Individual and multi-environment combined analyses identify QTLs for morphogenetic and reproductive development traits in white clover (Trifolium repens L.)

Theoretical and Applied Genetics

Volumn 112, Issue 8, 2006, Pages 1401-1415

  Cogan, N O I ^a   Abberton, M T ^c   Smith, K F ^a,b   Kearney, G ^a,b   Marshall, A H ^c   Williams, A ^c   Michaelson Yeates, T P T ^c   Bowen, C ^c   Jones, E S ^a,d   Vecchies, A C ^a   Forster, J W ^a  

^a LA TROBE UNIVERSITY   (Australia)

^b DEPARTMENT OF PRIMARY INDUSTRIES   (Australia)

^c ABERYSTWYTH UNIVERSITY   (United Kingdom)

^d PIONEER HI BRED INTERNATIONAL INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AGRONOMIC TRAITS; COMBINED ANALYSIS; DATA SETS; GENETIC CONTROL; GENETIC EFFECTS; GENETIC MAP; LEAF AREA; LEGUME SPECIES; MARKER-ASSISTED SELECTION; MOLECULAR GENETICS; PHENOTYPIC ANALYSIS; PHENOTYPIC TRAITS; PLANT BREEDING; PLANT HEIGHT; QTL EFFECTS; QUANTITATIVE TRAIT LOCUS; REPRODUCTIVE DEVELOPMENT; SEED YIELD; WHITE CLOVER;

AGRICULTURE; MORPHOLOGY;

SEED;

TRIFOLIUM REPENS;

ARTICLE; CHROMOSOME MAP; CLOVER; COMPARATIVE STUDY; CROP; ENVIRONMENT; GENE; GENETICS; GENOME; MORPHOGENESIS; PLANT CHROMOSOME; QUANTITATIVE TRAIT LOCUS; REPRODUCTION;

CHROMOSOME MAPPING; CHROMOSOMES, PLANT; CROPS, AGRICULTURAL; ENVIRONMENT; GENES, PLANT; GENOME, PLANT; MORPHOGENESIS; QUANTITATIVE TRAIT LOCI; REPRODUCTION; TRIFOLIUM;

EID: 33746755344     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-006-0241-2     Document Type: Article

References (68)

