-
1
-
-
0346967395
-
On the approximation of protein threading
-
T. Akutsu and S. Miyano. On the approximation of protein threading. Theoretical Computer Science, 210:261-275, 1999.
-
(1999)
Theoretical Computer Science
, vol.210
, pp. 261-275
-
-
Akutsu, T.1
Miyano, S.2
-
2
-
-
10044297099
-
Protein threading problem: From mathematical models to parallel implementations
-
Special Issue on Computational Molecular Biology/Bioinformatics, Eds. H. Greenberg, D. Gusfield, Y. Xu, W. Hart, M. Vingro
-
R. Andonov, S. Balev and N. Yanev, Protein Threading Problem: From Mathematical Models to Parallel Implementations, INFORMS Journal on Computing, 2004; 16(4): Special Issue on Computational Molecular Biology/Bioinformatics, Eds. H. Greenberg, D. Gusfield, Y. Xu, W. Hart, M. Vingro
-
(2004)
INFORMS Journal on Computing
, vol.16
, Issue.4
-
-
Andonov, R.1
Balev, S.2
Yanev, N.3
-
3
-
-
33746295610
-
Solving the protein threading problem by lagrangian relaxation
-
Bergen, Norway, September 14 -17
-
Stefan Balev, Solving the Protein Threading Problem by Lagrangian Relaxation, WABI 2004, 4th Workshop on Algorithms in Bioinformatics, Bergen, Norway, September 14 -17, 2004
-
(2004)
WABI 2004, 4th Workshop on Algorithms in Bioinformatics
-
-
Balev, S.1
-
4
-
-
0028015988
-
The protein threading problem with sequence amino acid interaction preferences is NP-complete
-
R. Lathrop, The protein threading problem with sequence amino acid interaction preferences is NP-complete, Protein Eng., 1994; 7: 1059-1068
-
(1994)
Protein Eng.
, vol.7
, pp. 1059-1068
-
-
Lathrop, R.1
-
5
-
-
3142735527
-
Protein threading statistics: An attempt to assess the significance of a fold assignment to a sequence
-
I. Tsigelny Ed, International University Line: La Jolla, California
-
A. Marin, J.Pothier, K. Zimmermann and J-F. Gibrat, Protein threading statistics: an attempt to assess the significance of a fold assignment to a sequence, Protein structure prediction: bioinformatic approach, I. Tsigelny Ed, International University Line: La Jolla, California, 2002
-
(2002)
Protein Structure Prediction: Bioinformatic Approach
-
-
Marin, A.1
Pothier, J.2
Zimmermann, K.3
Gibrat, J.-F.4
-
6
-
-
18744411506
-
FROST: A filter based recognition method
-
Dec 1
-
A. Marin, J.Pothier, K. Zimmermann, J-F. Gibrat, FROST: A Filter Based Recognition Method, Proteins, 2002 Dec 1; 49(4): 493-509
-
(2002)
Proteins
, vol.49
, Issue.4
, pp. 493-509
-
-
Marin, A.1
Pothier, J.2
Zimmermann, K.3
Gibrat, J.-F.4
-
7
-
-
0004096390
-
-
Chapter 8: Brooks/Cole Publishing Company, 511 Forest Lodge Road, Pacific Grove, CA 93950
-
J.C. Setubal, J. Meidanis, Introduction to computational molecular biology, 1997, Chapter 8: 252-259, Brooks/Cole Publishing Company, 511 Forest Lodge Road, Pacific Grove, CA 93950
-
(1997)
Introduction to Computational Molecular Biology
, pp. 252-259
-
-
Setubal, J.C.1
Meidanis, J.2
-
9
-
-
84867481761
-
-
Dec
-
D. Fischer, http://www.cs.bgu.ac.il/ dfishcer/CAFASP3/, Dec 2002
-
(2002)
-
-
Fischer, D.1
-
10
-
-
84907095419
-
R: A language and environment for statistical computing
-
Vienna, Austria
-
R: A language and environment for statistical computing, R Foundation for Statistical Computing, Vienna, Austria, 2004, http://www.R-project.org
-
(2004)
R Foundation for Statistical Computing
-
-
-
12
-
-
4544326903
-
Opportunities for combinatorial optimization in computational biology
-
H. J. Greenberg, W. E. Hart, and G. Lancia. Opportunities for combinatorial optimization in computational biology. INFORMS Journal on Computing, 16(3), 2004.
