Rapid and high-throughput forensic short tandem repeat typing using a 96-lane microfabricated capillary array electrophoresis microdevice

Journal of Forensic Sciences

Volumn 51, Issue 4, 2006, Pages 740-747

  Yeung, Stephanie H I ^a   Greenspoon, Susan A ^b   McGuckian, Amy ^c   Crouse, Cecelia A ^c   Emrich, Charles A ^a   Ban, Jeffrey ^b   Mathies, Richard A ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b DNA Unit   (United States)

^c Palm Beach County Sheriff's Office   (United States)

Author keywords

AmpF STR ; Capillary array electrophoresis; Capillary electrophoresis; Forensic identification; Forensic science; Microfabrication; PowerPlex; Profiler Plus ; Short tandem repeat typing

Indexed keywords

GENOMIC DNA;

ARTICLE; BLOOD STAIN; CAPILLARY ELECTROPHORESIS; CONFOCAL LASER MICROSCOPY; CONTROLLED STUDY; DEVICE; FEMALE; FORENSIC IDENTIFICATION; GENE AMPLIFICATION; HIGH THROUGHPUT SCREENING; HOMICIDE; HUMAN; HUMAN TISSUE; MALE; MICROFABRICATED CAPILLARY ARRAY ELECTROPHORESIS; MULTIPLEX POLYMERASE CHAIN REACTION; PATERNITY TEST; PRIORITY JOURNAL; SALIVA ANALYSIS; SEMEN ANALYSIS; SEXUAL CRIME; SHORT TANDEM REPEAT; SIGNAL NOISE RATIO; STAIN;

ALLELES; DNA FINGERPRINTING; ELECTROPHORESIS, CAPILLARY; FEMALE; GENETIC MARKERS; HUMANS; MALE; MINIATURIZATION; POLYMERASE CHAIN REACTION; TANDEM REPEAT SEQUENCES;

EID: 33745754510     PISSN: 00221198     EISSN: 15564029     Source Type: Journal    
DOI: 10.1111/j.1556-4029.2006.00153.x     Document Type: Article

References (30)

