Identification of resistance gene analogs as markers of disease resistance loci in oats, using near-isogenic lines

Plant Breeding

Volumn 125, Issue 4, 2006, Pages 347-351

  Irigoyen, M L ^a   Loarce, Y ^a   Friero, E ^a   Fominaya, A ^a   Ferrer, E ^a  

^a UNIVERSITY OF ALCALÁ   (Spain)

Author keywords

A. byzantina; Avena sativa; Near isogenic lines; Puccinia coronata; RAPD; Resistance gene analogs

Indexed keywords

AVENA; AVENA BYZANTINA; AVENA SATIVA; PUCCINIA CORONATA;

EID: 33746431341     PISSN: 01799541     EISSN: 14390523     Source Type: Journal    
DOI: 10.1111/j.1439-0523.2006.01258.x     Document Type: Article

References (26)

1. Barbosa-Neto, J. F., W. Siripoowiwat, L. S. O'Donoughue, S. M. Gray, D. M. Smith, F. L. Kolb, C. Gourmet, C. M. Brown, and M. E. Sorrells, 2000: Chromosomal regions associated with yellow dwarf virus resistance in oat. Euphytica 114, 67-76.
2. Bush, A. L., R. P. Wise, P. J. Rayapati, and M. Lee, 1994: Restriction fragment length polymorphisms linked to genes for resistance to crown rust (Puccinia coronata) in near-isogenic lines of hexaploid oat (Avena sativa). Genome 37, 823-831.
3. Frey, K. J., J. A. Browning, and M. D. Simons, 1985: Registration of 'Multiline E76' and 'Multiline E77' oats. Crop Sci. 25, 1125.
4. Frey, K. J., M. D. Simons, L. J. Michel, J. P. Murphy, and J. A. Browning, 1988: Registration of Webster oat isolines as parental lines. Crop Sci. 28, 386-387.
5. Hammond-Kosack, K. E., and J. E. Parker, 2003: Deciphering plant-pathogen communication: fresh perspectives for molecular resistance breeding. Curr. Opin. Biotechnol. 14, 177-193.
6. Irigoyen, M. L., Y. Loarce, A. Fominaya, and E. Ferrer, 2004: Isolation and mapping of resistance gene analogs from the Avena strigosa genome. Theor. Appl. Genet. 109, 713-724.
7. Kanazin, V., L. F. Marek, and R. C. Shoemaker, 1996: Resistance gene analogs are conserved and clustered in soybean. Proc. Natl Acad. Sci. USA 93, 11746-11750.
8. Lander, E. S., P. Green, J. Abrahamson, A. Barlow, M. J. Daly, S. E. Lincoln, and L. Newburg, 1987: MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1, 174-181.
9. Leister, D., 2004: Tandem and segmental gene duplication and recombination in the evolution of plant disease resistance gene. Trends Genet. 20, 116-122.
10. Leister, D., A Ballvora, F. Salamini, and C. Gebhardt, 1996: A PCR-based approach for isolating pathogen resistance genes from potato with potential for wide application in plants. Nat. Genet. 14, 421-429.
11. Meyers, B. C., A. Kozik, A. Griego, H. Kuang, and R. W. Michelmore, 2003: Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. Plant Cell 15, 809-834.
12. O'Donoughue, L. S., S. F. Kianian, P. J. Rayapati, G. A. Penner, M. E. Sorrells, S. D. Tanskley, R. L. Phillips, H. W. Rines, M. Lee, G. Fedak, S. J. Molnar, D. Hoffman, C. A. Salas, B. Wu, E. Autrique, and A. van Deynze, 1995: A molecular linkage map of cultivated oat. Genome 38, 368-380.
13. Penner, G. A., J. Chong, M. Lévesque-Lemay, S. J. Molnar, and G. Fedak, 1993: Identification of a RAPD marker linked to the oat stem rust gene Pg3. Theor. Appl. Genet. 85, 702-705.
14. Portyanko, V. A., D. Hoffman, M. Lee, and J. B. Holland, 2001: A linkage map of hexaploid oat based on grass anchor DNA clones and its relationship to other oat maps. Genome 44, 249-265.
15. Portyanko, V. A., G. Chen, H. W. Rines, R. L. Phillips, K. J. Leonard, G. E. Ochocki, and D. D. Stuthman, 2005: Quantitative trait loci for partial resistance to crown rust, Puccinia coronata, in cultivated oat Avena sativa L. Theor. Appl. Genet. 111, 313-324.
16. Sambrook, F., E. F. Fritsch, and T. Maniatis, 1989: Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York.
17. Schüller, C., G. Backes, G. Fischbeck, and A. Jahoor, 1992: RFLP markers to identify the alleles on the Mla locus conferring powdery mildew resistance in barley. Theor. Appl. Genet. 84, 330-338.
18. Sharp, P. J., M. Kreiss, P. Shewry, and M. D. Gale, 1988: Location of β-amylase sequences in wheat and its relatives. Theor. Appl. Genet. 75, 289-290.
19. Wight, C. P., N. A. Tinker, S. F. Kianian, M. E. Sorrells, L. S. O'Donoughue, D. L. Hoffman, S. Groh, G. J. Scoles, C. D. Li, F. H. Webster, R. L. Phillips, H. W. Rines, S. M. Livingston, K. C. Armstrong, G. Fedak, and S. J. Molnar, 2003: A molecular marker map in 'Kanota' x 'Ogle' hexaploid oat (Avena spp.) enhanced by additional markers and a robust framework. Genome 46, 28-47.
20. Wight, C. P., L. S. O'Donoughue, J. Chong, N. A. Tinker, and S. J. Molnar, 2004: Discovery, localization, and sequence characterization of molecular markers for the crown rust genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.). Mol. Breed. 14, 349-361.
21. Williams, J. G. K., A. R. Kubelik, K. J. Livak, J. A. Rafalski, and S. V. Tingey, 1990: DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acid Res. 18, 6531-6535.
22. Young, N. D., D. Zamir, M. W. Ganal, and S. D. Tanskley, 1988: Use of isogenic lines and simultaneous probing to identify DNA markers tightly linked to the Tm-2a gene in tomato. Genetics 120, 579-585.
23. Yu, Y., G. Buss, and M. Maroof, 1996: Isolation of a superfamily of candidate resistance genes in soybean based on a conserved nucleotide binding site. Proc. Natl. Acad. Sci. USA 93, 11751-11756.
24. Yu, G. X., E. Braun, and R. P. Wise, 2001: Rds and Rih mediate hypersensitive cell death independent of gene-for-gene resistance to the oat crown rust pathogen Puccinia coronata f. sp. Avenue. Mol. Plant Microb. Interact. 14, 1376-1383.
25. Zhu, S., and H. F. Kaeppler, 2003: Identification of quantitative trait loci for resistance to crown rust in oat line MAM17-5. Crop Sci. 43, 358-366.
26. Zhu, T., Y. Wang, J. Q. Chen, H. Araki, Z. Jing, K. Jiang, J. Shen, and D. Tian, 2004: Genome-wide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes. Mol. Gen. Genomics 271, 402-415.