Effect of sugar-induced senescence on gene expression and implications for the regulation of senescence in Arabidopsis

Planta

Volumn 224, Issue 3, 2006, Pages 556-568

  Pourtau, Nathalie ^a   Jennings, Richard ^a   Pelzer, Elise ^a   Pallas, Jacqueline ^a   Wingler, Astrid ^a  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

Arabidopsis; Glucose signalling; Hexokinase 1; Nitrogen remobilisation; SAG12; Senescence

Indexed keywords

ANION TRANSPORT PROTEIN; ARABIDOPSIS PROTEIN; CARBON; CYSTEINE PROTEINASE; FRUCTOSE; GLUCOSE; GLUTAMATE AMMONIA LIGASE; HEXOKINASE; NITRATE TRANSPORTERS; NITROGEN; PAP1 PROTEIN, ARABIDOPSIS; PAP2 PROTEIN, ARABIDOPSIS; SAG12 PROTEIN, ARABIDOPSIS; TRANSCRIPTION FACTOR;

ARABIDOPSIS; ARTICLE; CLUSTER ANALYSIS; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MUTATION; PHYSIOLOGY; PLANT LEAF; SIGNAL TRANSDUCTION;

ANION TRANSPORT PROTEINS; ARABIDOPSIS; ARABIDOPSIS PROTEINS; CARBON; CLUSTER ANALYSIS; CYSTEINE ENDOPEPTIDASES; FRUCTOSE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GLUCOSE; GLUTAMATE-AMMONIA LIGASE; HEXOKINASE; MUTATION; NITROGEN; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PLANT LEAVES; SIGNAL TRANSDUCTION; TRANSCRIPTION FACTORS;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 33746878243     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-006-0243-y     Document Type: Article

References (59)