1. Hammond HA, Jin L, Zhong Y, Caskey CT, Chakraborty R. Evaluation of 13 short tandem repeat loci for use in personal identification applications. Am J Hum Genet 1994;55:175-89.
2. Andersen JF, Greenhalgh MJ, Butler HR, Kilpatrick SR, Piercy RC, Way KA, et al. Further validation of a multiplex STR system for use in routine forensic identity testing. Forensic Sci Int 1996;78:47-64.
3. Chakraborty R, Stivers DN, Su B, Zhong YX, Budowle B. The utility of short tandem repeat loci beyond human identification: implications for development of new DNA typing systems. Electrophoresis 1999;20:1682-96.
4. Butler JM. Forensic STR typing: biology, technology and genetics of STR markers. 2nd ed. New York: Elsevier; 2005.
5. Woolley AT, Sensabaugh GF, Mathies RA. High-speed DNA genotyping using microfabricated capillary array electrophoresis chips. Anal Chem 1997;69:2181-6.
6. Goedecke N, McKenna B, El-Difrawy S, Carey L, Matsudaira P, Ehrlich D. A high-performance multilane microdevice system designed for the DNA forensics laboratory. Electrophoresis 2004;25:1678-86.
7. Simpson PC, Roach D, Woolley AT, Thorsen T, Johnston R, Sensabaugh GF, et al. High-throughput genetic analysis using microfabricated 96-sample capillary array electrophoresis microplates. Proc Natl Acad Sci USA 1998;95:2256-61.
8. Paegel BM, Emrich CA, Weyemayer GJ, Scherer JR, Mathies RA. High throughput DNA sequencing with a microfabricated 96-lane capillary array electrophoresis bioprocessor. Proc Natl Acad Sci USA 2002;99:574-9.
9. Medintz IL, Berti L, Emrich CA, Tom J, Scherer JR, Mathies RA. Genotyping energy-transfer-cassette-labeled short-tandem-repeat amplicons with capillary array electrophoresis microchannel plates. Clin Chem 2001;47:1614-21.
10. Emrich CA, Tian HJ, Medintz IL, Mathies RA. Microfabricated 384-lane capillary array electrophoresis bioanalyzer for ultrahigh-throughput genetic analysis. Anal Chem 2002;74:5076-83.
11. Burns MA, Johnson BN, Brahmasandra SN, Handique K, Webster JR, Krishnan M, et al. An integrated nanoliter DNA analysis device. Science 1998;282:484-7.
12. Lagally ET, Simpson PC, Mathies RA. Monolithic integrated microfluidic DNA amplification and capillary electrophoresis analysis system. Sensors Actuator B-Chem 2000;63:138-46.
13. Roper MG, Easley CJ, Landers JP. Advances in polymerase chain reaction on microfluidic chips. Anal Chem 2005;77:3887-94.
14. Wolfe KA, Breadmore MC, Ferrance JP, Power ME, Conroy JF, Norris PM, et al. Toward a microchip-based solid-phase extraction method for isolation of nucleic acids. Electrophoresis 2002;23:727-33.
15. Paegel BM, Yeung SHI, Mathies RA. Microchip bioprocessor for integrated nanovolume sample purification and DNA sequencing. Anal Chem 2002;74:5092-8.
16. Applied Biosystems. AmpFℓSTR® Profiler Plus® PCR amplification kit user's manual. Foster City, CA: Applied Biosystems; 2000.
17. Promega Corporation. PowerPlex® 16 System technical manual No. D012. Madison, WI: Promega; 2002.
18. Krenke BE, Tereba A, Anderson SJ, Buel E, Culhane S, Finis CJ, et al. Validation of a 16-locus fluorescent multiplex system. J Forensic Sci 2002;47:773-85.
19. Simpson PC, Wolley AT, Mathies RA. Microfabrication technology for the reduction of capillary array electrophoresis chip. Biomed Microdevices 1998;1:7-26.
20. Hjerten S. High-performance electrophoresis - elimination of electroendosmosis and solute adsorption. J Chromatogr 1985;347:191-8.
21. Scherer JR, Paegel BM, Wedemayer GJ, Emrich CA, Lo J, Medintz IL, et al. High-pressure gel loader for capillary array electrophoresis microchannel plates. Biotechniques 2001;31:1150-4.
22. Shi YN, Simpson PC, Scherer JR, Wexler D, Skibola C, Smith MT, et al. Radial capillary array electrophoresis microplate and scanner for high-performance nucleic acid analysis. Anal Chem 1999;71:5354-61.
23. Paegel BM, Hutt LD, Simpson PC, Mathies RA. Turn geometry for minimizing band broadening in microfabricated capillary electrophoresis channels. Anal Chem 2000;72:3030-7.
24. Buel E, LaFountain M, Schwartz M, Walkinshaw M. Evaluation of capillary electrophoresis performance through resolution measurements. J Forensic Sci 2001;46:341-5.
25. http://www.cstl.nist.gov/biotech/strbase
26. http://www.cchem.berkeley.edu/ramgrp/str_sup
27. Kline MC, Duewer DL, Redman JW, Butler JM. NIST mixed stain study 3: DNA quantitation accuracy and its influence on short tandem repeat multiplex signal intensity. Anal Chem 2003;75:2463-9.
28. Paegel BM, Blazej RG, Mathies RA. Microfluidic devices for DNA sequencing: sample preparation and electrophoretic analysis. Curr Opin Biotechnol 2003;14:42-50.
29. Lagally ET, Scherer JR, Blazej RG, Toriello NM, Diep BA, Ramchandani M, et al. Integrated portable genetic analysis microsystem for pathogen/infectious disease detection. Anal Chem 2004;76:3162-70.
30. Skelley AM, Scherer JR, Aubrey AD, Grover WH, Ivester RHC, Ehrenfreund P, et al. Development and evaluation of a microdevice for amino acid biomarker detection and analysis on Mars. Proc Natl Acad Sci USA 2005;102:1041-6.