Comparative sequence analysis of plasmids pME2001 and pME2200 of Methanothermobacter marburgensis strains Marburg and ZH3

Plasmid

Volumn 45, Issue 1, 2001, Pages 18-30

  Luo, Yongneng ^a   Leisinger, Thomas ^a   Wasserfallen, Alain ^a  

^a ETH ZURICH   (Switzerland)

Author keywords

Antisense RNA; Direct repeats; Methanothermobacter; Plasmids; Rep protein

Indexed keywords

COMPLEMENTARY RNA; DEOXYCYTIDINE KINASE; HELICASE; HELIX LOOP HELIX PROTEIN;

AMINO TERMINAL SEQUENCE; ARTICLE; CODON; GENE DUPLICATION; GENE OVEREXPRESSION; IMMUNITY; METHANOBACTERIUM THERMOAUTOTROPHICUM; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OPERON; PLASMID; PROTEIN MOTIF; SEQUENCE ANALYSIS; STRAIN DIFFERENCE;

ARCHAEA; ESCHERICHIA COLI; ILEX; METHANOBACTERIUM; METHANOBACTERIUM THERMOAUTOTROPHICUM; METHANOTHERMOBACTER; METHANOTHERMOBACTER MARBURGENSIS; METHANOTHERMOBACTER THERMAUTOTROPHICUS;

EID: 0035122633     PISSN: 0147619X     EISSN: None     Source Type: Journal    
DOI: 10.1006/plas.2000.1493     Document Type: Article

References (61)

1. Heterogeneity of small plasmids from halophilic archaea
2. Basic local alignment search tool
3. The genetic element pSSVx of the extremely thermophilic crenarchaeon Sulfolobus is a hybrid between a plasmid and a virus
4. M13 and pUC vectors with new unique restriction sites for cloning
5. Replication control of plasmid RI: RepA synthesis is regulated by CopA RNA through inhibition of leader peptide translation
6. The integrated conjugative plasmid pSAM2 of Streptomyces ambofaciens is related to temperate bacteriophages
7. Complete nucleotide sequence of plasmid pME2001 of Methanobaclerium thermoautotrophicum (Marburg)
8. The helix-turn-helix DNA binding motif
9. Gene structure, organization, and expression in archaebacteria
10. Complete genome sequence of the methanogenic archaeon Methanococcus jannaschii
11. A double-hexamer archaeal minichromosome maintenance protein is an ATP-dependent DNA helicase
12. Natural plasmids and plasmid vectors of halophiles
13. Replication and control of circular bacterial plasmids
14. Rolling circle-replicating plasmids from gram-positive and gram-negative bacteria: A wall falls
15. Antisense RNA
16. Sequence of plasmid pGT5 from the archaeon Pyrococcus abyssi: Evidence for rolling-circle replication in a hyperthermophile
17. Acetate assimilation and the synthesis of alanine, aspartate and glutamate in Methanobacterium thermoautotrophicum
18. Sequence-directed curvature of DNA
19. A symmetrical six-base-pair target site sequence determines Tn10 insertion specificity
20. Structure and function of the transcription activator protein cH and its regulatory signals
21. A sequence property approach to searching protein databases
22. Analysis of the halobactcrial plasmid pHK2 minimal replicon
23. High efficiency transformation of Escherichia colt with plasraids
24. Effects or rare codon clusters on high-level expression of heterologous proteins in Escherichia coli
25. Sulfolobus islandicus plasmids pRN1 and pRN2 share distant but common evolutionary ancestry
26. Purification and use of Methanobacterium wolfei pseudomurein endopeptidase for lysis of Methanobacterium thermoautotrophicum
27. Mouse MCM proteins: Complex formation and transportation to the nucleus
28. Molecular analysis of pDL 10 from Acidianus ambivalens reveals a family of related plasmids from extremely thermophilic and acidophilic archaea
29. DNA bending at adenine-thymine tracts
30. A superfamily of ATPases with diverse functions containing either classical or deviant ATP-binding motif
31. A common set of conserved motifs in a vast variety of putative nucleic acid-dependent ATPases including MCM proteins involved in the initiation of eukaryofic DNA replication
32. Four new derivatives of the broad-host-range cloning vector pBBRIMCS, carrying different antibiotic-resistance cassettes
33. pBBRIMCS: A broad-host-range cloning vector
34. Plasmids, phages and gene transfer in methanogenic bacteria
35. A rolling circle replication initiator protein with a nucleotidyl-transferase activity encoded by the plasmid pGT5 from the hyperthermophilic archacon Pyrococcus abyssi
36. A plasmid in the archaebacterium Methanobacterium thermoautotrophicum
37. Identification of a transcript and its promoter region on the archaebacterial plasmid pME2001
38. Potential shuttle vectors based on the methanogen plasmid pME2001
39. A genetic system for Archaea of the genus Methanosarcina: Liposome-mediated transformation and construction of shuttle vectors
40. Construction of a series of pACYC-derived plasmid vectors
41. Minimal replication origin of the 200-kilobase Halobacterium plasmid pNRC100
42. Modular organization of related archaeal plasmids encoding different restriction-modification systems in Methanobacterium thermoformicicum
43. Plasmid pHH1 of Halobacterium salinarium: Characterization of the replicon region, the gas vesicle gene cluster and insertion elements
44. Molecular analysis of Methanobacterium phage ΨM2
45. High efficiency 5 min transformation of Escherichia coli
46. DNA sequencing with chain-terminating inhibitors
47. s) of Methanobacterium thermoautotrophicum
48. Plasmids of methanogenic archaea
49. Characterization of a plasmid carried by Methanobacterium thermoautotrophicum ZH3, a methanogen closely related to Methanobacterium thermoautotrophicum Marburg
50. Vector for IS element entrapment and functional characterization based on turning on expression of distal promoterless genes
51. Archaeal transcription factors and their role in transcription initiation
52. Plasmid ColE1 incompatibility determined by interaction of RNA I with primer transcript
53. Characterization of pURB500 from the archaeon Methanococcus maripaludis and construction of a shuttle vector
54. Recombination-dependent concatemeric plasmid replication
55. Phylogenetic analysis of 18 thermophilic Methanobacterium isolates supports the proposals to create a new genus, Methanothermobacter gen. nov., and to reclassify several isolates in three species, Methanothermobacter thermautotrophicus comb. nov., Methanothermobucter wolfeii comb. nov., and Methanothermobacter marburgensis sp. nov.
56. Improved M 13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
57. Homology among nearly all plasmids infecting three Bacillus species
58. Genetic elements in the extremely thermophilic archaeon Sulfolobus
59. On finding all suboptimal foldings of an RNA molecule