Classifying structural alterations of the cytoskeleton by spectrum enhancement and descriptor fusion

Journal of Biomedical Optics

Volumn 11, Issue 2, 2006, Pages

  Crosta, Giovanni F ^a   Urani, Chiara ^a   Fumarola, Laura ^a  

^a UNIVERSITY OF MILANO BICOCCA   (Italy)

Author keywords

Cytotoxicity; Feature extraction; Fourier analysis; Fractal analysis; Hepatocytes; Image classification; Microtubules; Multivariate statistics; Spectrum enhancement

Indexed keywords

ALGORITHM; ANIMAL; ARTICLE; ARTIFICIAL INTELLIGENCE; AUTOMATED PATTERN RECOGNITION; CELL CULTURE; COMPUTER ASSISTED DIAGNOSIS; CYTOLOGY; CYTOSKELETON; EVALUATION; FLUORESCENCE MICROSCOPY; IMAGE ENHANCEMENT; INFORMATION RETRIEVAL; LIVER CELL; MALE; METHODOLOGY; MICROTUBULE; RAT; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; SPECTROFLUOROMETRY; SPRAGUE DAWLEY RAT; ULTRASTRUCTURE;

ALGORITHMS; ANIMALS; ARTIFICIAL INTELLIGENCE; CELLS, CULTURED; CYTOSKELETON; HEPATOCYTES; IMAGE ENHANCEMENT; IMAGE INTERPRETATION, COMPUTER-ASSISTED; INFORMATION STORAGE AND RETRIEVAL; MALE; MICROSCOPY, FLUORESCENCE; MICROTUBULES; PATTERN RECOGNITION, AUTOMATED; RATS; RATS, SPRAGUE-DAWLEY; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SPECTROMETRY, FLUORESCENCE;

BIOLOGICAL MATERIALS; FEATURE EXTRACTION; FOURIER TRANSFORMS; FRACTALS; IMAGE ANALYSIS; MORPHOLOGY; STATISTICAL OPTICS;

CYTOSKELETON; CYTOTOXICITY; DESCRIPTOR FUSION; HEPATOCYTES; IMAGE CLASSIFICATION; MICROTUBULES; SPECTRUM ENHANCEMENT;

CYTOLOGY;

EID: 33746418115     PISSN: 10833668     EISSN: 15602281     Source Type: Journal    
DOI: 10.1117/1.2187423     Document Type: Article

References (62)

