Protein separation and characterization by np-RP-HPLC followed by intact MALDI-TOF mass spectrometry and peptide mass mapping analyses

Journal of Proteome Research

Volumn 5, Issue 7, 2006, Pages 1688-1700

  Dauly, Claire ^a   Perlman, David H ^a   Costello, Catherine E ^a   McComb, Mark E ^a  

^a BOSTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Intact protein mass spectrometry; Nonporous reversed phase HPLC; Peptide mass fingerprint; Protein liquid chromatography

Indexed keywords

BETA LACTOGLOBULIN; CATALASE; CYTOCHROME C; FERRITIN; GLUCOSE OXIDASE; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; INSULIN; MYOGLOBIN; TRYPSIN INHIBITOR;

AMINO ACID SEQUENCE; ANIMAL CELL; AORTA; ARTICLE; COW; ENDOTHELIUM CELL; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; INTERMETHOD COMPARISON; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOLECULAR WEIGHT; NON POROUS REVERSED PHASE HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; NONHUMAN; NUCLEOTIDE SEQUENCE; PEPTIDE MAPPING; PEPTIDE MASS FINGERPRINTING; PRIORITY JOURNAL; PROTEIN ANALYSIS; REPRODUCIBILITY; REVERSED PHASE HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; STRUCTURAL PROTEOMICS; ULTRAVIOLET RADIATION;

ANIMALS; AORTA; BLOOD PROTEINS; CATTLE; CELL MEMBRANE; CELLS, CULTURED; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; ENDOTHELIAL CELLS; EVALUATION STUDIES; HORSES; MASS SPECTROMETRY; MOLECULAR WEIGHT; PEPTIDE MAPPING; RABBITS; REFERENCE STANDARDS; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 33745848858     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr060108z     Document Type: Article

References (46)

