메뉴 건너뛰기




Volumn 112, Issue 8, 2006, Pages 1441-1451

Comparison of REML and Gibbs sampling estimates of multi-trait genetic parameters in Scots pine

Author keywords

[No Author keywords available]

Indexed keywords

BRANCH ANGLES; CONFIDENCE INTERVAL; DELTA METHOD; EXPECTED VALUES; GENETIC PARAMETERS; GIBBS SAMPLING; INDIVIDUAL MODELS; INTERVAL ESTIMATE; PINUS SYLVESTRIS; POSTERIOR DISTRIBUTIONS; PROBABILITY DENSITIES; PROGENY TESTS; RESTRICTED MAXIMUM LIKELIHOOD; SCOTS PINE; SIMULATED DATA; SIMULATION STUDIES; VARIANCE COMPONENTS; VARIANCE ESTIMATION;

EID: 33746678634     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-006-0246-x     Document Type: Article
Times cited : (37)

References (45)
  • 1
    • 4043150795 scopus 로고    scopus 로고
    • The interplay of Bayesian and frequentist analysis
    • Bayarri MJ, Berger JO (2004) The interplay of Bayesian and frequentist analysis. Stat Sci 19:58-80
    • (2004) Stat Sci , vol.19 , pp. 58-80
    • Bayarri, M.J.1    Berger, J.O.2
  • 2
    • 1842532350 scopus 로고    scopus 로고
    • The Bayesian revolution in genetics
    • Beaumont MA, Rannala B (2004) The Bayesian revolution in genetics. Nat Rev Genet 5:251-261
    • (2004) Nat Rev Genet , vol.5 , pp. 251-261
    • Beaumont, M.A.1    Rannala, B.2
  • 3
    • 0035433094 scopus 로고    scopus 로고
    • The Bayesian controversy in animal breeding
    • Blasco A (2001) The Bayesian controversy in animal breeding. J Anim Sci 79:2023-2046
    • (2001) J Anim Sci , vol.79 , pp. 2023-2046
    • Blasco, A.1
  • 4
    • 0031805063 scopus 로고    scopus 로고
    • Bayesian inference of genetic parameters and selection response for litter size components in pigs
    • Blasco A, Sorensen D, Bidanel JP (1998) Bayesian inference of genetic parameters and selection response for litter size components in pigs. Genetics 149:301-306
    • (1998) Genetics , vol.149 , pp. 301-306
    • Blasco, A.1    Sorensen, D.2    Bidanel, J.P.3
  • 5
    • 0001773652 scopus 로고
    • The impact of individual tree mixed models (BLUP) in tree breeding strategies
    • In: Potts BM, Borralho NMG, Reid J, Cromer R, Tibbits W, Raymond C (eds), Hobart, Australia, 19-24 February 1995. CRC Temperate Hardwood Forestry, Hobart
    • Borralho NMG (1995) The impact of individual tree mixed models (BLUP) in tree breeding strategies. In: Potts BM, Borralho NMG, Reid J, Cromer R, Tibbits W, Raymond C (eds) Proceedings of the CRC-IUFRO conference on eucalypt plantations: improving fibre yield and quality, Hobart, Australia, 19-24 February 1995. CRC Temperate Hardwood Forestry, Hobart, pp 141-144
    • (1995) Proceedings of the CRC-IUFRO conference on eucalypt plantations: Improving fibre yield and quality , pp. 141-144
    • Borralho, N.M.G.1
  • 6
    • 0032273615 scopus 로고    scopus 로고
    • Alternative methods for monitoring convergence of iterative simulations
    • Brooks SP, Gelman A (1998) Alternative methods for monitoring convergence of iterative simulations. J Comput Graph Stat 7:434-455
    • (1998) J Comput Graph Stat , vol.7 , pp. 434-455
    • Brooks, S.P.1    Gelman, A.2
  • 8
    • 0031455614 scopus 로고    scopus 로고
    • Exact confidence intervals for a variance ratio (or heritability) in a mixed linear model
    • Burch BD, Iyer HK (1997) Exact confidence intervals for a variance ratio (or heritability) in a mixed linear model. Biometrics 53:1318-1333
    • (1997) Biometrics , vol.53 , pp. 1318-1333
    • Burch, B.D.1    Iyer, H.K.2
  • 9
    • 0033245240 scopus 로고    scopus 로고
    • Monte Carlo estimation of Bayesian credible and HPD intervals
    • Chen M-H, Shao Q-M (1999) Monte Carlo estimation of Bayesian credible and HPD intervals. J Comput Graph Stat 8:69-92
    • (1999) J Comput Graph Stat , vol.8 , pp. 69-92
    • Chen, M.-H.1    Shao, Q.-M.2
  • 10
