Studies on cleavage of DNA by N-phosphoryl branched peptides

Peptides

Volumn 27, Issue 6, 2006, Pages 1554-1560

  Feng, Yuping ^a   Cao, Shengli ^b   Xiao, Anshan ^a   Xie, Wenjun ^a   Li, Yanmei ^a   Zhao, Yufen ^a  

^a Tsinghua University   (China)

^b CAPITAL NORMAL UNIVERSITY   (China)

Author keywords

Cleavage; DNA; Hydrolysis; Interaction; N Phosphoryl branched peptide

Indexed keywords

BUFFER; ESTER DERIVATIVE; LIGASE; MAGNESIUM ION; METAL ION; NALPHA,NEPSILON DI[N(O,O DIISOPROPYL)PHOSPHORYLLEUCY]LYSYLMETHYL ESTER; NALPHA,NEPSILON DI[N(O,O DIISOPROPYL)PHOSPHORYLPHENYLALANYL]LYSYLMETHYL ESTER; UNCLASSIFIED DRUG; ZINC ION;

AGAR GEL ELECTROPHORESIS; ARTICLE; CATALYSIS; CHEMICAL STRUCTURE; CIRCULAR DICHROISM; DNA CLEAVAGE; DNA SUPERCOILING; ENZYME MECHANISM; HYDROLYSIS; IONIC STRENGTH; PH; PRIORITY JOURNAL; PROTEIN DNA INTERACTION;

ANIMALS; CATTLE; CIRCULAR DICHROISM; DNA; DNA DAMAGE; DNA LIGASES; ELECTROPHORESIS, AGAR GEL; HYDROGEN-ION CONCENTRATION; IONS; MAGNESIUM; MODELS, CHEMICAL; PEPTIDES; SALTS; ZINC;

EID: 33747260149     PISSN: 01969781     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.peptides.2005.11.020     Document Type: Article

References (23)

1. Becker H.C., and Norden B.J. DNA binding properties of 2,7-diazapyrene and its N-methylated cations studied by linear and circular dichroism spectroscopy and calorimetry. J Am Chem Soc 119 (1997) 5798-5803
2. Bere A., and Helene C. Formation of ternary complexes involving zinc or copper ions, polynucleotides, and polypeptides containing glutamic acid and tyrosine residues. Biopolymers 18 (1979) 2659-2672
3. Bertenshaw S.R., Rogers R.S., Stern M.K., et al. Phosphorus-containing inhibitors of endothelin converting enzyme: effects of the electronic nature of phosphorus on inhibitor potency. J Med Chem 36 1 (1993) 173-176
4. Brack A., and Barbier B. Chemical activity of simple basic peptides. Origins Life 20 (1990) 139-145
5. Brun Fr., Toulme J.J., and Helene C. Interactions of aromatic residues of proteins with nucleic acids. Fluorescence studies of the binding of oligopeptides containing tryptophan and tyrosine residues to polynucleotides. Biochemistry 14 3 (1975) 558-563
6. Calvo-Calle J.M., De Oliveira G.A., et al. Immunogenicity of multiple antigen peptides containing B and non-repeat T cell epitopes of the circums. J Immunol 150 (1993) 1403-1412
7. Cao S.L., Jing Y.Y., Feng Y.P., Niu Y.L., and Zhao Y.F. Synthesis and biological activities of N-phosphoryl branched peptides. Chinese Chem Lett 14 4 (2003) 343-346
8. Chang Z.Z., Tan B., et al. Differentiation of α-COOH from γ-COOH in glutamic acid by N-phosphorylation. J Mol Struct (Theochem) 574 (2001) 163-175
9. Chen Q.X., Lu H.Y., et al. The effects of N-phosphoryloryl amino acid on the activity of Green Crab (Scylla Serrata) alkaline phosphatase. Biochem Mol Biol Int 45 3 (1998) 465-473
10. Chin J. Artificial dinuclear phosphoesterases. Curr Opin Chem Biol 1 (1997) 514-521
11. Cowan J.A. Chemical nucleases. Curr Opin Chem Biol 5 (2001) 634-642
12. Eichhorn G.L. In: Siegel H. (Ed). Metal ions in biological systems vol. 10 (1980), Marcel Dekker, New York 1-21
13. Li Y., Hatfields S., Li L., McMil M.S., Zhao Y.F., and Chen X.Z. Seryl-histidine as an alternative DNA nicking agent in nick translation yields superior DNA probes and hybridizations. Bioorg Med Chem 10 (2002) 667-673
14. Li Y.M., Zhang D.Q., et al. β-Carboxyl catalytic effect of N-C aspartic acid. Bioorg Chem 20 (1992) 285-295
15. Li Y.M., Wang X.H., and Zhao Y.F. Effects of N-phosphorylated amino-acids on membrane N-phospholipid of human erythrocytes. J Biol Phys 19 (1993) 85-94
16. Lipscomb W.N., and Strater N. Recent advances in zinc enzymology. Chem Rev 96 (1996) 2375-2434
17. Li Y.S., Zhao Y.F., Hatfield S., et al. Dipeptide seryl-histidine and related oligopeptides cleave DNA, protein and a carboxyl ester. Bioorg Med Chem 8 (2000) 2675-2680
18. Lokey R.S., Kwok Y., et al. A new class of polyintercalating molecules. J Am Chem Soc 119 (1997) 7202-7210
19. Marzilli L.G., et al. In: Spiro T.G. (Ed). Nucleic-metal ion interaction (1980), Wiley, New York 179-250
20. McMahon E.G., Palomo M.A., and Moore W.M. Phosphoramidon blocks the pressor activity of porcine big endothelin-1-(1-39) in vivo and conversion of big endothelin-1-(1-39) to endothelin-1-(1-21) in vitro. Proc Natl Acad Sci USA 88 (1991) 703-707
21. Patrizia C.B. Cell death in the oligodendrocyte lineage: a molecular perspective of life/death decisions in development and disease. Glia 29 (2000) 124-135
22. Sigel H. Metal ion promoted hydrophobic interactions between nucleotides and amino acids. Mixed-ligand adenosine 5′-triphosphate/metal ion(II)/l-leucinate systems and related ternary complexes. Inorg Chem 22 (1983) 925-934
23. Tam J.P. Synthetic peptide vaccine design: synthesis and properties of a high-density multiple antigenic peptide system. Proc Natl Acad Sci USA 85 (1988) 5409-5413