A PCR-based method to test for the presence or absence of β-conglycinin α′- and α-subunits in soybean

Molecular Breeding

Volumn 17, Issue 4, 2006, Pages 365-374

  Ishikawa, Goro ^a   Takada, Yoshitake ^a   Nakamura, Toshiki ^a  

^a NATIONAL AGRICULTURAL RESEARCH CENTER FOR TOHOKU REGION   (Japan)

Author keywords

Allergen; Glycine max; Polymerase chain reaction; Seed purity test

Indexed keywords

AMINO ACIDS; DNA SEQUENCES; GENE ENCODING; NITROGEN FIXATION;

BASE PAIRS; GENES ENCODING; GLYCINE MAX; INDUCED MUTATIONS; MOLECULAR LEVELS; NATURALLY OCCURRING; SEED PURITIES; SEED PURITY TEST; WILD TYPES; Β-CONGLYCININ;

POLYMERASE CHAIN REACTION;

GLYCINE MAX;

EID: 33746729479     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-006-9010-9     Document Type: Article

References (47)

1. Britt AB (1999) Molecular genetics of DNA repair in higher plants. Trends Plant Sci 4:20-25
2. Bruggemann E, Handwerger K, Essex C, Storz G (1996) Analysis of fast neutron-generated mutants at the Arabidopsis thaliana HY4 locus. Plant J 10:755-760
3. Fukui K, Kojima M, Tachibana N, Kohno M, Takamatsu K, Hirotsuka M, Kito M (2004) Effects of soybean beta-conglycinin on hepatic lipid metabolism and fecal lipid excretion in normal adult rats. Biosci Biotech Biochem 68:1153-1155
4. Fukushima D (1991) Recent progress of soybean protein foods: chemistry, technology, and nutrition. Food Rev Int 7:323-351
5. Gachet E, Martin GG, Vigneau F, Meyer G (1999) Detection of genetically modified organisms (GMOs) by PCR: a brief review of methodologies available. Trends Food Sci Tech 9:380-388
6. Germini A, Zanetti A, Salati C, Rossi S, Forrea C, Schmid S, Marchelli R (2004) Development of a seven-target multiplex PCR for the simultaneous detection of transgenic soybean and maize in feeds and foods. J Agric Food Chem 52:3275-3280
7. Germini A, Rossi S, Zanetti A, Corradini R, Fogher C, Marchelli R (2005) Development of a peptide nucleic acid array platform for the detection of genetically modified organisms in food. J Agric Food Chem 53:3958-3962
8. Gorbunova V, Levy AA (1999) How plants make ends meet: DNA double-strand break repair. Trends Plant Sci 4:263-269
9. Harada JJ, Barker SJ, Goldberg RB (1989) Soybean beta-conglycinin genes are clustered in several DNA regions and are regulated by transcriptional and posttranscriptional processes. Plant Cell 1:415-425
10. Higgins TJV (1984) Synthesis and regulation of major proteins in seeds. Annu Rev Plant Physiol 35:191-221
11. Huang C-C, Pan T-M (2005) Event-specific real-time detection and quantification of genetically modified roundup ready soybean. J Agric Food Chem 53:3833-3839
12. James D, Schmidt A-M, Wall E, Green M, Masri S (2003) Reliable detection and identification of genetically modified maize, soybean, and canola by multiplex PCR analysis. J Agric Food Chem 51:5829-5834
13. Jeong SC, Saghai Maroof MA (2004) Detection and genotyping of SNPs tightly linked to two disease resistance loci, Rsv1 and Rsv3, of soybean. Plant Breed 123:305-310
14. Kitamura K, Kaizuma N (1981) Mutant strains with low levels of subunits of 7S globulin in soybean (Glycine max Merr.) seed. Jpn J Breed 31:353-359
15. Klos KLE, Paz MM, Fredrick Marek L, Cregan PB, Shoemaker RC (2000) Molecular markers useful for detecting resistance to brown stem rot in soybean. Crop Sci 40:1445-1452
16. Kohyama K, Nishinari K (1993) Rheological studies on the gelation process of soybean 7S and 11S proteins in the presence of glucono-σ-lactone. J Agric Food Chem 41:8-14
17. Koshiyama I (1968) Chemical and physical properties of a 7S protein in soybean globulins. Cereal Chem 45:394-404
18. Krishnan HB (2005) Engineering soybean for enhanced sulfur amino acid content. Crop Sci 45:454-461
19. Kunkel TA (1990) Misalignment-mediated DNA synthesis errors. Biochemistry 29:8003-8011
20. Ladin BF, Doyle JJ, Beachy RN (1984) Molecular characterization of a deletion mutation affecting the α′-subunit of β-conglycinin of soybean. J Mol Appl Genet 2:372-380
21. Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head bacteriophage T 4. Nature 227:680-685
22. Lieber MR, Ma Y, Pannicke U, Schwarz K (2003) Mechanism and regulation of human non-homologous DNA endjoining. Nat Rev Mol Cell Biol 4:712-720
23. Mienie CMS, Fourie H, Smit MA, van Staden J, Botha FC (2002) Identification of AFLP markers in soybean linked to resistance to Meloidogyne javanica and conversion to sequence characterized amplified regions (SCARs). Plant Growth Regul 37:157-166
24. Moriyama T, Kishimoto K, Nagai K, Urade R, Ogawa T, Utsumi S, Maruyama N, Maebuchi M (2004) Soybean beta-conglycinin diet suppressed serum triglyceride levels in normal and genetically obese mice by induction of beta-oxidation, downregulation of fatty acid synthase, and inhibition of triglyceride absorption. Biosci Biotechnol Biochem 68:352-359
