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Volumn 56, Issue 1, 2006, Pages 35-45

pIT3, a cryptic plasmid isolated from the hyperthermophilic crenarchaeon Sulfolobus solfataricus IT3

Author keywords

Genetic element; Plasmid; Sequence and functional analysis; Sulfolobus; Transcriptional analysis; Transformation

Indexed keywords

BACTERIAL PROTEIN; DNA POLYMERASE; DNA PRIMASE; HELICASE; PRIMER DNA; VIRUS ENZYME; RIBOSOME DNA;

EID: 33746557354     PISSN: 0147619X     EISSN: 10959890     Source Type: Journal    
DOI: 10.1016/j.plasmid.2006.02.002     Document Type: Article
Times cited : (17)

References (45)
  • 1
    • 10644271631 scopus 로고    scopus 로고
    • Archaeal genetics-the third way
    • Allers T., and Mevarech M. Archaeal genetics-the third way. Nat. Genet. 6 (2005) 58-73
    • (2005) Nat. Genet. , vol.6 , pp. 58-73
    • Allers, T.1    Mevarech, M.2
  • 4
    • 0037494948 scopus 로고    scopus 로고
    • Characterization and functional complementation of a nonlethal deletion in the chromosome of a β-glycosidase mutant of Sulfolobus solfataricus
    • Bartolucci S., Rossi M., and Cannio R. Characterization and functional complementation of a nonlethal deletion in the chromosome of a β-glycosidase mutant of Sulfolobus solfataricus. J. Bacteriol. 185 (2003) 3948-3957
    • (2003) J. Bacteriol. , vol.185 , pp. 3948-3957
    • Bartolucci, S.1    Rossi, M.2    Cannio, R.3
  • 6
    • 0021770951 scopus 로고
    • Characterization of a halobacterial gene affecting bacterio-opsin gene expression
    • Beltach M., Friedman J., Boyer H.W., and Pfeifer F. Characterization of a halobacterial gene affecting bacterio-opsin gene expression. Nucleic Acids Res. 12 (1984) 7949-7959
    • (1984) Nucleic Acids Res. , vol.12 , pp. 7949-7959
    • Beltach, M.1    Friedman, J.2    Boyer, H.W.3    Pfeifer, F.4
  • 7
    • 0018800089 scopus 로고
    • A rapid alkaline extraction procedure for screening recombinant plasmid DNA
    • Birnboim H.C., and Doly J. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7 (1979) 1513-1523
    • (1979) Nucleic Acids Res. , vol.7 , pp. 1513-1523
    • Birnboim, H.C.1    Doly, J.2
  • 8
    • 0031747102 scopus 로고    scopus 로고
    • An autonomously replicating transforming vector for Sulfolobus solfataricus
    • Cannio R., Contursi P., Rossi M., and Bartolucci S. An autonomously replicating transforming vector for Sulfolobus solfataricus. J. Bacteriol. 180 (1998) 3237-3240
    • (1998) J. Bacteriol. , vol.180 , pp. 3237-3240
    • Cannio, R.1    Contursi, P.2    Rossi, M.3    Bartolucci, S.4
  • 10
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet F. Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res. 16 (1988) 10881-10890
    • (1988) Nucleic Acids Res. , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 11
    • 0026502191 scopus 로고
    • The copy number of plasmid pLS1 is regulated by two trans-acting plasmid products: the antisense RNA II and the repressor protein, RepA
    • del Solar G., and Espinosa M. The copy number of plasmid pLS1 is regulated by two trans-acting plasmid products: the antisense RNA II and the repressor protein, RepA. Mol. Microbiol. 6 (1992) 83-94
    • (1992) Mol. Microbiol. , vol.6 , pp. 83-94
    • del Solar, G.1    Espinosa, M.2
  • 12
    • 0033859844 scopus 로고    scopus 로고
    • Plamid copy number control: an ever-growing story
    • del Solar G., and Espinosa M. Plamid copy number control: an ever-growing story. Mol. Microbiol. 37 (2000) 492-500
    • (2000) Mol. Microbiol. , vol.37 , pp. 492-500
    • del Solar, G.1    Espinosa, M.2
  • 13
    • 0029873327 scopus 로고    scopus 로고
    • 16S rDNA-based phylogeny of the archaeal order Sulfolobales and reclassification of Desulforolobus ambivalens as Acidianus ambivalens comb. nov