1. H. C. Joshi, "Microtubule dynamics in living cells", Curr. Opin. Cell Biol. 10, 35-44 (1998). (Pubitemid 28066119)
2. A. Lambrechts, M. Van Troys, and C. Ampe, "The actin cytoskeleton in normal and pathological cell motility", Int. J. Biochem. Cell Biol. 36, 1890-1909 (2004). (Pubitemid 38760020)
3. C. Urani, E. Chiesara, P. Galvani, L. Marabini, A. Santagostino, and M. Camatini, "Benomyl affects the microtubule cytoskeleton and the glutathione level of mammalian primary cultured hepatocytes", Toxicol. Lett. 76, 135-144 (1995).
4. C. Urani, E. Brambilla, A. Santagostino, and M. Camatini, "1-Methyl-4-phenyl-1, 2, 3, 6-tetrahydropyridine (MPTP) affects the actin cytoskeleton and calcium level of Swiss 3T3 mouse fibroblasts", Toxicology 91, 117-126 (1994). (Pubitemid 24246856)
5. D. M. Toivola and J. E. Eriksson, "Toxins affecting cell signalling and alteration of cytoskeletal structure", Toxicol. in Vitro 13, 521-530 (1999). (Pubitemid 29354172)
6. G. Bellomo and F. Mirabelli, "Oxidative stress and cytoskeletal alterations", Ann. N. Y. Acad. Sci. 663, 97-109 (1992). (Pubitemid 23090528)
7. M. Marinovich, "The role of actin in the transduction of toxic effect", Pharmacol. Res. 24, 319-336 (1991).
8. W. Li, Y. Zhao, and I.-N. Chou, "Alterations in cytoskeletal protein sulphydryls and cellular glutathione in cultured cells exposed to cadmium and nickel ions", Toxicology 77, 65-79 (1993).
9. M. Camatini, P. Bonfanti, A. Colombo, C. Urani, and S. Crippa, "Cellular and molecular targets of benzo[a] pyrene and metal toxicity in Xenopus laevis embryos and in HepG2 cells", ATLA 27, 325-337 (1999). (Pubitemid 29282881)
10. Y. Zhao, W. Li, and I.-N. Chou, "Cytoskeletal perturbation induced by herbicides, 2, 4-dichlorophenoxyacetic acid (2, 4-D) and 2, 4, 5-trichlorophenoxyacetic acid (2, 4, 5-T)", J. Toxicol. Environ. Health 20, 11-26 (1987). (Pubitemid 17013626)
11. I.-N. Chou, W. Li, and G. B. Zamansky, "Fluorescence microscopic examination of cytoskeletal elements", In Methods in Toxicology, C. A. Tyson and J. M. Frazier, Eds., pp. 81-95, Academic Press, San Diego, CA (1994).
12. J. F. Nagelkerke, B. Van De Water, I. M. Twiss, J. P. Zoetewey, H. J. G. M. De Bont, P. Dogterom, and G. Mulder, "Role of microtubuli in secretion of very-low-density lipoprotein in isolated rat hepatocytes: early effects of thiol reagents", Hepatology (Philadelphia, PA, U. S.) 14, 1259-1268 (1991).
13. J. Savory, Y. Huang, M. M. Herman, and M. R. Wills, "Quantitative image analysis of temporal changes in tau and neurofilament proteins during the course of acute experimental neurofibrillary degeneration; non-phosphorylated epitopes procede phosphorylation", Brain Res. 707, 272-281 (1996).
14. A. Andrieux, P. A. Salin, and D. Job, "Un rôle pour les microtubules dans les pathologies psychiatriques?" Pathol. Biol. 52, 89-92 (2004). (Pubitemid 38296514)
15. M. Zaffaroni, "Biological indicators of the neurodegenerative phase of multiple sclerosis", J. Neurol. Sci. 24, S279-S282 (2003). (Pubitemid 37493201)
16. J. Y. Rao, R. E. Hurst, W. D. Bales, P. L. Jones, R. A. Bass, L. T. Archer, and G. P. Hemstreet, "Cellular F-actin levels as a marker for cellular transformation: relationship to cell division and differentiation" , Cancer Res. 50, 2215-2220 (1990). (Pubitemid 20134471)
17. V. M. Y. Lee, "Disruption of the cytoskeleton in Alzheimer's disease", Curr. Opin. Neurobiol. 5, 663-668 (1995).
18. P. M. Checchi, J. H. Nettles, J. Zhou, J. P. Snyder, and H. C. Joshi, "Microtubule-interacting drugs for cancer treatment", Trends Pharmacol. Sci. 24, 361-365 (2003). (Pubitemid 37315528)
19. K. W. Wood, W. D. Cornwell, and J. R. Jackson, "Past and future of the mitotic spindle as an oncology target", Curr. Opin. Pharmacol. 1, 370-377 (2001). (Pubitemid 33585986)
20. M. A. Jordan and L. Wilson, "Microtubules and actin filaments: dynamic targets for cancer chemotherapy", Curr. Opin. Pharmacol. 10, 123-130 (1998). (Pubitemid 28066130)