1. Al-Shahrour F, Díaz-Uriarte R, Dopazo J (2004) FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. Bioinformatics 20:578-580
2. Balibrea Lara ME, Gonzales Garcia MC, Fatima T, Ehneß R, Lee TK, Proels R, Tanner W, Roitsch T (2004) Extracellular invertase is an essential component of cytokinin-mediated delay of senescence. Plant Cell 16:1276-1287
3. Bernard WR, Matile P (1994) Differential expression of glutamine synthetase genes during the senescence of Arabidopsis thaliana rosette leaves. Plant Sci 98:7-14
4. Borevitz JO, Xia Y, Blount J, Dixon RA, Lamb C (2000) Activation tagging identifies a conserved MYB regulator of phenylpropanoid biosynthesis. Plant Cell 12:2383-2393
5. Boyes DC, Zayed AM, Ascenzi R, McCaskill AJ, Hoffman NE, Davis KR, Görlach J (2001) Growth stage-based phenotypic analysis of Arabidopsis: a model for high throughput functional genomics in plants. Plant Cell 13:1499-1510
6. Brugière N, Dubois F, Masclaux C, Sangwan RS, Hirel B (2000) Immunolocalization of glutamine synthetase in senescing tobacco (Nicotiana tobacum L) leaves suggests that ammonia assimilation is progressively shifted to the mesophyll cytosol. Planta 211:519-527
7. Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver C (2005) Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J 42:567-585
8. Chen ZH, Walker RP, Acheson RM, Técsi LI, Wingler A, Lea PJ, Leegood RC (2000) Are isocitrate lyase and phosphoenolpyruvate carboxykinase involved in gluconeogenesis during senescence of barley leaves and cucumber cotyledons? Plant Cell Physiol 41:960-967
9. Chung BC, Lee SY, Oh SA, Rhew TH, Nam HG, Lee CH (1997) The promoter activity of sen1, a senescence-associated gene of Arabidopsis, is repressed by sugars. J Plant Physiol 151:339-345
10. Dai N, Schaffer A, Petreikov M, Shahak Y, Giller Y, Ratner K, Levine A, Granot D (1999) Overexpression of Arabidopsis hexokinase in tomato plants inhibits growth, reduces photosynthesis, and induces rapid senescence. Plant Cell 11:1253-1266
11. Dekkers BJW, Schuurmans JAMJ, Smkeekens SCM (2004) Glucose delays seed germination in Arabidopsis thaliana. Planta 218:579-588
12. Diaz C, Purdy S, Christ A, Morot-Gaudry J-F, Wingler A, Masclaux-Daubresse C (2005) Characterization of markers to determine the extent and variability of leaf senescence in Arabidopsis thaliana: a metabolic profiling approach. Plant Physiol 138:898-908
13. van Doorn WG (2004) Is petal senescence due to sugar starvation? Plant Physiol 134:35-42
14. Fujiki Y, Yoshikawa Y, Sato T, Inada N, Ito M, Nishida I, Watanabe A (2001) Dark-inducible genes from Arabidopsis thaliana are associated with leaf senescence and repressed by sugars. Physiol Plant 111:345-352
15. Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5:R80
16. Halford NG, Hey S, Jhurreea D, Laurie S, McKibbin RS, Paul M, Zhang Y (2003) Metabolic signalling and carbon partitioning: role of Snf1-related (SnRK1) protein kinase. J Exp Bot 54:467-475
17. Hensel LL, Grbić V, Baumgarten DA, Bleecker AB (1993) Developmental and age-related processes that influence the longevity and senescence of photosynthetic tissues in Arabidopsis. Plant Cell 5:553-564
18. Herrero J, Valencia A, Dopazo J (2001) A hierarchical unsupervised growing neural network for clustering gene expression patterns. Bioinformatics 17:126-136
19. Howitz KT, Bitterman KJ, Cohen HY, Lamming DW, Lavu S, Wood JG, Zipkin RE, Chung P, Kisielewski A, Zhang LL, Scherer B, Sinclair DA (2003) Small molecule activators of sirtuins extend Saccharomyces cerevisiae lifespan. Nature 425:191-196
20. Jang JC, León P, Zhou L, Sheen J (1997) Hexokinase as a sugar sensor in higher plants. Plant Cell 9:5-19
21. Jongebloed U, Szederkényi J, Hartig K, Schobert C, Komor E (2004) Sequence of morphological and physiological events during natural ageing of a castor bean leaf: sieve tube occlusions and carbohydrate back-up precede chlorophyll degradation. Physiol Plant 120:338-346
22. Lee EJ, Koizumi N, Sano H (2004) Identification of genes that are up-regulated in concert during sugar depletion in Arabidopsis. Plant Cell Environ 27:337-345
23. Levey S, Wingler A (2005) Natural variation in the regulation of leaf senescence and relation to other traits in Arabidopsis. Plant Cell Environ 28:223-231
24. Lin SJ, Ford E, Haigis M, Liszt G, Guarente L (2004) Calorie restriction extends yeast life span by lowering the level of NADH. Genes Dev 18:12-16
25. Lloyd JC, Zakhleniuk OV (2004) Responses of primary and secondary metabolism to sugar accumulation revealed by microarray expression analysis of the Arabidopsis mutant, pho3. J Exp Bot 55:1221-1230
26. Logemann J, Schell J, Willmitzer L (1987) Improved method for the isolation of RNA from plant tissues. Anal Biochem 163:16-20
27. Lohman KN, Gan S, John MC, Amasino RM (1994) Molecular analysis of natural leaf senescence in Arabidopsis. Physiol Plant 92:322-328
28. Longo VD, Fabrizio P (2002) Regulation of longevity and stress resistance: a molecular strategy conserved from yeast to humans? Cell Mol Life Sci 59:903-908
29. Masclaux C, Valadier MH, Brugière N, Morot-Gaudry JF, Hirel B (2000) Characterization of the sink/source transition in tobacco (Nicotiana tabacum L) shoots in relation to nitrogen management and leaf senescence. Planta 211:510-518
