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Volumn 3, Issue 3, 2006, Pages 303-311

Islands of tractability for parsimony haplotyping

Author keywords

Analysis of algorithms and problem complexity; Biology and genetics; Graph algorithms

Indexed keywords

BIOLOGY AND GENETICS; GENOTYPES; GRAPH ALGORITHMS; PARSIMONY HAPLOTYPING;

EID: 33747393333     PISSN: 15455963     EISSN: None     Source Type: Journal    
DOI: 10.1109/TCBB.2006.40     Document Type: Article
Times cited : (21)

References (27)
  • 1
    • 0038219512 scopus 로고    scopus 로고
    • Haplotyping as a perfect phylogeny. A direct approach
    • V. Bafna, D. Gusfield, G. Lancia, and S. Yooseph, "Haplotyping as a Perfect Phylogeny. A Direct Approach," J. Computational Biology, vol. 10, no. 3, pp. 323-340, 2003.
    • (2003) J. Computational Biology , vol.10 , Issue.3 , pp. 323-340
    • Bafna, V.1    Gusfield, D.2    Lancia, G.3    Yooseph, S.4
  • 2
    • 0001294529 scopus 로고    scopus 로고
    • A linear tme algorithm for finding tree-decompositions of small treewidth
    • H.L. Bodlaender, "A Linear Tme Algorithm for Finding Tree-Decompositions of Small Treewidth," SIAM J. Computing, vol. 25, pp. 1305-1317, 1996.
    • (1996) SIAM J. Computing , vol.25 , pp. 1305-1317
    • Bodlaender, H.L.1
  • 3
  • 4
    • 0025269067 scopus 로고
    • Inference of haplotypes from PCR-amplified samples of diploid populations
    • A.G. Clark, "Inference of Haplotypes from PCR-Amplified Samples of Diploid Populations," Molecular Biology and Evolution, vol. 7, no. 2, pp. 111-122, 1990.
    • (1990) Molecular Biology and Evolution , vol.7 , Issue.2 , pp. 111-122
    • Clark, A.G.1
  • 5
    • 0029130796 scopus 로고
    • Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
    • L. Excoffier and M. Slatkin, "Maximum-Likelihood Estimation of Molecular Haplotype Frequencies in a Diploid Population," Molecular Biology and Evolution, vol. 12, no. 5, pp. 921-927, 1995.
    • (1995) Molecular Biology and Evolution , vol.12 , Issue.5 , pp. 921-927
    • Excoffier, L.1    Slatkin, M.2
  • 6
    • 0033794938 scopus 로고    scopus 로고
    • Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data
    • D. Fallin and N.J. Schork, "Accuracy of Haplotype Frequency Estimation for Biallelic Loci, via the Expectation-Maximization Algorithm for Unphased Diploid Genotype Data," Am. J. Human Genetics, vol. 67, no. 4, pp. 947-59, 2000.
    • (2000) Am. J. Human Genetics , vol.67 , Issue.4 , pp. 947-959
    • Fallin, D.1    Schork, N.J.2
  • 8
    • 3142516146 scopus 로고    scopus 로고
    • Model-based inference of haplotype block variation
    • G. Greenspan and D. Geiger, "Model-Based Inference of Haplotype Block Variation," J. Computational Biology, vol. 11, pp. 493-504, 2004.
    • (2004) J. Computational Biology , vol.11 , pp. 493-504
    • Greenspan, G.1    Geiger, D.2
  • 10
    • 0034812677 scopus 로고    scopus 로고
    • Inference of haplotypes from samples of diploid populations: Complexity and algorithms
    • D. Gusfield, "Inference of Haplotypes from Samples of Diploid Populations: Complexity and Algorithms," J. Computational Biology, vol. 8, no. 3, pp. 305-324, 2001.
    • (2001) J. Computational Biology , vol.8 , Issue.3 , pp. 305-324
    • Gusfield, D.1
  • 11
    • 0036374329 scopus 로고    scopus 로고
    • Haplotyping as perfect phylogeny: Conceptual framework and efficient solutions
    • D. Gusfield, "Haplotyping as Perfect Phylogeny: Conceptual Framework and Efficient Solutions (extended abstract)," Proc. Sixth Ann. Int'l Conf. Computational Molecular Biology, pp. 166-175, 2002.
    • (2002) Proc. Sixth Ann. Int'l Conf. Computational Molecular Biology , pp. 166-175
    • Gusfield, D.1
  • 14
