Population structure of the Dory snapper, Lutjanus fulviflamma, in the western Indian Ocean revealed by means of AFLP fingerprinting

Hydrobiologia

Volumn 568, Issue 1, 2006, Pages 43-53

  Dorenbosch, M ^a   Pollux, B J A ^a,b   Pustjens, A Z ^a   Rajagopal, S ^a   Nagelkerken, I ^a   Van Der Velde, G ^a   Moon van Der Staay, S Y ^a  

^a RADBOUD UNIVERSITY NIJMEGEN   (Netherlands)

^b NETHERLANDS INSTITUTE OF ECOLOGY NIOO KNAW   (Netherlands)

Author keywords

AFLP; Coral reef fish; Dispersal; Gene flow; Genetic connectivity; Indian Ocean

Indexed keywords

BIODIVERSITY; COASTAL ZONES; MOLECULAR STRUCTURE;

AFLP; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM (AFLP); CORAL REEF FISH; DISPERSAL; GENE FLOW; GENETIC CONNECTIVITY; INDIAN OCEAN;

GENETIC ENGINEERING;

FISH; GENETIC DIFFERENTIATION; GENETIC STRUCTURE; PHYLOGENETICS; POLYMORPHISM; POPULATION STRUCTURE; VARIANCE ANALYSIS;

COMOROS; INDIAN OCEAN; INDIAN OCEAN ISLANDS;

LUTJANUS FULVIFLAMMA;

EID: 33746833194     PISSN: 00188158     EISSN: 15735117     Source Type: Journal    
DOI: 10.1007/s10750-006-0020-8     Document Type: Article

References (54)

