Genomic instability in phenotypically normal regenerants of medicinal plant Codonopsis lanceolata Benth. et Hook. f., as revealed by ISSR and RAPD markers

Plant Cell Reports

Volumn 25, Issue 9, 2006, Pages 896-906

  Guo, W L ^a   Gong, L ^a   Ding, Z F ^a   Li, Y D ^a   Li, F X ^a   Zhao, S P ^a   Liu, B ^a  

^a NORTHEAST NORMAL UNIVERSITY   (China)

Author keywords

Codonopsis lanceolata; Genomic instability organogenesis; ISSR; RAPD; Sequence change

Indexed keywords

CODONOPSIS LANCEOLATA; GENOMIC INSTABILITY ORGANOGENESIS; ISSR; RAPD; SEQUENCE CHANGE;

DNA; GENES; HERBICIDES; MEDICINE; SEED;

PLANT CELL CULTURE;

PLANT DNA;

ARTICLE; CLASSIFICATION; CODONOPSIS; GENETIC VARIABILITY; GENETICS; GENOME; GENOMIC INSTABILITY; HISTOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PLANT GENOME; RANDOM AMPLIFIED POLYMORPHIC DNA; TISSUE CULTURE TECHNIQUE;

BASE SEQUENCE; CODONOPSIS; DNA, PLANT; GENETIC VARIATION; GENOME, PLANT; GENOMIC INSTABILITY; MOLECULAR SEQUENCE DATA; PHENOTYPE; PHYLOGENY; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; TISSUE CULTURE TECHNIQUES; VARIATION (GENETICS);

GENES; HERBICIDES; MEDICINE; PLANTS;

CODONOPSIS; CODONOPSIS LANCEOLATA;

EID: 33747398241     PISSN: 07217714     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00299-006-0131-8     Document Type: Article