1. Allard RW (1960) Principles of plant breeding. Wiley, London, p 485
2. Andersen JR, Lübberstedt T (2003) Functional markers in plants. Trends Plant Sci 8:554-560
3. Atwood SS (1940) Genetics of cross-incompatibility among selfincompatible plants of Trifolium repens L. J Am Soc Agron 32:955-968
4. Atwood SS, Hill HD (1940) The regularity of meiosis in microsporocytes of Trifolium repens. Am J Bot 27:730-735
5. Barcikowska B (1976) Studies on some utility features of the crosses Trifolium repens L. Form cultum and relationships between clones and their generative progeny. Genet Pol 17:191-210
6. Barrett B, Griffiths A, Schreiber M, Ellison N, Mercer C, Bouton J, Ong B, Forster J, Sawbridge T, Spangenberg G, Bryan G, Woodfield D (2004) A microsatellite map of white clover (Trifolium repens L.). Theor Appl Genet 109:596-608
7. Barrett B, Baird IJ, Woodfield DR (2005) A QTL analysis of white clover seed production. Crop Sci 45:1844-1850
8. Basten CJ, Weir BS, Zeng Z-B (1994) Zmap-a QTL cartographer. In: Smith C, Gavora JS, Chesnais BBJ, Fairfull W, Gibson JP, Kennedy BW, Burnside EB (eds) Proceedings of the 5th world congress on genetics applied to livestock production: computing strategies and software, vol 22. Guelph, Ontario, Canada, pp 65-66
9. Beavis WD (1994) The power and deceit of QTL experiments: lessons from comparative QTL studies. In: The proceedings of the forty-ninth annual corn and sorghum industry research conference. American Seed Trade Association, Washington, DC, pp 250-266
10. Bert P-F, Jouan I, Tourvieille de Labrouhe D, Serre F, Philippon J, Nicolas P, Vear F (2003) Comparative genetic analysis of quantitative traits in sunflower (Helianthus annus L.). 2. Characterisation of QTL involved in developmental and agronomic traits. Theor Appl Genet 107:181-189
11. Bolanos-Aguilar ED, Huyghe C, Djukic D, Julier B, Ecalle C (2001) Genetic control of alfalfa seed yield and its components. Plant Breed 120:67-72
12. Bolanos-Aguilar ED, Huyghe C, Ecalle C, Hacquet J, Julier B (2002) Effect of cultivar and environment on seed yield in alfalfa. Crop Sci 42:45-50
13. Bonnin I, Prosperi J-M, Oliveri I (1996) Genetic markers and quantitative genetic variation in Medicago truncatula (Leguminosae): a comparative analysis of population structure. Genetics 143:1795-1805
14. Bonnin I, Prosperi J-M, Oliveri I (1997) Comparison of quantitative genetic parameters between two natural populations of a selfing plant species, Medicago truncatula Gaertn
15. Brigham RD, Wilsie CP (1955) Seed setting and vegetative vigour of Ladino clover (Trifolium repens Leyss.) clones and their diallel crosses. Agron J 47:125-127
16. Caradus JR, Chapman DF (1996) Selection for and heritability of stolon characteristics in two cultivars of white clover. Crop Sci 36:900-904
17. Caradus JR, Mackay AC (1991) Performance of white clover cultivars and breeding lines in a mixed species sward. II. Plant characters contributing to differences in clover proportion in swards. NZ J Agr Res 34:155-160
18. Caradus JR, Williams WM (1981) Breeding for improved white clover production in New Zealand hill country. In: Plant physiology and herbage production. Br Grassl Soc Occ Symp No. 13, British Grasslands Society, Nottingham, UK, pp 163-168
19. Caradus JR, Woodfield DR (1990) Estimates of heritability for, and relationships between, root and shoot characters of white clover. 1. Replicated clonal material. Euphytica 46:203-209
20. Choi H-K, Kim D-J, Uhm T, Limpens E, Lim H, Mun J-H, Kalo P, Varma Penmetsa R, Seres A, Kulikova O, Roe BA, Bisseling T, Kiss GB, Cook DR (2004a) A sequence-based genetic map of Medicago truncatula and comparison of marker colinearity with M. sativa. Genetics 166:1463-1502
21. Choi H-K, Mun J-H, Kim D-J, Zhu H, Baek J-M, Mudge J, Roe B, Ellis N, Doyle J, Kiss GB, Young ND, Cook DR (2004b) Estimating genome conservation between crop and model legume species. Proc Natl Acad Sci USA 43:15289-15294
22. Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138:963-971
23. Clements RJ, Hayward MD, Byth DE (1983) Genetic adaptation in pasture plants. In: McIvor JG, Bray RA (eds) Genetic resources of forage plants. CSIRO, Australia, pp 101-106
24. Collins RP, Abberton MT, Michaelson-Yeates TPT, Rhodes I (1997) Response to divergent selection for stolon characters in white clover (Trifolium repens). J Agric Sci 129:279-285
25. Collins RP, Abberton MT, Michaelson-Yeates TPT, Marshall AH, Rhodes I (1998) Effects of divergent selection between morphological traits in white clover (Trifolium repens L.). Euphytica 101: 301-305
26. Collins RP, Helgadottir A, Fothergill M, Rhodes I (2002) Variation amongst survivor populations of white clover collected from sites across Europe: growth attributes and physiological responses to low temperature. Ann Bot 89:283-292
27. Connolly V (1990) Seed yield and yield components in ten white clover cultivars. Irish J Agric Res 29:41-48
28. Crush JR (1987) Nitrogen fixation. In: Williams WM (ed) White clover. CAB International, Wallingford, pp 185-201
29. Cullis BR, Gogel BJ, Morris SG, Verbyla AP, Thompson R (1998) Spatial analysis of multi-environment early generation trials. Biometrics 54:1-18
30. Davies WE (1958) The yields of pure sown plots of eight white clover strains under cutting. J Brit Grassl Soc 13:34-38
31. Doerge RW, Churchill GA (1996) Permutation tests for multiple loci affecting a quantitative character. Genetics 142:285-294
32. Frame J, Charlton JFL, Laidlaw AS, (1998) Temperate forage legumes. CAB International, Wallingford, p 327
33. GENSTAT Committee (2003) GenStat® Release 7.1. VSN International Ltd, Oxon
34. Gibson PB (1957) Effects of flowering on the persistence of white clover. Agron J 49:213-215