    • 84950453304 scopus 로고
    • Sampling-based approaches to calculating marginal densities
    • Gelfand AE, Smith AFM (1990) Sampling-based approaches to calculating marginal densities. J Am Stat Assoc 85:398-409
    • (1990) J Am Stat Assoc , vol.85 , pp. 398-409
    • Gelfand, A.E.1    Smith, A.F.M.2
  • 13
    • 0021518209 scopus 로고
    • Stochastic relaxation, Gibbs distributions and Bayesian restoration of images
    • Geman S, Geman D (1984) Stochastic relaxation, Gibbs distributions and Bayesian restoration of images. IEEE Trans Pattern Anal Mach Intell 6:721-741
    • (1984) IEEE Trans Pattern Anal Mach Intell , vol.6 , pp. 721-741
    • Geman, S.1    Geman, D.2
  • 14
    • 0029564551 scopus 로고
    • Average information: An efficient algorithm for variance parameter estimation in linear mixed models
    • Gilmour AR, Thompson R, Cullis BR (1995) Average information: an efficient algorithm for variance parameter estimation in linear mixed models. Biometrics 51:1440-1450
    • (1995) Biometrics , vol.51 , pp. 1440-1450
    • Gilmour, A.R.1    Thompson, R.2    Cullis, B.R.3
  • 16
    • 0034928975 scopus 로고    scopus 로고
    • Making decisions about the optimal selection environment using Gibbs sampling
    • Gwaze DP, Woolliams JA (2001) Making decisions about the optimal selection environment using Gibbs sampling. Theor Appl Genet 103:63-69
    • (2001) Theor Appl Genet , vol.103 , pp. 63-69
    • Gwaze, D.P.1    Woolliams, J.A.2
  • 17
    • 0000685177 scopus 로고    scopus 로고
    • Progeny trial estimates of genetic parameters for growth and quality traits in Scots pine
    • Haapanen M, Velling P, Annala M-L (1997) Progeny trial estimates of genetic parameters for growth and quality traits in Scots pine. Silva Fennica 31:3-12
    • (1997) Silva Fennica , vol.31 , pp. 3-12
    • Haapanen, M.1    Velling, P.2    Annala, M.-L.3
  • 18
    • 0022267760 scopus 로고
    • Confidence intervals for a variance ratio, or for heritability, in an unbalanced mixed linear model
    • Harville DA, Fenech AP (1985) Confidence intervals for a variance ratio, or for heritability, in an unbalanced mixed linear model. Biometrics 41:137-152
    • (1985) Biometrics , vol.41 , pp. 137-152
    • Harville, D.A.1    Fenech, A.P.2
  • 19
    • 0000223603 scopus 로고
    • Recent developments in variance and covariance estimation
    • Henderson CR (1986) Recent developments in variance and covariance estimation. J Anim Sci 63:208-216
    • (1986) J Anim Sci , vol.63 , pp. 208-216
    • Henderson, C.R.1
  • 20
    • 0000676751 scopus 로고
    • Multiple trait evaluation using relatives' records
    • Henderson CR, Quaas RL (1976) Multiple trait evaluation using relatives' records. J Anim Sci 43:1188-1197
    • (1976) J Anim Sci , vol.43 , pp. 1188-1197
    • Henderson, C.R.1    Quaas, R.L.2
  • 21
    • 0030464864 scopus 로고    scopus 로고
    • Setting confidence limits to genetic parameters estimated by restricted maximum likelihood analysis of North Carolina design II experiments
    • Hohls T (1996) Setting confidence limits to genetic parameters estimated by restricted maximum likelihood analysis of North Carolina design II experiments. Heredity 77:476-487
    • (1996) Heredity , vol.77 , pp. 476-487
    • Hohls, T.1
  • 22
    • 0028251064 scopus 로고
    • Bayesian inference on variance and covariance components for traits influenced by maternal and direct genetic effects using the Gibbs sampler
    • Jensen J, Wang CS, Sorensen D, Gianola D (1994) Bayesian inference on variance and covariance components for traits influenced by maternal and direct genetic effects using the Gibbs sampler. Acta Agric Scand 44:193-201
    • (1994) Acta Agric Scand , vol.44 , pp. 193-201
    • Jensen, J.1    Wang, C.S.2    Sorensen, D.3    Gianola, D.4
  • 23