1. Bay, L. K., J. H. Choat, L. van Herwerden & D. R. Robertson, 2004. High genetic diversities and complex genetic structure in an Indo-Pacific tropical reef fish (Chlorurus sordidus): evidence of an unstable evolutionary past? Marine Biology 144: 757-767.
2. Beckman Coulter, 2002. CEQ™ 8000 Genetic Analysis System User's Guide. Beckman Coulter Inc., Fullerton, California, USA.
3. Bernardi, G., S. J. Holbrook & R. J. Schmitt, 2001. Gene flow at three spatial scales in a coral reef fish, the three-spot dascyllus, Dascyllus trimaculatus. Marine Biology 138: 457-465.
4. Berry, O., M. D. Tocher & S. D. Sarre, 2004. Can assignment tests measure dispersal? Molecular Ecology 13: 551-561.
5. Brzustowski, J. 2002. Doh assignment test calculator. Available at http://www2.biology.ualberta.ca/jbrzusto/Doh.php.
6. De Bruin, A., B. W. Ibelings & E. van Donk, 2003. Molecular techniques in phytoplankton research: from allozyme electrophoresis to genomics. Hydrobiologia 491: 47-63.
7. De Roos, K., 2003. CEQ™ 8000 AFLP Protocol. Beckman Coulter Netherlands BV, Mijdrecht, The Netherlands.
8. Doherty, P. J., S. Planes & P. Mather, 1995. Gene flow and larval duration in seven species of fish from the Great Barrier reef. Ecology 76: 2373-2391.
9. Excoffier, L., P. E. Smouse & J. M. Quattro, 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
10. Fauvelot, C. & S. Planes, 2002. Understanding origins of present-day genetic structures in marine fish: biologically or historically driven patterns? Marine Biology 141: 773-788.
11. Garcia, A. A. F., L. L. Benchimol, A. M. M. Barbosa, I. O. Geraldi, C. L. Souza & A. P. de Souza, 2004. Comparison of RAPD, RFLP, AFLP and SSR markers for diversity studies in tropical maize inbred lines. Genetics and Molecular Biology 27: 579-588.
12. Geertjes, G. J., J. Postema, A. Kamping, W. van Delden, J. J. Videler & L. van de Zande, 2004. Allozymes and RAPDs detect little genetic population substructuring in the Caribbean stoplight parrotfish Sparisoma viride. Marine Ecology Progress Series 279: 225-235.
13. Gold, J. R. & L. R. Richardson, 1994. Mitochondrial DNA variation among 'red' fishes from the Gulf of Mexico. Fishery Research 20: 137-150.
14. Goudet, J., 1995. FSTAT version 1.2: a computer program to calculate F-statistics. Journal of Heredity 86: 485-486.
15. Huelsenbeck, J. P. & F. Ronquist, 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
16. Jones, G. P., M.J. Milicich, M. J. Emslie & C. Lunow, 1999. Self-recruitment in a coral reef fish population. Nature 402: 802-804.
17. Kingsford, M. J., J. M. Leis, A. Shanks, K. C. Lindeman, S. G. Morgan & J. Pineda, 2002. Sensory environments, larval abilities and local self-recruitment. Bulletin of Marine Science 70: 309-340.
18. Leis, J. M., 2002. Pacific coral-reef fishes: the implications of behaviour and ecology of larvae for biodiversity and conservation, and a reassessment of the open population paradigm. Environmental Biology of Fishes 65: 199-208.
19. Leis, J. M. & B. M. Carson-Ewart, 2000. The Larvae of Indo-Pacific Coastal Fishes. An Identification Guide to Marine Fish Larvae. Fauna Malesiana Handbook 2. Brill, Leiden.
20. Leis, J. M. & D. S. Rennis, 2000. Lutjanidae. In Leis, J. M. & B. M. Carson-Ewart (eds), The Larvae of Indo-Pacific Coastal Fishes. An Identification Guide to Marine Fish Larvae. Fauna Malesiana Handbook 2, Brill, Leiden: 329-337.
21. Manel, S., O. E. Gaggiotti & R. S. Waples, 2005. Assignment methods: matching biological questions with appropriate techniques. Trends in Ecology & Evolution 20: 136-142.
22. McCartney, M. A., J. Acevedo, C. Heredia, C. Rico, B. Quenoville, E. Bermingham & W. O. McMillan, 2003. Genetic mosaic in a marine species flock. Molecular Ecology 12: 2963-2973.
23. McMillen-Jackson, A. L., T. M. Bert, H. Cruz-Lopez, S. Seyoum, T. Orsoy & R. E. Crabtree, 2005. Molecular genetic variation in tarpon (Megalops atlanticus Valenciennes) in the northern Atlantic Ocean. Marine Biology 146: 253-261.
24. Mickett, K., C. Morton, J. Feng, P. Li, M. Simmons, D. Cao, R. A. Dunham & Z. Liu, 2003. Assessing genetic diversity of domestic populations of channel catfish (Ictalurus punctatus) in Alabama using AFLP markers. Aquaculture 228: 91-105.
25. Miller, M. P., 1998. AMOVA-PREP: a program for the preparation of analysis of molecular variance input files from dominant-markers raw data, version 1.01. Available at http://www.marksgeneticsoftware.net/amovaprep.htm.
26. Miller, M. P., 1999. Tools for population genetic analyses (TFPGA): a windows ™ program for the analysis of allozyme and molecular population genetic data. Available at http://www.marksgeneticsoftware.net/_vti_bin/shtml. exe/ tfpga.htm.
