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Volumn 16, Issue 9, 2004, Pages 961-974

Parallel divide and conquer approach for the protein threading problem

Author keywords

Integer programming; Network flow optimization; Protein threading problem formulations

Indexed keywords

ALGORITHMS; DECOMPOSITION; FLOW OF FLUIDS; INTEGER PROGRAMMING; NETWORKS (CIRCUITS); OPTIMIZATION; PROBLEM SOLVING;

EID: 3142695447     PISSN: 15320626     EISSN: None     Source Type: Journal    
DOI: 10.1002/cpe.816     Document Type: Conference Paper
Times cited : (7)

References (14)
  • 2
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    • An efficient computational method for globally optimal threading
    • Xu YS, Xu D, Uberbacher E. An efficient computational method for globally optimal threading. Journal of Computational Biology 1998; 5(3):597-614.
    • (1998) Journal of Computational Biology , vol.5 , Issue.3 , pp. 597-614
    • Xu, Y.S.1    Xu, D.2    Uberbacher, E.3
  • 5
    • 0346967395 scopus 로고    scopus 로고
    • On the approximation of protein threading
    • Akutsu T, Miyano S. On the approximation of protein threading. Theoretical Computer Science 1999; 210:261-275.
    • (1999) Theoretical Computer Science , vol.210 , pp. 261-275
    • Akutsu, T.1    Miyano, S.2
  • 6
    • 0028015988 scopus 로고
    • The protein threading problem with sequence amino acid interaction preferences is NP-complete
    • Lathrop R. The protein threading problem with sequence amino acid interaction preferences is NP-complete. Protein Engineering 1994; 7:1059-1068.
    • (1994) Protein Engineering , vol.7 , pp. 1059-1068
    • Lathrop, R.1
  • 7
    • 0029912991 scopus 로고    scopus 로고
    • Global optimum threading with gapped alignment and empirical pair score functions
    • Lathrop R, Smith T. Global optimum threading with gapped alignment and empirical pair score functions. Journal of Molecular Biology 1996; 255:641-665.
    • (1996) Journal of Molecular Biology , vol.255 , pp. 641-665
    • Lathrop, R.1    Smith, T.2
  • 8
    • 3142722341 scopus 로고    scopus 로고
    • The protein threading problem is in P?
    • [October]
    • Yanev N, Andonov R. The protein threading problem is in P? RR INRIA, No. 4577. http://www.inria.fr/rrrt/rr-4577.html [October 2002].
    • (2002) RR INRIA , vol.4577
    • Yanev, N.1    Andonov, R.2
  • 10
    • 0037731050 scopus 로고    scopus 로고
    • Protein threading by linear programming
    • January
    • Xu J, Li M, Lin G, Kim D, Xu Y. Protein threading by linear programming. PSB, January 2003.
    • (2003) PSB
    • Xu, J.1    Li, M.2    Lin, G.3    Kim, D.4    Xu, Y.5
  • 11
    • 0037118774 scopus 로고    scopus 로고
    • Formulating logical implications in combinatorial optimization
    • Plastria F. Formulating logical implications in combinatorial optimization. EJOR 2002; 140:338-353.
    • (2002) EJOR , vol.140 , pp. 338-353
    • Plastria, F.1
  • 12
    • 3142735527 scopus 로고    scopus 로고
    • Protein threading statistics: An attempt to assess the significance of a fold assignment to a sequence
    • Tsigelny I (ed.). International University Line: La Jolla, CA
    • Marin A, Pothier J, Zimmermann K, Gibrat J-F. Protein threading statistics: An attempt to assess the significance of a fold assignment to a sequence. Protein Structure Prediction: Bioinformatic Approach, Tsigelny I (ed.). International University Line: La Jolla, CA, 2002.
    • (2002) Protein Structure Prediction: Bioinformatic Approach
    • Marin, A.1    Pothier, J.2    Zimmermann, K.3    Gibrat, J.-F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.