    • Fuchs T., Huber H., Burggraf S., and Stetter K.O. 16S rDNA-based phylogeny of the archaeal order Sulfolobales and reclassification of Desulforolobus ambivalens as Acidianus ambivalens comb. nov. Syst. Appl. Microbiol. 19 (1996) 56-60
    • (1996) Syst. Appl. Microbiol. , vol.19 , pp. 56-60
    • Fuchs, T.1    Huber, H.2    Burggraf, S.3    Stetter, K.O.4
  • 14
    • 0025261685 scopus 로고
    • A new superfamily of putative NTP-binding domains encoded by genomes of small DNA and RNA viruses
    • Gorbalenya A.E., Koonin E.V., and Wolf Y.I. A new superfamily of putative NTP-binding domains encoded by genomes of small DNA and RNA viruses. FEBS Lett. 262 (1990) 145-148
    • (1990) FEBS Lett. , vol.262 , pp. 145-148
    • Gorbalenya, A.E.1    Koonin, E.V.2    Wolf, Y.I.3
  • 15
    • 8744225606 scopus 로고    scopus 로고
    • Genomic comparison of archaeal conjugative plasmids from Sulfolobus
    • Greve B., Jensen S., Brugger K., Zillig W., and Garrett R.A. Genomic comparison of archaeal conjugative plasmids from Sulfolobus. Archaea 1 (2004) 231-239
    • (2004) Archaea , vol.1 , pp. 231-239
    • Greve, B.1    Jensen, S.2    Brugger, K.3    Zillig, W.4    Garrett, R.A.5
  • 16
    • 20144366619 scopus 로고    scopus 로고
    • Novel RepA-MCM proteins encoded in plasmids pTAU4, pORA1, and pTIK4 from Sulfolobus neozealandicus
    • Greve B., Jensen S., Phan H., Brugger K., Zillig W., She Q., and Garrett R.A. Novel RepA-MCM proteins encoded in plasmids pTAU4, pORA1, and pTIK4 from Sulfolobus neozealandicus. Archaea 1 (2004) 319-325
    • (2004) Archaea , vol.1 , pp. 319-325
    • Greve, B.1    Jensen, S.2    Phan, H.3    Brugger, K.4    Zillig, W.5    She, Q.6    Garrett, R.A.7
  • 17
    • 0024351039 scopus 로고
    • Phenotypic characterisation of the archaeabacterial genus Sulfolobus: comparison of five wild-type strains
    • Grogan D.W. Phenotypic characterisation of the archaeabacterial genus Sulfolobus: comparison of five wild-type strains. J. Bacteriol. 171 (1989) 6710-6719
    • (1989) J. Bacteriol. , vol.171 , pp. 6710-6719
    • Grogan, D.W.1
  • 18
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from proteins blocks
    • Henikoff S., and Henikoff J.G. Amino acid substitution matrices from proteins blocks. Proc. Natl. Acad. Sci. USA 89 (1992) 10915-10919
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.G.2
  • 19
    • 0026704305 scopus 로고
    • Organization and evolution of bacterial and bacteriophage primase-helicase systems
    • Ilyina T.V., Gorbalenya A.E., and Koonin E.V. Organization and evolution of bacterial and bacteriophage primase-helicase systems. J. Mol. Evol. 34 (1992) 351-357
    • (1992) J. Mol. Evol. , vol.34 , pp. 351-357
    • Ilyina, T.V.1    Gorbalenya, A.E.2    Koonin, E.V.3
  • 20
    • 0003123750 scopus 로고
    • Eubacterial, archaebacterial, and eucariotic genes that encode leaderless mRNA
    • Baltz R.H., Hegeman G.D., and Skatrud P.L. (Eds), American Society for Microbiology, Washington, DC
    • Janssen G.R. Eubacterial, archaebacterial, and eucariotic genes that encode leaderless mRNA. In: Baltz R.H., Hegeman G.D., and Skatrud P.L. (Eds). Industrial Microrganisms: Basic and Applied Molecular Genetics (1993), American Society for Microbiology, Washington, DC
    • (1993) Industrial Microrganisms: Basic and Applied Molecular Genetics
    • Janssen, G.R.1
  • 22
    • 0032211967 scopus 로고    scopus 로고
    • Sulfolobus islandicus plasmids pRN1 and pRN2 share distant but common evolutionary ancestry
    • Keeling P.J., Klenk H.-P., Singh R.K., Schenk M.E., Sensen C.W., and Zillig W. Sulfolobus islandicus plasmids pRN1 and pRN2 share distant but common evolutionary ancestry. Extremophiles 2 (1998) 391-393
    • (1998) Extremophiles , vol.2 , pp. 391-393
    • Keeling, P.J.1    Klenk, H.-P.2    Singh, R.K.3    Schenk, M.E.4    Sensen, C.W.5    Zillig, W.6
  • 23
    • 0027181280 scopus 로고