27. Mora, C. & P. F. Sale, 2002. Are populations of coral reef fish open or closed? Trends in Ecology & Evolution 17: 422-428.
28. Nei, M. & W. H. Li, 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Science USA 76: 5269-5273.
29. Nzioka, R. M., 1979. Observations on the spawning seasons of East African reef fishes. Journal of Fish Biology 14: 329-342.
30. Paetkau, D., W. Calvert, I. Sterling & C. Strobeck, 1995. Microsatellite analysis of population structure in Canadian polar bears. Molecular Ecology 4: 347-354.
31. Planes, S., R. Galzin & F. Bonhomme, 1996. A genetic metapopulation model for reef fishes in oceanic islands: the case of the surgeonfish, Acanthurus triostegus. Journal of Evolutionay Biology 9: 103-117.
32. Planes, S., 1993. Genetic differentiation in relation to restricted larval dispersal of the convict surgeonfish Acanthurus triostegus in French Polynesia. Marine Ecology Progress Series 98: 237-246.
33. Planes, S., P. Romans & R. Lecomte-Finiger, 1998. Genetic evidence of closed life cycles for some coral reef fishes within Taiaro Lagoon (Tuamotu Archipelago, French Polynesia). Coral Reefs 17: 9-14.
34. Planes, S. & C. Fauvelot, 2002. Isolation by distance and vicariance drive genetic structure of a coral reef fish in the Pacific Ocean. Evolution 56: 378-399.
35. Ramon, M. L., P. S. Lobel & M. D. Sorenson, 2003. Lack of mitochondrial genetic structure in hamlets (Hypoplectrus spp.): recent speciation or ongoing hybridization? Molecular Ecology 12: 2975-2980.
36. Raymond, M. & F. Rousset, 1995. GENEPOP version 1.2: population genetics software for exact tests and ecumenicism. Journal of Heredity 86: 248-249.
37. Richmond, M. D., 2002. A Field Guide to the Seashores of Eastern Africa and the Western Indian Ocean Islands. Sida/ SAREC-UDSM, Dar es Salaam, Tanzania.
38. Rivera, M. A. J., C. D. Kelley & G. K. Roderick, 2004. Subtle population genetic structure in the Hawaiian grouper, Epinephelus quernus (Serranidae) as revealed by mitochondrial DNA analysis. Biological Journal of the Linnean Society 81: 449-468.
39. Rhodes, K. L., R. I. Lewis, R. W. Chapman & Y. Sadovy, 2003. Genetic structure of the camouflage grouper, Ephinephelus polyphekadion (Pisces: Serranidae), in the western central Pacific. Marine Biology 142: 771-776.
40. Roberts, C. M., 1997. Connectivity and management of Caribbean coral reefs. Science 278: 1454-1457.
41. Saitou, N. & M. Nei, 1987. The neighbour-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4: 406-425.
42. Schmitt, R. J. & S. J. Holbrook, 2002. Correlates of spatial variation in settlement of two tropical damselfishes. Marine and Freshwater Research 53: 329-337.
43. Shulman, M. J. & E. Bermingham, 1995. Early life histories, ocean currents, and the population genetics of Caribbean reef fishes. Evolution 49: 897-910.
44. Simpson, S. D., M. G. Meekan, R. D. McCauley & A. Jeffs, 2004. Attraction of settlement-stage coral reef fishes to reef noise. Marine Ecology Progress Series 276: 263-268.
45. Stepien, C. A., J. E. Randall & R. H. Rosenblatt, 1994. Genetic and morphological divergence of a circumtropical complex of goatfishes: Mulloidichthys vanicolensis, M. dentatus, and M. martinicus. Pacific Science 48: 44-56.
46. Swearer, S. E., J. E. Caselle, D. W. Lea & R. R. Warner, 1999. Larval retention and recruitment in an island population of a coral-reef fish. Nature 402: 799-802.
47. Swofford, D. L., 2002. PAUP*: phylogenetic analysis using parsimony (and other methods). Version 4.0 Beta. Sinauer Associates, Sunderland, Massachusetts, USA.
48. Taylor, M. S. & M. E. Hellberg, 2003. Genetic evidence for local retention of pelagic larvae in a Caribbean reef fish. Science 299: 107-109.
49. van Herwerden, L., J. Benzie & C. Davies, 2003. Microsatellite variation and population genetic structure of the red throat emperor on the Great Barrier Reef. Journal of Fish Biology 62: 987-999.
50. Vos, P., R. Hogers, M. Bleeker, et al., 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research 23: 4407-4414.
51. Warner, R. R., 1997. Evolutionary ecology: how to reconcile pelagic dispersal with local adaptation. Coral Reefs 16: S115-S120.
52. Wright, S., 1931. Evolution in Mendelian populations. Genetics 16: 97-159.
53. Yeh, F. C. & T. J. B. Boyle, 1999. POPGENE Version 1.31. Microsoft Window-based Freeware for Population Genetic Analysis. Available at http://www.ualberta.ca/~fyeh/.
54. Zatcoff, M. S., A. O. Ball & G. R. Sedberry, 2004. Population genetic analysis of red grouper, Epinephelus morio, and scamp, Mycteroperca phenax, from the southeastern US Atlantic and Gulf of Mexico. Marine Biology 144: 769-777.