21. M. A. Jordan and L. Wilson, "Microtubules as a target for anticancer drugs", Nature Rev. 4(4), 253-265 (2004). (Pubitemid 38525281)
22. http://www.cytokinetics.com.
23. P. Geladi, H. Isaksson, L. Lindqvist, S. Wold, and K. Esbensen, "Principal components analysis of multivariate images", Chemom. Intell. Lab. Syst. 5, 209-220 (1989).
24. J. P. Marques De Sá, Pattern Recognition, Springer, Berlin (2001).
25. P. A. Dufort and C. J. Lumsden, "Cellular automation model of the actin cytoskeleton", Cell Motil. Cytoskeleton 25, 87-104 (1993). (Pubitemid 23133144)
26. L. Edelstein-Keshet and G. B. Ermentrout, "A model for actinfilament length distribution in a lamellipod", J. Math. Biol. 43, 325-355 (2001). (Pubitemid 33772358)
27. M. A. Aon and S. Cortassa, "Coherent and robust modulation of a metabolic network by cytoskeletal organization and dynamics", Biophys. Chem. 97, 213-231 (2002). (Pubitemid 34603754)
28. M. A. Aon and S. Cortassa, "On the fractal nature of cytoplasm", FEBS Lett. 344, 1-4 (1994). (Pubitemid 24147295)
29. M. A. Aon, S. Cortassa, and D. Lloyd, "Chaotic dynamics and fractal space biochemistry: simplicity underlies complexity", Cell Biol. Int. 24, 581-587 (2000).
30. L. M. Lifshitz, "Tracking cells and subcellular features", Chap. 8 in Advances in Image Analysis, Y. Mahdavieh and R. C. Gonzalez, Eds., pp. 218-243, SPIE Press, Bellingham, WA (1992).
31. D. B. Thomason, O. Anderson III, and V. Menon, "Fractal analysis of cytoskeleton rearrangement in cardiac muscle during head-down tilt", J. Appl. Physiol. 81, 1522-1527 (1996). (Pubitemid 26349602)
32. W. J. Karlon, P. P. Hsu, S. Li, S. Chien, A. D. McCullouch, and J. H. Omens, "Measurement of orientation and distribution of cellular alignment and cytoskeletal organisation", Ann. Biomed. Eng. 27, 712-720 (1999). (Pubitemid 129583989)
33. M. M. Knight, B. D. Idowu, D. A. Lee, and D. L. Bader, "Temporal changes in cytoskeletal organisation within isolated chondrocytes quantified using a novel image analysis technique", Med. Biol. Eng. Comput. 39, 397-404 (2001). (Pubitemid 32600736)
34. A. M. McGough and R. Josephs, "On the structure of erythrocyte spectrin in partially expanded membrane skeletons", Proc. Natl. Acad. Sci. U. S. A. 87, 5208-5212 (1990).
35. W. M. Petroll, H. D. Cavanagh, P. Barry, P. Andrews, and J. V. Jester, "Quantitative analysis of stress fiber orientation during corneal wound contraction", J. Cell. Sci. 104, 353-362 (1993).
36. M. Kohler, M. Aufderheide, and D. Ramm, "Method for the description of differences in the filamentous structure of the cytoskeleton in cultured cells", Toxicol. Lett. 72, 33-42 (1994). (Pubitemid 24180210)
37. V. L. Taylor and M. J. Costello, "Fourier analysis of textural variations in human normal and cataractous lens nuclear fiber cell cytoplasm", Exp. Eye Res. 69, 163-174 (1999). (Pubitemid 29369291)
38. T. Delhaas, S. Van Engeland, J. Broers, C. Bouten, N. Kuijpers, F. Ramaekers, and L. H. E. H. Snoeckx, "Quantification of cytoskeletal deformation in living cells based on hierarchical feature vector matching", Am. J. Physiol.: Cell Physiol. 283, C639-C645 (2002). (Pubitemid 34787547)
39. X. Chen, M. Velliste, S. Weinstein, J. W. Jarvik, and R. F. Murphy, "Location proteomics: building subcellular location trees from high resolution 3D fluorescence microscope images of randomly tagged proteins", In Manipulation and Analysis of Biomolecules, Cells and Tissues, D. V. Nicolau, J. Enderlein, R. C. Leif, and D. Farkas, Eds., Proc. SPIE 4962, 298-306 (2003).
40. K. Huang, M. Velliste, and R. F. Murphy, "Feature reduction for improved recognition of subcellular location patterns in fluorescence microscope images", In Manipulation and Analysis of Biomolecules, Cells and Tissues, D. V. Nicolau, J. Enderlein, R. C. Leif, and D. Farkas, Eds., Proc. SPIE 4692, 307-318 (2003).