1. Tyers, M.; Mann, M. Nature 2003, 422, 193-197.
2. Pandey, A.; Mann, M. Nature 2000, 405, 837-846.
3. Abbott, A. Nature 1999, 402, 715-720.
4. Venter, J. C. et al. Adams, M. D.; Myers, E. W.; Li, P. W. et al., Science 2001, 291, 1304-1351.
5. Aebersold, R.; Mann, M. Nature 2003, 422, 198-207.
6. Anderson, N. L.; Anderson, N. G. Mol. Cell. Proteomics 2002, 1, 845-867.
7. Omenn, G. S.; States, D. J.; Adamski, M.; Blackwell, T. W.; Menon, R. et al., Proteomics 2005, 5, 3226-3245.
8. Li, X.; Gong, Y.; Wang, Y.; Wu, S. et al., Proteomics 2005, 5, 3423-3441.
9. Cho, S. Y.; Lee, E. Y.; Lee, J. S.; Kim, H. Y. et al., Proteomics 2005, 5, 3386-3396.
10. Bichsel, V. E.; Liotta, L. A.; Petricoin, E. F., 3rd, Cancer J. 2001, 7, 69-78.
11. Arrell, D. K.; Neverova, I.; Van Eyk, J. E. Circ. Res. 2001, 88, 763-773.
12. Klose, J. Humangenetik 1975, 26, 231-243.
13. O'Farrell, P. H. J. Biol. Chem. 1975, 250, 4007-4021.
14. Scheele, G. A. J. Biol. Chem. 1975, 250, 5375-5385.
15. Hillenkamp, F.; Karas, M.; Beavis, R. C.; Chait, B. T. Anal. Chem. 1991, 63, 1193A-1203A.
16. Hillenkamp, F.; Karas, M. Methods Enzymol. 1990, 193, 280-295.
17. Krause, E.; Wenschuh, H.; Jungblut, P. R. Anal. Chem. 1999, 71, 4160-4165.
18. Neverova, I.; Van Eyk, J. E. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 2005, 815, 51-63.
19. Zurbriggen, K.; Schmugge, M.; Schmid, M.; Durka, S. et al., Clin. Chem. 2005, 51, 989-996.
20. Wu, S.; Tang, X. T.; Siems, W. F.; Bruce, J. E. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 2005, 822, 98-111.
21. Martosella, J.; Zolotarjova, N.; Liu, H.; Nicol, G.; Boyes, B. E. J. Proteome Res. 2005, 4, 1522-1537.
22. Neverova, I.; Van Eyk, J. E. Proteomics 2002, 2, 22-31.
23. Wall, D. B.; Lubman, D. M.; Flynn, S. J. Anal. Chem. 1999, 71, 3894-3900.
24. Maa, Y. F.; Horvath, C. J. Chromatogr. 1988, 445, 71-86.
25. Banks, J. F.; Gulcicek, E. E. Anal. Chem. 1997, 69, 3973-3978.
26. Lee, W. C. J. Chromatogr. B Biomed. Sci. Appl. 1997, 699, 29-45.
27. Itoh, H.; Nimura, N.; Kinoshita, T.; Nagae, N.; Nomura, M. Anal. Biochem. 1991, 199, 7-10.
28. Ottens, A. K.; Kobeissy, F. H.; Wolper, R. A.; Haskins, W. E. et al. Anal. Chem. 2005, 77, 4836-4845.
29. Sheng, S.; Chen, D.; Van Eyk, J. E. Mol. Cell. Proteomics 2005.
30. Chen, E. I.; Hewel, J.; Brunhilde Fdding-Habermann, B. Yates, J. R., 3rd, Mol. Cell Proteomics 2005.
31. Billecke, C.; Malik, I.; Movsisyan, A.; Sulghani, S. et al., Mol. Cell. Proteomics 2005.
32. Opiteck, G. J.; Ramirez, S. M.; Jorgenson, J. W.; Moseley, M. A., 3rd, Anal Biochem. 1998, 258, 349-361.
33. Meng, F.; Cargile, B. J.; Patrie, S. M.; Johnson, J. R. et al. Anal. Chem. 2002, 74, 2923-2929.
34. Fujii, K.; Nakano, T.; Kawamura, T.; Usui, F. et al., J. Proteome Res. 2004, 3, 712-718.
35. Coldham, N. G.; Woodward, M. J. J. Proteome Res. 2004, 3, 595-603.
36. Jilge, G.; Janzen, R.; Giesche, H.; Uriger, K. K. et al., J. Chromatogr. 1987, 397, 71-80.
37. Janzen, R.; Unger, K. K.; Giesche, H.; Kinkel, J. N.; Hearn, M. T. J. Chromatogr. 1987, 397, 81-89.
38. Janzen, R.; Unger, K. K.; Giesche, H.; Kinkel, J. N.; Hearn, M. T. J. Chromatogr. 1987, 397, 91-97.
39. O'Neil, K. A.; Miller, F. R.; Barder, T. J.; Lubman, D. M. Proteomics 2003, 3, 1256-1269.
40. Chen, Y.; Wall, D.; Lubman, D. M. Rapid Commun. Mass Spectrom. 1998, 12, 1994-2003.
41. Snyder, L. R.; Kirkland, J. J. Introduction to Modern Liquid Chromatography, Wiley: New York, 1979; pp. xix, 863.
42. Brogle, K.; Ornaf, R. M.; Wu, D.; Palermo, P. J. J. Pharm. Biomed. Anal. 1999, 19, 669-678.
43. Retamal, C. A.; Thiebaut, P.; Alves, E. W. Anal. Biochem. 1999, 268, 15-20.
44. Jin, Y.; Manabe, T. Electrophoresis 2005, 26, 2823-2834.
45. Ketis, N. V.; Hoover, R. L.; Karnovsky, M. J. J. Cell. Physiol. 1986, 128, 162-170.
46. Watson, K.; Edwards, R. J.; Shaunak, S.; Parmelee, D. C. et al., Biochem. Pharmacol. 1995, 50, 299-309.