References (39)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
2. Bertin P, Bouharmont J, Kinet JM (1997) Somaclonal variation and improvement of chilling tolerance in rice: changes in chilling-induced chlorophyll fruorescence. Crop Sci 37:1727-1735
3. Brown PTH, Lange FD, Krang E, Lorz H (1993) Analysis of single protoplasts and regenerated plants by PCR and RAPD technology. Mol Gen Genet 237:311-317
4. Cassells AC, Curry RF (2001) Oxidative stress and physiological, epigenetic and genetic variability in plant tissue culture: implications for micropropagators and genetic engineers. Plant Cell Tissue Organ Cult 64:145-157
5. Diwan N, Cregan PB (1997) Automated sizing of fluorescent labeled simple sequence repeat (SSR) markers to assay genetic variation in soybean. Theory Appl Genet 95:723-733
6. Han EG, Cho SY (1997) Effect of Codonopsis lanceolata water extract on the activities of antionxidative enzymes in carbon tetrachloride treated rats. J Koreon Soc Food Sci Nutr 26:1181-1186
7. Hirochika H (1993) Activation of tobacco retrotransposons during tissue culture. EMBO J 12:2521-2528
8. Hirochika H, Sugimoto K, Otsuki Y, Tsugawa H, Kanda M (1996) Retrotransposons of rice involved in mutations induced by tissue culture. Proc Natl Acad Sci USA 93:7783-7788
9. Hollander M, Wolfe DA (1973) Nonparametric statistical methods, Wiley, New York
10. Hong DY, Lian YS, Shen LD (1984) In: Hong DY (ed) Flora reipublicae popularis sinicae, vol. 73, Science Press, Beijing, pp 37-38
11. Kaeppler SM, Kaeppler HF, Rhee Y (2000) Epigenetic aspects of somaclonal variation in plants. Plant Mol Biol 43:179-188
12. Kidwell KK, Osborn TC (1992) Simple plant DNA isolation procedures. In: Beckman JS, Osborn TC (eds) Plant genomes: methods for genetic and physical mapping, Kluwer Academic Publishers, Amsterdam, pp 1-13
13. Kunkel G (1984) Plants for Human Consumption, Koeltz Scientific Books, Koenigsten, Germany
14. Larkin PJ, Scowcroft WR (1981) Somaclonal variation: a novel source of variability from cell cultures for plant improvement. Theory Appl Genet 60:197-214
15. Li YS, Li HL, An JH, Li LH, Shu YM (2003) Morphology and germination of C. lanceolata. J Agri Sci Yanbian Uni 25:155-158
16. Linacero R, Vazquez AM (1992) Genetic analysis of chlorophyll-deficient somaclonal variants in rye. Genome 35:981-984
17. Müller E, Brown PTH, Hartke S, Lörz H (1990) DNA variation in tissue-culture derived rice plants. Theory Appl Genet 80:673-679
18. Murashige T, Skoog F (1962) A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol Plant 15:473-497
19. Nagaoka T, Ogihara Y (1997) Applicability of inter-simple sequence repeat polymorphisms in wheat for use as DNA markers in comparison to RFLP and RAPD markers. Theory Appl Genet 94:597-602
20. Nayak S, Debata BK, Srivastava VK, Sangwan NS (2003) Evaluation of agronomically useful somaclonal variants in Jamrosa (a hybrid Cymbopogon) and detection of genetic changes through RAPD. Plant Sci 164:1029-1035
21. Peschke VM, Phillips RL, Gengenbach BG (1987) Discovery of transposable element activity among progeny of tissue culture-derived maize plants. Science 238:804-807
22. Phillips RL, Kaeppler SM, Olhoft P (1994) Genetic instability of plant tissue cultures: Breakdown of normal controls. Proc Nati Acad Sci USA 91:5222-5226
23. Piao S (1991) The function and utilization of Korean traditional vegetables. The Encyclopedia Press, Seoul, 56 pp
24. Rahman MH, Rajora OP (2001) Microsatellite DNA somaclonal variation in micropropagated trembling aspen (Populus tremuloides). Plant Cell Rep 20:531-536
25. Rani V, Parida A, Raina SN (1995) Random amplified polymorphic DNA (RAPD) markers for genetic analysis in micropropagated plants of Populus deltoides marsh. Plant Cell Rep 14:459-462
26. Rohlf FJ (1993) NTSYS-pc: numerical taxonomy and multivariate analysis system. Exeter Publishing Ltd., New York, USA
27. Rohlf FJ (1997) NTSYSpc: numerical taxonomy and multivariate analysis system, version 2.02. Exeter Software, Setauket, New York, USA
28. Rout GR, Samantaray S, Das P (2000) In vitro manipulation and propagaton of medicinal plants. Biotech Adv 18:91-120
29. Sato F, Shigematsu Y, Yamada Y (1988) Selection of an atrazine-resistant tobacco cell line having a mutant psbA gene. Mol Gen Genet 214:358-360
30. Shimomura K, Yoshimatsu K, Jaziri M, Ishimaru K (1997) Traditional medicinal plant genetic resources and biotechnology applications. Plant Biotechnology and Plant Genetic resources for Sustainability and Productivity (Series: Biotechnology Intelligence Unit), pp 209-225
31. Sneath PHA, Sokal RR (1973) Numerical taxonomy: the principles and practice of numerical classification. Freeman WH, San Francisco, 573 pp
32. Strand M, Prolia TA, Liskay RM, Petes TD (1993) Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair. Nature 365:274-276
33. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
34. Wang YF, Nie XL, Hu GX (1996) A study on seed germination rate of Codonopsis lanceolata. Chin Wild Plant Resour 1:41-43
35. Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV (1990) DNA polymorphism amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18:6531-6535
36. Xie QJ, Oard JH, Rush MC (1995) Genetic analysis of a purple-red hull rice mutation derived from tissue culture. J Hered 86:154-156
37. Yang W, Oliveira AC, Godwin I, Schertz K, Bennetzen JL (1996) Comparison of DNA marker technologies in characterizing plant genome diversity: variability in Chinese sorghums. Crop Sci 36:1669-1676
38. Zhang JY (1982) The medicinal flora of Changbai Mountains. Jilin Peoples' Press, Changchun, pp 1093-1095
39. Zietkiewicz E, Rafalski A, Labuda D (1994) Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20:176-183