41. G. F. Crosta, C. Urani, and L. Fumarola, "Fourier and fractal analysis of cytoskeletal morphology altered by xeno-biotics", In Manipulation and Analysis of Biomolecules, Cells and Tissues, D. V. Nicolau, J. Enderlein, R. C. Leif, and D. Farkas, Eds., Proc. SPIE 4962, 329-340 (2003).
42. G. F. Crosta, C. Urani, and L. Fumarola, "Morphological analysis and classification of cytoskeletal structures", In Interdisciplinary Applications of Fractal & Chaos Theory, R. Dobrescu and C. Vasilescu, Eds., pp. 181-195, Romanian Academy Publishing House, Bucharest (2004).
43. L. Fumarola, "Morfologia quantitativa del danno biologico su colture cellulari", MSc. Thesis, College of Sciences, Università degli Studi Milano-Bicocca, Milan (July 2003).
44. G. F. Crosta, C. Urani, and L. Fumarola, "A cytoskeletal injury classifier based on 'spectrum enhancement' and data fusion", In Manipulation and Analysis of Biomolecules, Cells and Tissues, D. V. Nicolau, J. Enderlein, R. C. Leif, and D. Farkas, Eds., Proc. SPIE 5322, 83-94 (2004).
45. G. F. Crosta, C. Urani, and L. Fumarola, "Estimating structural damage of the cytoskeleton by means of morphological descriptors", In Biophotonics New Frontier: From Genome to Proteome, M. D. Faupel and P. P. Meyrueis, Eds., Proc. SPIE 5461, 78-89 (2004). (Pubitemid 40108683)
46. J. C. Russ, Fractal Surfaces, Plenum, New York (1994).
47. Y. Meyer, Oscillating Patterns in Image Processing and Nonlinear Evolution Equations-The Fifteenth Dean Jacqueline B. Lewis Memorial Lectures, AMS, Providence, RI (2001).
48. V. Kindratenko, "Development and application of image analysis techniques for identification and classification of microscopic particles", PhD Dissertation, Department of Chemistry, University of Antwerp (1997); https://netfiles.uiuc.edu/kindrtnk/www.
49. G. F. Crosta, "Texture analysis of phosphor screens", J. Phys. E 10, 187-190 (1977).
50. S. Holler, S. Zomer, G. F. Crosta, Y.-L. Pan, R. K. Chang, and J. R. Bottiger, "Multivariate analysis and classification of two dimensional angular optical scattering (TAOS) patterns from aggregates", Appl. Opt. 43(33), 6198-6206 (2004).
51. G. F. Crosta, C. Sung, B. Kang, C. Ospina, and P. Stenhouse, "Quantitative morphology of aluminum silicate nanoaggregates", Mater. Res. Soc. Symp. Proc. 738, G.15.1-G.15.6 (2003); http://www.mrs.org/ publications/epubs/proceedings/fal2002/g.
52. B. Kang, G. F. Crosta, P. J. Stenhouse, and C. Sung, "Microscopy and quantitative morphology of aluminum silicate nanoparticles grown on organic template", J. Nanosci. Nanotechnol. 5(2), 334-345 (2005). (Pubitemid 44502242)
53. G. F. Crosta, G. M. Corbetta, L. Martignoni, M. C. Camatini, T. Dolukhanyan, B. Kang, C. Sung, S. Cencetti, and C. Regazzoni, "Tread abrasion, rubber degradation and the mathematical morphology of tire debris particles", In Proc. 162nd Meeting of the Rubber Division, American Chemical Society, pp. ACS-RD, Akron, OH (2002); http://rubber.org/applications/ papersales/papersales/papers.cfm?meetingnum=162.
54. D. L. Ruderman and W. Bialek, "Statistics of natural images: scaling in the woods", Phys. Rev. Lett. 73(6), 814-817 (1994). (Pubitemid 24976330)
55. W. H. Press, S. A. Teukolsky, W. T. Vetterling, and B. P. Flannery, Numerical Recipes in C-The Art of Scientific Computing, 2nd ed., Cambridge University Press, Cambridge, UK (1992).
56. http://www.trusoft.netmegs.com/.
57. K. Backhaus, B. Erichson, W. Plinke, and R. Weiber, Multivariate Analysemethoden, 10th ed., Springer, Berlin (2003).
58. R. Sedgewick, Algorithms, 2nd ed., Addison-Wesley, Reading, MA (1988).
59. Appl. Stat. 18, 103 (1969); http://lib.stat.cmu.edu/apstat.
60. Q-Parvus, http://parvus.unige.it.
61. J. R. Swedlow, K. Hu, P. D. Andrews, D. S. Roos, and J. M. Murray, "Measuring tubulin content in Toxoplasma gondii: a comparison of laser-scanning confocal and wide-field fluorescence microscopy", Proc. Natl. Acad. Sci. U. S. A. 99(4), 2014-2019 (2002). (Pubitemid 34169006)
62. C. Miranda, Istituzioni di Analisi Funzionale Lineare, Vol. I, Unione Matematica Italiana, Bologna (1978).