    • 4444367508 scopus 로고    scopus 로고
    • Haplotype reconstruction from genotype data using imperfect phylogeny
    • E. Halperin and E. Eskin, "Haplotype Reconstruction from Genotype Data Using Imperfect Phylogeny," Bioinformatics, vol. 20, pp. 1842-1849, 2004.
    • (2004) Bioinformatics , vol.20 , pp. 1842-1849
    • Halperin, E.1    Eskin, E.2
  • 16
    • 0029372419 scopus 로고
    • HAPLO: A program using the em algorithm to estimate the frequencies of multi-site haplotypes
    • M.E. Hawley and K.K. Kidd, "HAPLO: A Program Using the EM Algorithm to Estimate the Frequencies of Multi-Site Haplotypes," J. Heredity, vol. 86, pp. 409-411, 1995.
    • (1995) J. Heredity , vol.86 , pp. 409-411
    • Hawley, M.E.1    Kidd, K.K.2
  • 17
    • 33644502168 scopus 로고    scopus 로고
    • An approximation algorithm for haplotype inference by maximum parsimony
    • Y.-T. Huang, K.-M. Chao, and T. Chen, "An Approximation Algorithm for Haplotype Inference by Maximum Parsimony," Proc. ACM Symp. Applied Computing, pp. 146-150, 2005.
    • (2005) Proc. ACM Symp. Applied Computing , pp. 146-150
    • Huang, Y.-T.1    Chao, K.-M.2    Chen, T.3
  • 19
    • 10044241629 scopus 로고    scopus 로고
    • Haplotyping populations by pure parsimony. complexity, exact and approximation algorithms
    • G. Lancia, M.C. Pinotti, and R. Rizzi, "Haplotyping Populations by Pure Parsimony. Complexity, Exact and Approximation Algorithms," INFORMS J. Computing, vol. 16, pp. 348-359, 2004.
    • (2004) INFORMS J. Computing , vol.16 , pp. 348-359
    • Lancia, G.1    Pinotti, M.C.2    Rizzi, R.3
  • 21
    • 0028913523 scopus 로고
    • An E-M algorithm and testing strategy for multiple-locus haplotypes
    • J.C. Long, R.C. Williams, and M. Urbanek, "An E-M Algorithm and Testing Strategy for Multiple-Locus Haplotypes," Am. J. Human Genetics, vol. 56, no. 2, pp. 799-810, 1995.
    • (1995) Am. J. Human Genetics , vol.56 , Issue.2 , pp. 799-810
    • Long, J.C.1    Williams, R.C.2    Urbanek, M.3
  • 22
    • 0036138183 scopus 로고    scopus 로고
    • Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms
    • T. Niu, Z.S. Qin, X. Xu, and J.S. Liu, "Bayesian Haplotype Inference for Multiple Linked Single-Nucleotide Polymorphisms," Am. J. Human Genetics, vol. 70, pp. 157-169, 2002.
    • (2002) Am. J. Human Genetics , vol.70 , pp. 157-169
    • Niu, T.1    Qin, Z.S.2    Xu, X.3    Liu, J.S.4
  • 23
    • 0035941029 scopus 로고    scopus 로고
    • Blocks of limited haplotype diversity revealed by high resolution scanning of human chromosome 21
    • N. Patil et al., "Blocks of Limited Haplotype Diversity Revealed by High Resolution Scanning of Human Chromosome 21," Science, vol. 294, pp. 1719-1723, 2001.
    • (2001) Science , vol.294 , pp. 1719-1723
    • Patil, N.1
  • 24
    • 0001326115 scopus 로고
    • The hardness of approximations: Gap location
    • E. Petrank, "The Hardness of Approximations: Gap Location," Computational Complexity, vol. 4, pp. 133-157, 1994.
    • (1994) Computational Complexity , vol.4 , pp. 133-157
    • Petrank, E.1
  • 26
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • M. Stephens, N.J. Smith, and P. Donnelly, "A New Statistical Method for Haplotype Reconstruction from Population Data," Am. J. Human Genetics, vol. 68, pp. 978-989, 2001.
    • (2001) Am. J. Human Genetics , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 27
    • 0141617556 scopus 로고    scopus 로고
    • Haplotype inference by maximum parsimony
    • L. Wang and Y. Xu, "Haplotype Inference by Maximum Parsimony," Bioinformatics, vol. 19, pp. 1773-1780, 2003.
    • (2003) Bioinformatics , vol.19 , pp. 1773-1780
    • Wang, L.1    Xu, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.