Fibertract segmentation in position orientation space from high angular resolution diffusion MRI

NeuroImage

Volumn 32, Issue 2, 2006, Pages 665-675

  Hagmann, Patric ^a,b   Jonasson, Lisa ^b   Deffieux, Thomas ^b   Meuli, Reto ^a   Thiran, Jean Philippe ^b   Wedeen, Van J ^c  

^a LAUSANNE UNIVERSITY HOSPITAL   (Switzerland)

^b EPFL   (Switzerland)

^c HARVARD MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CEREBELLUM; NUCLEAR MAGNETIC RESONANCE IMAGING; ORIENTATION; PRIORITY JOURNAL; PYRAMIDAL TRACT;

ALGORITHMS; BRAIN; BRAIN MAPPING; BRAIN STEM; DIFFUSION MAGNETIC RESONANCE IMAGING; DOMINANCE, CEREBRAL; FOURIER ANALYSIS; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; MARKOV CHAINS; MATHEMATICAL COMPUTING; NERVE FIBERS; NEURAL PATHWAYS; SOFTWARE;

EID: 33746609798     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2006.02.043     Document Type: Article

References (45)

1. Basser P.J., Pajevic S., Pierpaoli C., Duda J., and Aldroubi A. In vivo fiber tractography using DT-MRI data. Magn. Reson. Med. 44 4 (2000) 625-632
2. Beaulieu C. The basis of anisotropic water diffusion in the nervous system-A technical review. NMR Biomed. 15 7-8 (2002) 435-455
3. Behrens T.E., Woolrich M.W., Jenkinson M., Johansen-Berg H., Nunes R.G., Clare S., Matthews P.M., Brady J.M., and Smith S.M. Characterization and propagation of uncertainty in diffusion-weighted MR imaging. Magn. Reson. Med. 50 5 (2003) 1077-1088
4. Besag J. On the statistical-analysis of dirty pictures. J. R. Stat. Soc. Ser. B Methodol. 48 3 (1986) 259-302
5. Brémaud P. Markov Chains Gibbs Fields, Monte Carlo Simulation, and Queues (1999), Springer, New York 444 p.
6. Brun A., Knutsson H., Park H., Shenton M., and Westin C. Clustering fiber traces using normalized cuts. Medical Image Computing and Computer-Assisted Intervention-Miccai 2004, Pt. 1, Proceedings vol. 3216 (2004) 368-375
7. Conturo T.E., Lori N.F., Cull T.S., Akbudak E., Snyder A.Z., Shimony J.S., McKinstry R.C., Burton H., and Raichle M.E. Tracking neuronal fiber pathways in the living human brain. Proc. Natl. Acad. Sci. U. S. A. 96 18 (1999) 10422-10427
8. Filippi M., Cercignani M., Inglese M., Horsfield M.A., and Comi G. Diffusion tensor magnetic resonance imaging in multiple sclerosis. Neurology 56 3 (2001) 304-311
9. Geman D. Random-fields and inverse problems in imaging. Lect. Notes Math. 1427 (1990) 113-193
10. Geman S., and Geman D. Stochastic relaxation, Gibbs distributions, and the Bayesian restoration of images. IEEE Trans. Pattern Anal. Mach. Intell. 6 6 (1984) 721-741
11. Hagmann P., Thiran J.P., Jonasson L., Vandergheynst P., Clarke S., Maeder P., and Meuli R. DTI mapping of human brain connectivity: statistical fibre tracking and virtual dissection. NeuroImage 19 3 (2003) 545-554
12. Hagmann P., Reese T., Tseng W., Meuli R., Thiran J., and Wedeen V. Diffusion spectrum imaging tractography in complex cerebral white matter: an investigation of the centrum semiovale. Proc. Int. Soc. Magn. Reson. Med. (2004) 623 Jul.
13. Hagmann P., Cammoun L., Martuzzi R., Maeder P., Clarke S., Thiran J.P., and Meuli R. Hand preference and gender shape the architecture of language networks. Hum. Brain Mapp. (2006 Mar. 15) [Epub ahead of print]
14. Hammersley J., and Clifford P. Markov Fields on Finite Graphs and Lattices (1968) unpublished manuscript
15. Huang H., Zhang J., Jiang H., Wakana S., Poetscher L., Miller M.I., van Zijl P.C., Hillis A.E., Wytik R., and Mori S. DTI tractography based parcellation of white matter: application to the mid-sagittal morphology of corpus callosum. NeuroImage 26 1 (2005) 195-205
16. Huppi P.S., Maier S.E., Peled S., Zientara G.P., Barnes P.D., Jolesz F.A., and Volpe J.J. Microstructural development of human newborn cerebral white matter assessed in vivo by diffusion tensor magnetic resonance imaging. Pediatr. Res. 44 4 (1998) 584-590
17. Jansons K., and Alexander D. Persistent angular structure: new insights from diffusion magnetic resonance imaging data. Inverse Probl. 19 5 (2003) 1031-1046
18. Jansons K., and Alexander D. Persistent angular structure: new insights from diffusion MRI data. Dummy version. Proc.-Inf. Proc. Med. Imaging 2732 (2003) 672-683
19. Jonasson L., Bresson X., Hagmann P., Cuisenaire O., Meuli R., and Thiran J.P. White matter fiber tract segmentation in DT-MRI using geometric flows. Med. Image Anal. 9 3 (2005) 223-236