35. Grattapaglia D, Bertolucci FL, Sederoff RR (1995) Genetic mapping of QTLs controlling vegetative propagation in Eucalyptus grandis and E. urophylla using a pseudo-testcross strategy and RAPD markers. Theor Appl Genet 90:933-947
36. Haley CS, Knott SA (1992) A simple regression method for mapping quantitative trait loci in line crosses using flanking markers. Heredity 69:315-324
37. Hay MJM, Newton PCD (1996) Effect of severity of defoliation on the viability of reproductive and vegetative axillary buds of Trifolium repens L. Ann Bot 78:117-123
38. Jones ES, Hughes LJ, Drayton MC, Abberton MT, Michaelson-Yeates TPT, Bowen C, Forster JW (2003) An SSR and AFLP molecular marker-based genetic map of white clover (Trifolium repens L.). Plant Sci 165:447-479
39. Juan NA, Sheaffer CC, Barnes DK, Swanson DR, Halgerson JH (1993) Leaf and stem traits and herbage quality of multifoliolate alfalfa. Agron J 85:1121-1127
40. Kajita T, Ohashi H, Tateishi Y, Bailey CD, Doyle JJ (2001) rbcL and legume phylogeny, with particular reference to Phaseoleae, Millettieae, and allies. Syst Biol 26:515-536
41. Kawanabe S, Yoshihara K, Okada T, Ueno M, Hidaka M (1963) Studies on summer depression of pasture crops. 3. Influence of flower bud removal upon vegetative growth of Ladino clover. J Jpn Soc Grass Soc 9:31-41
42. Kearsey MJ, Farquhar AGL (1998) QTL analysis in plants; where are we now? Heredity 80:137-142
43. Kimbeng CA, Bingham ET (1998) Population improvement in lucerne (Medicago sativa L.): components of inbreeding depression are different in original and improved populations. Aust J Exp Agric 38:831-836
44. Lan T-H, Paterson AH (2001) Comparative mapping of QTLs determining the plant size of Brassica oleracea. Theor Appl Genet 103:383-397
45. Lander ES, Botstein D (1989) Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121:185-199
46. Li ZK, Yu SB, Lafitte HR, Huang N, Courtois B, Hittalmani S, Vijayakumar CHM, Liu GF, Wang GC, Shashidhar HE, Zhuang JY, Zheng KL, Singh VP, Sidhu JS, Srivantaneeyakul S, Khush GS (2003) QTL environments in rice. I. Heading date and plant height. Theor Appl Genet 108:141-154
47. Li Y, Sorefan K, Hemmann G, Bevan MW (2004) Arabidopsis NAP and PIR regulate actin-based cell morphogenesis and multiple developmental processes. Plant Physiol 136:3616-3627
48. McCouch SR, Cho YG, Yano M, Paul E, Blinstrub M, (1997) Report on QTL nomenclature. Rice Genet Newsl 14:11-13
49. Michaelson-Yeates TPT, Marshall A, Abberton MT, Rhodes I, (1997) Self-incompatibility and heterosis in white clover (Trifolium repens L.). Euphytica 94:341-348
50. Nyquist WE (1991) Estimation of heritability and prediction of selection response in plant populations. Crit Rev Plant Sci 10:235-322
51. Pedrosa A, Sandal N, Stougaard J, Schweizer D, Bachmair A (2002) Chromosomal map of the model legume Lotus japonicus. Genetics 161:1661-1672
52. Pérez-Pérez JM, Serrano-Cartagena J, Micol JL, (2002) Genetic analysis of natural variations in the architecture of Arabidopsis thaliana vegetative leaves. Genetics 162:893-915
53. Piano E, Annicchiarico P (1995) Persistence of Ladino white clover ecotypes and its relationship with other agronomic traits. Grass Forage Sci 50:195-198
54. Rhodes I, Collins RP, Evans DR (1994) Breeding white clover for tolerance to low temperature and grazing Euphytica 77:239-242
55. Sandal N, Krusell L, Radutoi S, Olbryt M, Pedrosa A, Stracke S, Sato S, Kato T, Tabata S, Parniske M, Bachmair A, Ketelsen T, Stougaard J (2002) A genetic linkage map of the model legume Lotus japonicus and strategies for fast mapping of new loci. Genetics 161:1673-1683
56. Schön CC, Utz HF, Groh S, Truberg B, Openshaw S, Melchinger AE (2004) Quantitative trait locus mapping based on resampling in a vast Maize testcross experiment and its relevance to quantitative genetics for complex traits. Genetics 167:485-498
57. Sebastian RL, Kearsey MJ, King GJ (2002) Identification of quantitative trait loci controlling developmental characteristics of Brassica oleracea L. Theor Appl Genet 104:601-609
58. Ungerer MC, Halldorsdottir SS, Modliszewski JL, Mackay TFC, Purugganan MD (2002) Quantitative trait loci for inflorescence development in Arabidopsis thaliana. Genetics 160:1133-1151
59. Ungerer MC, Halldorsdottir SS, Purugganan MD, Mackay TFC (2003) Genotype-environment interactions at quantitative trait loci affecting inflorescence development in Arabidopsis thaliana. Genetics 165:353-365
60. Van Bogaert G (1977) Factors affecting seed yield in white clover. Euphytica 26:233-239
61. Vandenbosch KA, Stacey G (eds) (2003) Summaries of legume genomics projects from around the globe. Community resources for crops and models. Plant Physiol 131:840-865
62. Via S, Gomulkiewicz R, DeJong G, Scheiner SM, Schlichting CD, Vantienderen PH (1995) Adaptive phenotypic plasticity-consensus and controversy. Trends Ecol Evol 10:212-217
63. Williams WM(1987) Genetics and breeding. In: WilliamsWM(eds) White clover. CAB International, Wallingford, pp 343-419
64. Williams TA, Abberton MT, Thornley WJ, Evans DR, Rhodes I (1998) Evaluation of seed production potential in white clover (Trifolium repens L.) varietal improvement programs. Grass Forage Sci 53:197-207
65. Woodfield DR, Caradus JR, (1990) Estimates of heritability for, and relationships between, root and shoot characteristics of white clover. II. Regression of progeny on mid-parents. Euphytica 46:211-215
66. Woodfield DR, Caradus JR,(1994) Genetic improvement in white clover representing six decades of plant breeding. Crop Sci 34:1205-1213
67. Xu S, (2003) Theoretical basis of the Beavis effect. Genetics 165:2259-2268
68. Zeng Z (1994) Precision mapping of quantitative trait loci. Genetics 136:1457-1468