25. Naito K, Kusaba M, Shikazono N, Takano T, Tanaka A, Tanisaka T, Nishimura M (2005) Transmissible and nontransmissible mutations induced by irradiating Arabidopsis thaliana pollen with c-rays and carbon ions. Genetics 169:881-889
26. Nakazaki T, Okumoto Y, Horibata A, Yamahira S, Teraishi M, Nishida H, Inoue H, Tanisaka T (2003) Mobilization of a transposon in the rice genome. Nature 421:170-172
27. Ogawa T, Tayama E, Kitamura K, Kaizuma N (1989) Genetic improvement of seed storage proteins using three variant alleles of 7S globulin subunits in soybean (Glycine max L.). Jpn J Breed 39:137-147
28. Ogawa T, Bando N, Tsuji H, Nishikawa K, Kitamura K (1995) α-subunit of β-conglycinin, an allergenic protein recognized by IgE antibodies of soybean sensitive patients with atopic dermatitis. Biosci Biotech Biochem 59:831-833
29. Ogawa T, Samoto M, Takahashi K (2000) Soybean allergens and hypoallergenic soybean products. J Nutr Sci Vitaminol 46:271-279
30. Saio K, Kamiya M, Watanabe T (1969) Food processing of soybean 11S and 7S proteins. Part I. Effect of difference of protein components among soybean varieties on formation of tofu-gel. Agric Biol Chem 33:1301-1308
31. Salleh MRBM, Maruyama N, Takahashi K, Yagasaki K, Higasa T, Matsumura Y, Utsumi S (2004) Gelling properties of soybean beta-conglycinin having different subunit compositions. Biosci Biotechnol Biochem 68:1091-1096
32. Samoto M, Fukuda Y, Takahashi K, Tabuchi K, Hiemori M, Tsuji H, Ogawa T, Kawamura Y (1997) Substantially complete removal of three major allergenic soybean proteins (Gly m Bd 30K, Gly m Bd 28K, and the alpha-subunit of conglycinin) from soy protein by using a mutant soybean, Tohoku 124. Biosci Biotech Biochem 61:2148-2150
33. Samoto M, Takahashi K, Fukuda Y, Nakamura S, Kawamura Y (1996) Substantially complete removal of the 34 kDa allergenic soybean protein, Gly m Bd 30K, from soy milk of a mutant lacking with alpha- and alpha′-subunits of conglycinin. Biosci Biotech Biochem 60:1911-1913
34. Shikazono N, Tanaka A, Watanabe H, Tano S (2001) Rearrangements of the DNA in carbon ion-induced mutants of Arabidopsis thaliana. Genetics 157:379-387
35. Shikazono N, Yokota Y, Kitamura S, Suzuki C, Watanabe H, Tano S, Tanaka A (2003) Mutation rate and novel tt mutants of Arabidopsis thaliana induced by carbon ions. Genetics 163:1449-1455
36. Shirley BW, Hanley S, Goodman HM (1992) Effects of ionizing radiation on a plant genome: analysis of two Arabidopsis transparent testa mutations. Plant Cell 4:333-347
37. Takahashi K, Banba H, Kikuchi A, Ito M, Nakamura S (1994) An induced mutant line lacking the α-subunit of β-conglycinin in soybean (Glycine max (L.) Merrill). Breed Sci 44:65-66
38. Takahashi K, Mizuno Y, Yumoto S, Kitamura K, Nakamura S (1996) Inheritance of the α-subunit deficiency of β-conglycinin in soybean (Glycine max (L.) Merrill) line induced by γ-ray irradiation. Breed Sci 46:251-255
39. Takahashi K, Shimada S, Shimada H, Takada Y, Sakai T, Kono Y, Adachi T, Tabuchi K, Kikuchi A, Yumoto S, Nakamura S, Ito M, Banba H, Okabe A (2004) A new soybean cultivar "Yumeminori" with low allergenicity and high content of 11S globulin. Bull Natl Agric Res Cent Tohoku Reg 102:23-39 (in Japanese)
40. Tao Z, Cai X-F, Yang S-L, Gong Y (2001) Detection of exogenous genes in genetically modified plants with multiplex polymerase chain reaction. Plant Mol Biol Rep 19:289-298
41. Thanh VH, Shibasaki K (1976) Heterogenity of β-conglycinin from soybean seeds. Biochim Biophys Acta 439:326-338
42. Thanh VH, Shibasaki K (1978) Major proteins of soybean seeds. Reconstitution of beta-conglycinin from its subunits. J Agric Food Chem 26:695-698
43. Thro AM, Parrott W, Udall JA, Beavis WD (eds) (2004) Symposium, genomics and plant breeding: the experience of the initiative for future agricultural and food systems. Crop Sci 44:1893-1919
44. Yano M, Katayose Y, Ashikari M, Yamanouchi U, Monna L, Fuse T, Baba T, Yamamoto K, Umehara Y, Nagamura Y, Sasaki T (2000) Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. Plant Cell 12:2473-2483
45. Yoshino M, Kanazawa A, Tsutsumi K, Nakamura I, Shimamoto Y (2001) Structure and characterization of the gene encoding alpha subunit of soybean beta-conglycinin. Genes Genet Syst 76:99-105
46. Yoshino M, Kanazawa A, Tsutsumi K, Nakamura I, Takahashi K, Shimamoto Y (2002) Structural variation around the gene encoding the a subunit of soybean β-conglycinin and correlation with the expression of the α subunit. Breed Sci 52:285-292
47. Young VR (1991) Soy protein in relation to human protein and amino acid nutrition. J Am Diet Assoc 91:828-835