    • 0000372330 scopus 로고    scopus 로고
    • Residual maximum likelihood estimation of (co)variance components in multivariate mixed linear models using average information
    • Jensen J, Mäntysaari EA, Madsen P, Thompson R (1996) Residual maximum likelihood estimation of (co)variance components in multivariate mixed linear models using average information. J Indian Soc Agric Stat 49:215-236
    • (1996) J Indian Soc Agric Stat , vol.49 , pp. 215-236
    • Jensen, J.1    Mäntysaari, E.A.2    Madsen, P.3    Thompson, R.4
  • 24
  • 25
    • 1542459750 scopus 로고
    • The advanced theory of statistics
    • 4th edn. Macmillan, New York
    • Kendall M, Stuart A (1977) The advanced theory of statistics, vol 1. Distribution theory, 4th edn. Macmillan, New York
    • (1977) Distribution theory , vol.1
    • Kendall, M.1    Stuart, A.2
  • 26
    • 0035583570 scopus 로고    scopus 로고
    • Comparison of (co)variance component estimates in control populations of red flour beetle (Tribolium castaneum) using restricted maximum likelihood and Gibbs sampling
    • Lin EC, Berger PJ (2001) Comparison of (co)variance component estimates in control populations of red flour beetle (Tribolium castaneum) using restricted maximum likelihood and Gibbs sampling. J Anim Breed Genet 118: 21-36
    • (2001) J Anim Breed Genet , vol.118 , pp. 21-36
    • Lin, E.C.1    Berger, P.J.2
  • 28
    • 0026282694 scopus 로고
    • Estimating variances and covariances for multivariate animal models by restricted maximum likelihood
    • Meyer K (1991) Estimating variances and covariances for multivariate animal models by restricted maximum likelihood. Genet Sel Evol 23:67-83
    • (1991) Genet Sel Evol , vol.23 , pp. 67-83
    • Meyer, K.1
  • 29
    • 0022798997 scopus 로고
    • Sequential estimation of genetic and phenotypic parameters in multitrait mixed model analysis
    • Meyer K, Thompson R (1986) Sequential estimation of genetic and phenotypic parameters in multitrait mixed model analysis. J Dairy Sci 69:2696-2703
    • (1986) J Dairy Sci , vol.69 , pp. 2696-2703
    • Meyer, K.1    Thompson, R.2
  • 30
    • 21144460731 scopus 로고
    • Sparse matrix inversion for restricted maximum likelihood estimation of variance components by expectation maximization
    • Misztal I, Perez-Encisco M (1993) Sparse matrix inversion for restricted maximum likelihood estimation of variance components by expectation maximization. J Dairy Sci 76:1479-1483
    • (1993) J Dairy Sci , vol.76 , pp. 1479-1483
    • Misztal, I.1    Perez-Encisco, M.2
  • 32
    • 77956889208 scopus 로고
    • Recovery of inter-block information when block sizes are unequal
    • Patterson HD, Thompson R (1971) Recovery of inter-block information when block sizes are unequal. Biometrika 58:545-554
    • (1971) Biometrika , vol.58 , pp. 545-554
    • Patterson, H.D.1    Thompson, R.2
  • 33
    • 0036010950 scopus 로고    scopus 로고
    • Comparison between estimation of breeding values and fixed effects using Bayesian and empirical BLUP estimation under selection on parents and missing pedigree information
    • Schenkel FS, Schaeffer LR, Boettcher PJ (2002) Comparison between estimation of breeding values and fixed effects using Bayesian and empirical BLUP estimation under selection on parents and missing pedigree information. Genet Sel Evol 34:41-59
    • (2002) Genet Sel Evol , vol.34 , pp. 41-59
    • Schenkel, F.S.1    Schaeffer, L.R.2    Boettcher, P.J.3
  • 34
    • 0033199777 scopus 로고    scopus 로고
    • Bayesian statistics in genetics: A guide for the uninitiated
    • Shoemaker JS, Painter IS, Weir BS (1999) Bayesian statistics in genetics: a guide for the uninitiated. Trends Genet 15:354-358
    • (1999) Trends Genet , vol.15 , pp. 354-358
    • Shoemaker, J.S.1    Painter, I.S.2    Weir, B.S.3
  • 36