30. Masclaux-Daubresse C, Valadier MH, Carrayol E, Reisdorf-Cren M, Hirel B (2002) Diurnal changes in the expression of glutamate dehydrogenase and nitrate reductase are involved in the C/N balance of tobacco source leaves. Plant Cell Environ 25:1451-1462
31. Matile P, Schellenberg M, Peisker C (1992) Production and release of a chlorophyll catabolite in isolated senescent chloroplasts. Planta 187:230-235
32. Miller JD, Arteca RN, Pell EJ (1999) Senescence-associated gene expression during ozone-induced leaf senescence in Arabidopsis. Plant Physiol 120:1015-1023
33. Moore B, Zhou L, Rolland F, Hall Q, Cheng WH, Liu YX, Hwang I, Jones T, Sheen J (2003) Role of the Arabidopsis glucose sensor HXK1 in nutrient, light, and hormonal signaling. Science 300:332-336
34. Noh YS, Amasino RM (1999) Identification of a promoter region responsible for the senescence-specific expression of SAG12. Plant Mol Biol 41:181-194
35. Noodén LD, Hillsberg JW, Schneider MJ (1996) Induction of leaf senescence in Arabidopsis thaliana by long days through a light-dosage effect. Physiol Plant 96:491-495
36. Noodén LD, Guiamét JJ, John I (1997) Senescence mechanisms. Physiol Plant 101:746-753
37. Oh SA, Lee SY, Chung IK, Lee CH, Nam HG (1996) A senescence-associated gene of Arabidopsis thaliana is distinctively regulated during natural and artificially induced leaf senescence. Plant Mol Biol 30:739-754
38. Okamoto M (2003) Regulation of NRT1 and NRT2 gene families of Arabidopsis thaliana: responses to nitrate provision. Plant Cell Physiol 44:304-317
39. Orsel M, Eulenburg K, Krapp A, Daniel-Vedele F (2004) Disruption of the nitrate transporter genes AtNRT2.1 and AtNRT2.2 restricts growth at low external nitrate concentration. Planta 219:714-721
40. Paul MJ, Pellny TK (2003) Carbon metabolite feedback regulation of leaf photosynthesis and development. J Exp Bot 54:539-547
41. Pourtau N, Marès M, Purdy S, Quentin N, Ruël A, Wingler A (2004) Interactions of abscisic acid and sugar signalling in the regulation of leaf senescence. Planta 219:765-772
42. Price J, Li T-C, Kang SG, Na JK, Jang JC (2003) Mechanisms of glucose signalling during germination of Arabidopsis. Plant Physiol 132:1424-1438
43. Quirino BF, Reiter WD, Amasino RM (2001) One of two tandem Arabidopsis genes homologous to monosaccharide transporters is senescence-associated. Plant Mol Biol 46:447-457
44. Rolland F, Moore B, Sheen J (2002) Sugar sensing and signaling in plants. Plant Cell 14:S185-S205
45. Rossato L, Lainé P, Ourry A (2001) Nitrogen storage and remobilization in Brassica napus L during the growth cycle: nitrogen fluxes within the plant and changes in soluble protein patterns. J Exp Bot 52:1655-1663
46. Scheible W-R, Morcuende R, Czechowski T, Fritz C, Osuna D, Palacios-Rojas N, Schindelasch D, Thimm O, Udvardi MK, Stitt M (2004) Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiol 136:2483-2499
47. Schmid M, Davison TS, Henz SR, Pape UJ, Demar M, Vingron M, Schölkopf B, Weigel D, Lohmann J (2005) A gene expression map of Arabidopsis thaliana development. Nature Gen 37:501-506
48. Smyth GK (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat Appl Gen Mol Biol 3: No. 1, Article 3
49. Stessman D, Miller A, Spalding M, Rodermel S (2002) Regulation of photosynthesis during Arabidopsis leaf development in continuous light. Photosynth Res 72:27-37
50. Stitt M, Lilley RMC, Gerhardt R, Heldt HW (1989) Metabolite levels in specific cells and subcellular compartments of plant leaves. Methods Enzymol 174:518-552
51. Teng S, Keurentjes J, Bentsink L, Koornneef M, Smeekens S (2005) Sucrose-specific induction of anthocyanin biosynthesis in Arabidopsis requires the MYB75/PAP1 Gene. Plant Physiol 139:1840-1852
52. Tercé-Laforgue T, Mäck G, Hirel B (2004) New insights towards the function of glutamate dehydrogenase revealed during source-sink transition of tobacco (Nicotiana tabacum) plants grown under different nitrogen regimes. Physiol Plant 120:220-228
53. Wanner L, Keller F, Matile P (1991) Metabolism of radiolabelled galactolipids in senescent barley leaves. Plant Sci 78: 199-206
54. Weaver LM, Amasino RM (2001) Senescence is induced in individually darkened Arabidopsis leaves, but inhibited in whole darkened plants. Plant Physiol 127:876-886
55. Weaver LM, Gan S, Quirino B, Amasino RM (1998) A comparison of the expression patterns of several senescence-associated genes in response to stress and hormone treatment. Plant Mol Biol 37:455-469
56. Wingler A, von Schaewen A, Leegood RC, Lea PJ, Quick WP (1998) Regulation of leaf senescence by cytokinin, sugars, and light effects on NADH-dependent hydroxypyruvate reductase. Plant Physiol 116:329-335
57. Wingler A, Marès M, Pourtau N (2004) Spatial patterns and metabolic regulation of photosynthetic parameters during leaf senescence. New Phytol 161:781-789
58. Wingler A, Purdy S, MacLean JA, Pourtau N (2006) The role of sugars in integrating environmental signals during the regulation of leaf senescence. J Exp Bot 57: 391-399
59. Wu Z, Irizarry RA, Gentleman R, Martinez-Murillo F, Spencer F (2004) A model-based background adjustment for oligonucleotide expression arrays. J Am Stat Assoc 99:909-917