Distant HNF1 site as a master control for the human class I alcohol dehydrogenase gene expression

Journal of Biological Chemistry

Volumn 281, Issue 29, 2006, Pages 19809-19821

  Su, Jih Shyun ^a   Tsai, Ting Fen ^a,b   Chang, Hua Mei ^c   Chao, Kun Mao ^d   Su, Tsung Sheng ^a,e   Tsai, Shih Feng ^a,b  

^a NATIONAL YANG MING UNIVERSITY   (Taiwan)

^b NATIONAL HEALTH RESEARCH INSTITUTES   (Taiwan)

^c VITA GENOMICS INC   (Taiwan)

^d NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^e TAIPEI VETERANS GENERAL HOSPITAL   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATION ENERGY; ALCOHOLS; BIOLOGICAL ORGANS; CHROMOSOMES; ENZYME KINETICS; METABOLISM;

ALCOHOL METABOLISM; GENE EXPRESSION; TRANSGENIC LIVERS;

GENETIC ENGINEERING;

ALCOHOL DEHYDROGENASE; ALCOHOL DEHYDROGENASE CLASS 1A; ALCOHOL DEHYDROGENASE CLASS 1B; ALCOHOL DEHYDROGENASE CLASS 1C; ALCOHOL DEHYDROGENASE CLASS 4; DEOXYRIBONUCLEASE; NUCLEAR FACTOR I; UNCLASSIFIED DRUG;

ANIMAL EXPERIMENT; ARTICLE; BINDING SITE; CONTROLLED STUDY; GENE ACTIVATION; GENE CONTROL; GENE DELETION; GENE EXPRESSION; GENE SEQUENCE; HYPERSENSITIVITY; LIVER; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; TRANSCRIPTION INITIATION;

ALCOHOL DEHYDROGENASE; ANIMALS; BASE SEQUENCE; BRAIN; DNA FOOTPRINTING; GENE EXPRESSION REGULATION, ENZYMOLOGIC; HEPATOCYTE NUCLEAR FACTOR 1; HUMANS; LIVER; MICE; MICE, TRANSGENIC; MOLECULAR SEQUENCE DATA; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION;

MUS MUSCULUS;

EID: 33746002959     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M603638200     Document Type: Article

References (40)