-
(2004)
INFORMS Journal on Computing
, vol.16
, Issue.3
-
-
Greenberg, H.J.1
Hart, W.E.2
Lancia, G.3
-
13
-
-
0034963883
-
Computational challenges in structural and functional genomics
-
T. Head-Gordon and J. C. Wooley. Computational challenges in structural and functional genomics. IBM Systems Journal, 40:265-296, 2001.
-
(2001)
IBM Systems Journal
, vol.40
, pp. 265-296
-
-
Head-Gordon, T.1
Wooley, J.C.2
-
14
-
-
3142726796
-
Computational biology at the beginning of the post-genomic era
-
R. Wilhelm, editor, Informatics: 10 Years Back - 10 Years Ahead, Springer-Verlag
-
T. Lengauer. Computational biology at the beginning of the post-genomic era. In R. Wilhelm, editor, Informatics: 10 Years Back - 10 Years Ahead, volume 2000 of Lecture Notes in Computer Science, pages 341-355. Springer-Verlag, 2001.
-
(2001)
Lecture Notes in Computer Science
, vol.2000
, pp. 341-355
-
-
Lengauer, T.1
-
15
-
-
0027122748
-
Proteins. one thousand families for the molecular biologist
-
C. Chothia. Proteins. one thousand families for the molecular biologist. Nature, 357:543-544, 1992.
-
(1992)
Nature
, vol.357
, pp. 543-544
-
-
Chothia, C.1
-
16
-
-
0029912991
-
Global optimum protein threading with gapped alignment and empirical pair potentials
-
R.H. Lathrop and T.F. Smith. Global optimum protein threading with gapped alignment and empirical pair potentials. J. Mol. Biol., 255:641-665, 1996.
-
(1996)
J. Mol. Biol.
, vol.255
, pp. 641-665
-
-
Lathrop, R.H.1
Smith, T.F.2
-
17
-
-
0037731050
-
Protein structure prediction by linear programming
-
J. Xu, M. Li, G. Lin, D. Kim, and Y. Xu. Protein structure prediction by linear programming. In Proceedings of The 7th Pacific Symposium on Biocomputing (PSB), pages 264-275, 2003.
-
(2003)
Proceedings of the 7th Pacific Symposium on Biocomputing (PSB)
, pp. 264-275
-
-
Xu, J.1
Li, M.2
Lin, G.3
Kim, D.4
Xu, Y.5
-
18
-
-
0242369082
-
RAPTOR: Optimal protein threading by linear programming
-
J. Xu, M. Li, G. Lin, D. Kim, and Y. Xu. RAPTOR: optimal protein threading by linear programming. Journal of Bioinformatics and Computational Biology, 1(1):95-118, 2003.
-
(2003)
Journal of Bioinformatics and Computational Biology
, vol.1
, Issue.1
, pp. 95-118
-
-
Xu, J.1
Li, M.2
Lin, G.3
Kim, D.4
Xu, Y.5
-
19
-
-
0034663738
-
Protein threading using PROSPECT: Design and evaluation
-
Y. Xu and D. Xu. Protein threading using PROSPECT: design and evaluation. Proteins: Structure, Function, and Genetics, 40:343-354, 2000.
-
(2000)
Proteins: Structure, Function, and Genetics
, vol.40
, pp. 343-354
-
-
Xu, Y.1
Xu, D.2
-
20
-
-
0031750906
-
An efficient computational method for globally optimal threading
-
Y. Xu, D. Xu, and E. C. Uberbacher. An efficient computational method for globally optimal threading. Journal of Computational Biology, 5(3):597-614, 1998.
-
(1998)
Journal of Computational Biology
, vol.5
, Issue.3
, pp. 597-614
-
-
Xu, Y.1
Xu, D.2
Uberbacher, E.C.3
-
21
-
-
35248857063
-
Speedup LP approach to protein threading via graph reduction
-
Proceedings of WABI 2003: Third Workshop on Algorithms in Bioinformatics, Springer-Verlag
-
J. Xu. Speedup LP approach to protein threading via graph reduction. In Proceedings of WABI 2003: Third Workshop on Algorithms in Bioinformatics, volume 2812 of Lecture Notes in Computer Science, pages 374-388. Springer-Verlag, 2003.
-
(2003)
Lecture Notes in Computer Science
, vol.2812
, pp. 374-388
-
-
Xu, J.1
-
22
-
-
0028593509
-
Protein superfamilies and domain superfolds
-
C.A Orengo, T. D. Jones, and J. M. Thornton. Protein superfamilies and domain superfolds. Nature, 372:631-634, 1994.
-
(1994)
Nature
, vol.372
, pp. 631-634
-
-
Orengo, C.A.1
Jones, T.D.2
Thornton, J.M.3
|