  • 44
    • 21244472012 scopus 로고    scopus 로고
    • Molecular dynamics of detoxification and toxin-tolerance genes in brown plant hopper (Nilaparvata lugens Stal., Homoptera: Delphacidae) feeding on resistant rice plants
    • Yang Z, Zhang F, He Q, He G (2005) Molecular dynamics of detoxification and toxin-tolerance genes in brown plant hopper (Nilaparvata lugens Stal., Homoptera: Delphacidae) feeding on resistant rice plants. Arch Insect Biochem Physiol 59:59-66
    • (2005) Arch Insect Biochem Physiol , vol.59 , pp. 59-66
    • Yang, Z.1    Zhang, F.2    He, Q.3    He, G.4


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