Quantum mechanical studies on the crystallographic model of bathorhodopsin

Angewandte Chemie - International Edition

Volumn 45, Issue 26, 2006, Pages 4274-4277

  Schreiber, Marko ^a   Sugihara, Minoru ^a   Okada, Tetsuji ^b   Buss, Volker ^a  

^a UNIVERSITY OF DUISBURG ESSEN   (Germany)

^b NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

Author keywords

Density functional calculations; Protein structures; Retinal; Rhodopsin; UV Vis spectroscopy

Indexed keywords

DENSITY FUNCTIONAL CALCULATIONS; PROTEIN STRUCTURES; RETINAL; RHODOPSIN; UV/VIS SPECTROSCOPY;

CHROMOPHORES; GEOMETRY; QUANTUM THEORY; X RAY CRYSTALLOGRAPHY;

CRYSTALLOGRAPHY;

BATHORHODOPSIN; RHODOPSIN;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; CRYSTALLIZATION; PROTEIN TERTIARY STRUCTURE; VIBRATION;

CRYSTALLIZATION; MODELS, MOLECULAR; PROTEIN STRUCTURE, TERTIARY; RHODOPSIN; VIBRATION;

EID: 33745768748     PISSN: 14337851     EISSN: None     Source Type: Journal    
DOI: 10.1002/anie.200600585     Document Type: Article

References (23)

1. "Structure and Mechanism of Vertebrate Visual Pigments": W. J. DeGrip, K. J. Rothschild in Handbook of Biological Physics, Vol. 3 (Eds.: D. G. Stavenga, W. J. DeGrip, E. N. Pugh, Jr.), Elsevier Science Press, Amsterdam, 2000, pp 1-54.
2. T. Okada, O. P. Ernst, K. Palczewski, K. P. Hofmann, Trends Biochem. Sci. 2001, 26, 2759-2767.
3. H. Nakamichi, T. Okada, Angew. Chem., DOI: 10.1002/ange.200600595/
4. Angew. Chem. Int. Ed., DOI: 10.1002/anie.200600595.
5. U. Ryde, K. Nilsson, J. Am. Chem. Soc. 2003, 125, 14 232-14 233.
6. M. Elstner, D. Porezag, G. Jungnickel, J. Elsner, M. Haugk, T. Frauenheim, S. Suhai, G. Seifert, Phys. Rev. B 1998, 58, 7260-7268.
7. K. Andersson, P-A. Malmqvist, B. O. Roos, A. J. Sadley, K. Wolinski, J. Phys. Chem. 1990, 94, 5483-5488.
8. T. Okada, M. Sugihara, A. N. Bondar, M. Elstner, P. Entel, V. Buss, J. Mol. Biol. 2004, 342, 571-581.
9. M. Sugihara, V. Buss, P. Entel, M. Elstner, T. Frauenheim, Biochemistry 2002, 41, 15259-15266.
10. E. C. Y. Yan, Z. Ganim, M. A. Kazmi, B. S. W. Chang, T. P. Sakmar, R. A. Mathies, Biochemistry 2004, 43, 10867-10876.
11. J. A. Gascon, V. S. Batista, Biophys. J. 2004, 87, 2931-2941.
12. U. F. Röhrig, L. Guidoni, A. Laio, I. Frank, U. Rothlisberger, J. Am. Chem. Soc. 2004, 126, 15 328-15 329.
13. T. Andruniow, N. Ferre, M. Olivucci, Proc. Natl. Acad. Sci. USA 2004, 101, 17 908-17 913.
14. I. Palings, E. M. M. van den Berg, J. Lugtenburg, R. A. Mathies, Biochemistry 1989, 28, 1498-1507.
15. A. Warshel, Nature 1976, 260, 679-683.
16. O. Weingart, unpublished results.
17. M. Sugihara, J. Hufen, V. Buss, Biochemistry 2006, 45, 801-810.
18. A. Cooper, Nature 1979, 282, 531-533.
19. M. Schreiber, V. Buss, Int. J. Quantum Chem. 2003, 95, 882-889.
20. L. H. Andersen, I. B. Nielsen, M. B. Kristensen, M. O. A. El Ghazaly, S. Haake, M. Brondsted Nielsen, M. A. Petersen, J. Am. Chem. Soc. 2005, 127, 12 347-12 350.
21. S. Sekharan, O. Weingart, V. Buss, Biophys. J., DOI: 10.1529/biophysj. 106.087122.
22. S. Horiuchi, F. Tokunaga, T. Yoshizawa, Biochim. Biophys. Acta 1980, 591, 445-457.
23. K. Pierloot, B. Dumez, P. O. Widmark, B. O. Roos, Theor. Chim. Acta 1995, 90, 87-114.