    • Nucleotide sequence, transcription, and phylogeny of the gene encoding the superoxide dismutase of Sulfolobus acidocaldarius
    • Klenk H.-P., Schleper C., Schwass V., and Zillig W. Nucleotide sequence, transcription, and phylogeny of the gene encoding the superoxide dismutase of Sulfolobus acidocaldarius. Biochim. Biophys. Acta 1174 (1993) 95-98
    • (1993) Biochim. Biophys. Acta , vol.1174 , pp. 95-98
    • Klenk, H.-P.1    Schleper, C.2    Schwass, V.3    Zillig, W.4
  • 24
    • 0345151827 scopus 로고    scopus 로고
    • Molecular analysis of pDL10 from Acidianus ambivalens reveals a family of related plasmids from extremely thermophilic and acidophilic archaea
    • Kletzin A., Lieke A., Urich T., Charlebois R.L., and Sensen C.W. Molecular analysis of pDL10 from Acidianus ambivalens reveals a family of related plasmids from extremely thermophilic and acidophilic archaea. Genetics 152 (1999) 1307-1314
    • (1999) Genetics , vol.152 , pp. 1307-1314
    • Kletzin, A.1    Lieke, A.2    Urich, T.3    Charlebois, R.L.4    Sensen, C.W.5
  • 25
    • 0028070460 scopus 로고
    • Regulation of plasmid pE194 replication: control of cop-repF operon transcription by Cop and of repF translation by countertranscript RNA
    • Kwak J.H., and Weisblum B. Regulation of plasmid pE194 replication: control of cop-repF operon transcription by Cop and of repF translation by countertranscript RNA. J. Bacteriol. 176 (1994) 5044-5051
    • (1994) J. Bacteriol. , vol.176 , pp. 5044-5051
    • Kwak, J.H.1    Weisblum, B.2
  • 26
    • 0035865841 scopus 로고    scopus 로고
    • Thermostable and site-specific DNA binding of the gene product ORF56 from the Sulfolobus islandicus plasmid pRN1, a putative archaeal plasmid copy control protein
    • Lipps G., Stegert M., and Krauss G.A. Thermostable and site-specific DNA binding of the gene product ORF56 from the Sulfolobus islandicus plasmid pRN1, a putative archaeal plasmid copy control protein. Nucleic Acids Res. 29 (2001) 904-913
    • (2001) Nucleic Acids Res. , vol.29 , pp. 904-913
    • Lipps, G.1    Stegert, M.2    Krauss, G.A.3
  • 27
    • 0035945233 scopus 로고    scopus 로고
    • The protein ORF80 from the acidophilic and thermophilic archaeon Sulfolobus islandicus binds highly site-specifically to double-stranded DNA and represents a novel type of basic leucine zipper protein
    • Lipps G., Ibanez P., Stroessenreuther T., Hekimian K., and Krauss G.A. The protein ORF80 from the acidophilic and thermophilic archaeon Sulfolobus islandicus binds highly site-specifically to double-stranded DNA and represents a novel type of basic leucine zipper protein. Nucleic Acids Res. 29 (2001) 4973-4982
    • (2001) Nucleic Acids Res. , vol.29 , pp. 4973-4982
    • Lipps, G.1    Ibanez, P.2    Stroessenreuther, T.3    Hekimian, K.4    Krauss, G.A.5
  • 28
    • 0038577149 scopus 로고    scopus 로고
    • A novel type of replicative enzyme harbouring ATPase, primase and DNA polymerase activity
    • Lipps G., Rother S., Hartl C., and Krauss G.A. A novel type of replicative enzyme harbouring ATPase, primase and DNA polymerase activity. EMBO J. 22 (2003) 2516-2535
    • (2003) EMBO J. , vol.22 , pp. 2516-2535
    • Lipps, G.1    Rother, S.2    Hartl, C.3    Krauss, G.A.4
  • 29
    • 2342466121 scopus 로고    scopus 로고
    • The replication protein of the Sulfolobus islandicus plasmid pRN1
    • Lipps G. The replication protein of the Sulfolobus islandicus plasmid pRN1. Biochem. Soc. Trans. 32 (2004) 240-243
    • (2004) Biochem. Soc. Trans. , vol.32 , pp. 240-243
    • Lipps, G.1
  • 31
    • 0035122633 scopus 로고    scopus 로고
    • Comparative sequence analysis of plasmids pME2001 and pME2200 of methanothermobacter marburgensis strains Marburg and ZH3
    • Luo Y., Leisinger T., and Wasserfallen A. Comparative sequence analysis of plasmids pME2001 and pME2200 of methanothermobacter marburgensis strains Marburg and ZH3. Plasmid 45 (2001) 18-30