    • 0001527142 scopus 로고
    • Estimation of genetic variances from unselected and selected populations
    • Sorensen DA, Kennedy BW (1984) Estimation of genetic variances from unselected and selected populations. J Anim Sci 59:1213-1233
    • (1984) J Anim Sci , vol.59 , pp. 1213-1233
    • Sorensen, D.A.1    Kennedy, B.W.2
  • 37
    • 0028137540 scopus 로고
    • Bayesian analysis of genetic change due to selection using Gibbs sampling
    • Sorensen DA, Wang CS, Jensen J, Gianola D (1994) Bayesian analysis of genetic change due to selection using Gibbs sampling. Genet Sel Evol 26:333-360
    • (1994) Genet Sel Evol , vol.26 , pp. 333-360
    • Sorensen, D.A.1    Wang, C.S.2    Jensen, J.3    Gianola, D.4
  • 38
    • 0032408386 scopus 로고    scopus 로고
    • An application of Bayesian techniques to the genetic evaluation of growth traits in Eucalyptus globules
    • Soria F, Basurco F, Toval G, Silió L, Rodriguez MC, Toro M (1998) An application of Bayesian techniques to the genetic evaluation of growth traits in Eucalyptus globules. Can J For Res 28:1286-1294
    • (1998) Can J For Res , vol.28 , pp. 1286-1294
    • Soria, F.1    Basurco, F.2    Toval, G.3    Silió, L.4    Rodriguez, M.C.5    Toro, M.6
  • 39
    • 0030279173 scopus 로고    scopus 로고
    • Multiple-trait Gibbs sampler for animal models: Flexible programs for Bayesian and likelihood-based (co)variance component inference
    • van Tassel CP, Van Vleck LD (1996) Multiple-trait Gibbs sampler for animal models: flexible programs for Bayesian and likelihood-based (co)variance component inference. J Anim Sci 74:2586-2597
    • (1996) J Anim Sci , vol.74 , pp. 2586-2597
    • van Tassel, C.P.1    van Vleck, L.D.2
  • 40
    • 21844486485 scopus 로고
    • Effects of selection on estimates of variance components using Gibbs sampling and restricted maximum likelihood
    • van Tassel CP, Casella G, Pollak EJ (1995) Effects of selection on estimates of variance components using Gibbs sampling and restricted maximum likelihood. J Dairy Sci 78:678-692
    • (1995) J Dairy Sci , vol.78 , pp. 678-692
    • van Tassel, C.P.1    Casella, G.2    Pollak, E.J.3
  • 41
    • 20444480694 scopus 로고    scopus 로고
    • Comparing Bayesian estimates of genetic differentiation of molecular markers and quantitative traits: An application to Pinus sylvestris
    • Waldmann P, Garcia-Gil MR, SillanpääMJ (2005) Comparing Bayesian estimates of genetic differentiation of molecular markers and quantitative traits: an application to Pinus sylvestris. Heredity 94:623-629
    • (2005) Heredity , vol.94 , pp. 623-629
    • Waldmann, P.1    Garcia-Gil, M.R.2    Sillanpää, M.J.3
  • 43
    • 0003124559 scopus 로고
    • Marginal inference about variance components in a mixed linear model using Gibbs sampling
    • Wang CS, Rutledge JJ, Gianola D (1993) Marginal inference about variance components in a mixed linear model using Gibbs sampling. Genet Sel Evol 21:41-62
    • (1993) Genet Sel Evol , vol.21 , pp. 41-62
    • Wang, C.S.1    Rutledge, J.J.2    Gianola, D.3
  • 44
    • 27644491981 scopus 로고    scopus 로고
    • Advanced statistical methods for estimating genetic variances in plants
    • Xu S (2003) Advanced statistical methods for estimating genetic variances in plants. Plant Breed Rev 22:113-163
    • (2003) Plant Breed Rev , vol.22 , pp. 113-163
    • Xu, S.1
  • 45
    • 2942661466 scopus 로고    scopus 로고
    • A blocking Gibbs sampling method to detect major genes with phenotypic data from a diallel mating
    • Zeng W, Gosh S, Li B (2004) A blocking Gibbs sampling method to detect major genes with phenotypic data from a diallel mating. Genet Res 83:143-154
    • (2004) Genet Res , vol.83 , pp. 143-154
    • Zeng, W.1    Gosh, S.2    Li, B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.