1. Edenberg, H. J. (2000) Prog. Nucleic Acids Res. Mol. Biol. 64, 295-341
2. Duester, G., Farres, J., Felder, M. R., Holmes, R. S., Hoog, J. O., Pares, X., Plapp, B. V., Yin, S. J., and Jornvall, H. (1999) Biochem. Pharmacol. 58, 389-395
3. Szalai, G., Duester, G., Friedman, R., Jia, H., Lin, S., Roe, B. A., and Felder, M. R. (2002) Eur. J. Biochem. 269, 224-232
4. Yasunami, M., Kikuchi, I., Sarapata, D., and Yoshida, A. (1990) Genomics 7, 152-158
5. Smith, M., Hopkinson, D. A., and Harris, H. (1971) Ann. Hum. Genet. 34, 251-271
6. Smith, M., Hopkinson, D. A., and Harris, H. (1972) Ann. Hum. Genet. 35, 243-253
7. Smith, M., Hopkinson, D. A., and Harris, H. (1973) Ann. Hum. Genet. 37, 49-67
8. Edenberg, H. J., and Brown, C. J. (1992) Pharmacogenetics 2, 185-196
9. Yang, Z. N., Davis, G. J., Hurley, T. D., Stone, C. L., Li, T. K., and Bosron, W. F. (1994) Alcohol. Clin. Exp. Res. 18, 587-591
10. Yin, S. J., Chou, C. F., Lai, C. L., Lee, S. L., and Han, C. L. (2003) Chem. Biol. Interact. 143-144, 219-227
11. Yin, S. J., Wang, M. F., Liao, C. S., Chen, C. M., and Wu, C. W. (1990) Biochem. Int. 22, 829-835
12. Moreno, A., and Pares, X. (1991) J. Biol. Chem. 266, 1128-1133
13. Duester, G. (1996) Biochemistry 35, 12221-12227
14. Osier, M., Pakstis, A. J., Kidd, J. R., Lee, J. F., Yin, S. J., Ko, H. C., Edenberg, H. J., Lu, R. B., and Kidd, K. K. (1999) Am. J. Hum. Genet. 64, 1147-1157
15. Chen, C. C., Lu, R. B., Chen, Y. C., Wang, M. F., Chang, Y. C., Li, T. K., and Yin, S. J. (1999) Am. J. Hum. Genet. 65, 795-807
16. Brown, C. J., Zhang, L., and Edenberg, H. J. (1996) DNA Cell Biol. 15, 187-196
17. Hardison, R. C. (2000) Trends Genet. 16, 369-372
18. Hogan, B. L., Costantini, F., and Lacy, E. (1986) Manipulating the Mouse Embryo: A Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
19. Shen, H. H., Huang, A. M., Hoheisel, J., and Tsai, S. F. (2001) Genomics 71, 21-33
20. Becker, P., Renkawitz, R., and Schutz, G. (1984) EMBO J. 3, 2015-2020
21. Holloway, M. P., and La Gamma, E. F. (1992) J. Biol. Chem. 267, 19819-19823
22. Shapiro, D. J., Sharp, P. A., Wahli, W. W., and Keller, M. J. (1988) DNA (N. Y.) 7, 47-55
23. Mai, B., Miles, S., and Breeden, L. L. (2002) Mol. Cell. Biol. 22, 430-441
24. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd Ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
25. Gust, B., Challis, G. L., Fowler, K., Kieser, T., and Chater, K. F. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 1541-1546
26. Vakoc, C. R., Letting, D. L., Gheldof, N., Sawado, T., Bender, M. A., Groudine, M., Weiss, M. J., Dekker, J., and Blobel, G. A. (2005) Mol. Cell 17, 453-462
27. Ko, M. S. H. (2001) Trends Biotechnol. 19, 511-518
28. Dekker, J., Rippe, K., Dekker, M., and Kleckner, N. (2002) Science 295, 1306-1311
29. Tolhuis, B., Palstra, R. J., Splinter, E., Grosveld, F., and de Laat, W. (2002) Mol. Cell 10, 1453-1456
30. Dekker, J. (2006) Nat. Methods 3, 17-21
31. Xie, D., Narasimhan, P., Zheng, Y. W., Dewey, M. J., and Felder, M. R. (1996) Gene (Amst.) 181, 173-178
32. Szalai, G., Xie, D., Wassenich, M., Veres, M., Ceci, J. D., Dewey, M. J., Molotkov, A., Duester, G., and Felder, M. R. (2002) Gene (Amst.) 291, 259-270
33. Cereghini, S. (1996) FASEB J. 10, 267-282
34. Pontoglio, M., Faust, D. M., Doyen, A., Yaniv, M., and Weiss, M. C. (1997) Mol. Cell. Biol. 17, 4948-4956
35. Bell, A. C., West, A. G., and Felsenfeld, G. (1999) Cell 98, 387-396
36. Georgopoulos, K., Moore, D. D., and Derfler, B. (1992) Science 258, 808-812
37. Brown, K. E., Guest, S. S., Smale, S. T., Hahm, K., Merkenschlager, M., and Fisher, A. G. (1997) Cell 91, 845-854
38. Osier, M. V., Pakstis, A. J., Soodyall, H., Comas, D., Goldman, D., Odunsi, A., Okonofua, F., Parnas, J., Schulz, L. O., Bertranpetit, J., Bonne-Tamir, B., Lu, R. B., Kidd, J. R., and Kidd, K. K. (2002) Am. J. Hum. Genet. 71, 84-99
39. Osier, M. V., Lu, R. B., Pakstis, A. J., Kidd, J. R., Huang, S. Y., and Kidd, K. K. (2004) Am. J. Med. Genet. B. Neuropsychiatr. Genet. 126, 19-22
40. Schwartz, S., Zhang, Z., Frazer, K. A., Smit, A., Riemer, C., Bouck, J., Gibbs, R., Hardison, R., and Miller, W. (2000) Genome Res. 10, 577-586