    • (2001) Plasmid , vol.45 , pp. 18-30
    • Luo, Y.1    Leisinger, T.2    Wasserfallen, A.3
  • 32
    • 0034602365 scopus 로고    scopus 로고
    • Evolution of the family of pRN plasmids and their integrase-mediated insertion into the chromosome of the crenarchaeon Sulfolobus solfataricus
    • Peng X., Holz I., Zillig W., Garrett R.A., and She Q. Evolution of the family of pRN plasmids and their integrase-mediated insertion into the chromosome of the crenarchaeon Sulfolobus solfataricus. J. Mol. Biol. 303 (2000) 449-454
    • (2000) J. Mol. Biol. , vol.303 , pp. 449-454
    • Peng, X.1    Holz, I.2    Zillig, W.3    Garrett, R.A.4    She, Q.5
  • 34
    • 0029128732 scopus 로고
    • The particle SSV1 from the extremely thermophilic archaeon Sulfolobus effects its transfer to recipients by mating
    • Schleper C., Kubo K., and Zillig W. The particle SSV1 from the extremely thermophilic archaeon Sulfolobus effects its transfer to recipients by mating. J. Bacteriol. 177 (1992) 4417-4426
    • (1992) J. Bacteriol. , vol.177 , pp. 4417-4426
    • Schleper, C.1    Kubo, K.2    Zillig, W.3
  • 37
    • 0033581011 scopus 로고    scopus 로고
    • DNA polymerases: structural diversity and common mechanisms
    • Steitz A.T. DNA polymerases: structural diversity and common mechanisms. J. Biol. Chem. 274 (1999) 17395-17398
    • (1999) J. Biol. Chem. , vol.274 , pp. 17395-17398
    • Steitz, A.T.1
  • 38
    • 0034202785 scopus 로고    scopus 로고
    • Two different and highly organized mechanisms of translation initiation in the archaeon Sulfolobus solfataricus
    • Tolsturp N., Sensen C.W., Garrett R.A., and Groth-Clausen I. Two different and highly organized mechanisms of translation initiation in the archaeon Sulfolobus solfataricus. Extremophiles 4 (2000) 175-179
    • (2000) Extremophiles , vol.4 , pp. 175-179
    • Tolsturp, N.1    Sensen, C.W.2    Garrett, R.A.3    Groth-Clausen, I.4
  • 39
    • 12544256546 scopus 로고    scopus 로고
    • Divergent transcriptional and translation signals in archaea
    • Torarinsson E., Klenk H.-P., and Garrett R.A. Divergent transcriptional and translation signals in archaea. Environ. Microbiol. 7 (2005) 47-54
    • (2005) Environ. Microbiol. , vol.7 , pp. 47-54
    • Torarinsson, E.1    Klenk, H.-P.2    Garrett, R.A.3
  • 41
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: proposal for domains archaea, bacteria, and eucarya
    • Woese C.R., Kandler O., and Wheelis M.L. Towards a natural system of organisms: proposal for domains archaea, bacteria, and eucarya. Proc. Natl. Acad. Sci. USA 87 (1990) 4576-4579
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 42
    • 0021984005 scopus 로고
    • Plasmid related anaerobic autotrophy of the novel archaebacterium Sulfolobus ambivalens
    • Zillig W., Yeats S., Holz I., Bock A., Gropp F., Rettenberger M., and Lutz S. Plasmid related anaerobic autotrophy of the novel archaebacterium Sulfolobus ambivalens. Nature 313 (1985) 789-791
    • (1985) Nature , vol.313 , pp. 789-791
    • Zillig, W.1    Yeats, S.2    Holz, I.3    Bock, A.4    Gropp, F.5    Rettenberger, M.6    Lutz, S.7
  • 45
    • 3943064227 scopus 로고    scopus 로고
    • Complete sequence and molecular characterization of pNB101, a rolling-circle replicating plasmid from the haloalkaliphilic archaeon Natronobacterium sp. strain AS7091
    • Zhou M., Xiang H., Sun C., Li Y., Liu J., and Tan H. Complete sequence and molecular characterization of pNB101, a rolling-circle replicating plasmid from the haloalkaliphilic archaeon Natronobacterium sp. strain AS7091. Extremophiles 8 (2004) 91-98
    • (2004) Extremophiles , vol.8 , pp. 91-98
    • Zhou, M.1    Xiang, H.2    Sun, C.3    Li, Y.4    Liu, J.5    Tan, H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.