20. Jonasson L., Hagmann P., Bresson X., Thiran J., and Wedeen V. Representing diffusion MRI in 5D for segmentation of white matter tracts with a level set method. In: Christensen G.E., and Sonka M. (Eds). LNCS (2005), Springer-Verlag, Berlin 311-320
21. Jonasson L., Hagmann P., Thiran J., and Wedeen V. Fiber tracts of high angular resolution diffusion MRI are easily segmented with spectral clustering. Proc. Intl. Soc. Mag. Reson. Med. (2005), Miami Beach 1310 May
22. Jones D.K., Simmons A., Williams S.C., and Horsfield M.A. Non-invasive assessment of axonal fiber connectivity in the human brain via diffusion tensor MRI. Magn. Reson. Med. 42 1 (1999) 37-41
23. Kubicki M., Park H., Westin C.F., Nestor P.G., Mulkern R.V., Maier S.E., Niznikiewicz M., Connor E.E., Levitt J.J., Frumin M., et al. DTI and MTR abnormalities in schizophrenia: analysis of white matter integrity. NeuroImage 26 4 (2005) 1109-1118
24. Lazar M., and Alexander A.L. An error analysis of white matter tractography methods: synthetic diffusion tensor field simulations. NeuroImage 20 2 (2003) 1140-1153
25. Lazar M., Weinstein D.M., Tsuruda J.S., Hasan K.M., Arfanakis K., Meyerand M.E., Badie B., Rowley H.A., Haughton V., Field A., et al. White matter tractography using diffusion tensor deflection. Hum. Brain Mapp. 18 4 (2003) 306-321
26. Lin C.P., Wedeen V.J., Chen J.H., Yao C., and Tseng W.Y. Validation of diffusion spectrum magnetic resonance imaging with manganese-enhanced rat optic tracts and ex vivo phantoms. NeuroImage 19 3 (2003) 482-495
27. Meyer J.W., Makris N., Bates J.F., Caviness V.S., and Kennedy D.N. MRI-Based topographic parcellation of human cerebral white matter. NeuroImage 9 1 (1999) 1-17
28. Mori S., and van Zijl P.C. Fiber tracking: principles and strategies-a technical review. NMR Biomed. 15 7-8 (2002) 468-480
29. Mori S., Crain B.J., Chacko V.P., and van Zijl P.C. Three-dimensional tracking of axonal projections in the brain by magnetic resonance imaging. Ann. Neurol. 45 2 (1999) 265-269
30. Pierpaoli C., Barnett A., Pajevic S., Chen R., Penix L.R., Virta A., and Basser P. Water diffusion changes in Wallerian degeneration and their dependence on white matter architecture. NeuroImage 13 6 Pt. 1 (2001) 1174-1185
31. Poupon C., Mangin J., Clark C.A., Frouin V., Regis J., Le Bihan D., and Bloch I. Towards inference of human brain connectivity from MR diffusion tensor data. Med. Image Anal. 5 1 (2001) 1-15
32. Reese T.G., Heid O., Weisskoff R.M., and Wedeen V.J. Reduction of eddy-current-induced distortion in diffusion MRI using a twice-refocused spin echo. Magn. Reson. Med. 49 1 (2003) 177-182
33. Sochen N., Kimmel R., and Malladi R. A general framework for low level vision. IEEE Trans. Image Process. 7 3 (1998) 310-318
34. Tournier J.D., Calamante F., King M.D., Gadian D.G., and Connelly A. Limitations and requirements of diffusion tensor fiber tracking: an assessment using simulations. Magn. Reson. Med. 47 4 (2002) 701-708
35. Tournier J.D., Calamante F., Gadian D.G., and Connelly A. Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution. NeuroImage 23 3 (2004) 1176-1185
36. Tuch D.S. Q-ball imaging. Magn. Reson. Med. 52 6 (2004) 1358-1372
37. Tuch D.S., Reese T.G., Wiegell M.R., Makris N., Belliveau J.W., and Wedeen V.J. High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity. Magn. Reson. Med. 48 4 (2002) 577-582
38. Tuch D.S., Reese T.G., Wiegell M.R., and Wedeen V.J. Diffusion MRI of complex neural architecture. Neuron 40 5 (2003) 885-895
39. Wedeen V. Diffusion Aniostropy and White Matter Tracts (1996) June 17-21, ISMRM Boston, MA, USA
40. Wedeen V., Reese T., Tuch D., Weigel M., Dou J., Weiskoff R., and Chessler D. Mapping Fiber Orientation Spectra in Cerebral White Matter with Fourier-Transform Diffusion MR (2000) 82 Denver
41. Wedeen V.J., Hagmann P., Tseng W.Y., Reese T.G., and Weisskoff R.M. Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging. Magn. Reson. Med. 54 6 (2005) 1377-1386
42. Wiegell M.R., Larsson H.B., and Wedeen V.J. Fiber crossing in human brain depicted with diffusion tensor MR imaging. Radiology 217 3 (2000) 897-903
43. Zhan W., Stein E.A., and Yang Y. Mapping the orientation of intravoxel crossing fibers based on the phase information of diffusion circular spectrum. NeuroImage 23 4 (2004) 1358-1369
44. Zhang Y., Brady M., and Smith S. Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm. IEEE Trans. Med. Imaging 20 1 (2001) 45-57
45. Zhukov L., Museth K., Breen D., Barr A., and Whitaker R. Level set modeling and segmentation of diffusion tensor magnetic resonance imaging brain data. J. Electron. Imaging 12 1 (2003) 125-1133