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Volumn 4, Issue 2, 2006, Pages 171-196

A hybrid gene team model and its application to genome analysis

Author keywords

Cog team; Gene cluster; Gene team; Hybrid model; Proximity constraint

Indexed keywords

BACTERIAL GENETICS; BACTERIAL GENOME; CONFERENCE PAPER; ESCHERICHIA COLI K 12; GENE CLUSTER; GENE SEQUENCE; GENETIC ALGORITHM; GENETIC ANALYSIS; GENETIC MODEL; HAEMOPHILUS INFLUENZAE; LACTOCOCCUS LACTIS; MATHEMATICAL COMPUTING; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPERON; PHYLOGENY; PREDICTION; REPLICON; SEQUENCE ANALYSIS;

EID: 33745726581     PISSN: 02197200     EISSN: None     Source Type: Journal    
DOI: 10.1142/S0219720006001850     Document Type: Conference Paper
Times cited : (10)

References (23)
  • 1
    • 0001882616 scopus 로고
    • Fast algorithms for mining association rules
    • Bocca JB, Jarke M, Zaniolo C (eds.), Morgan Kaufmann 12-15
    • Agrawal R, Srikant R, Fast algorithms for mining association rules, in Bocca JB, Jarke M, Zaniolo C (eds.), Proc 20th Int Conf Very Large Data Bases, pp. 487-499, Morgan Kaufmann, 12-15, 1994.
    • (1994) Proc 20th Int Conf Very Large Data Bases , pp. 487-499
    • Agrawal, R.1    Srikant, R.2
  • 2
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul SF, Madden TL, Zhang J et al., Gapped BLAST and PSI-BLAST: A new generation of protein database search programs, Nucleic Acids Res 25(17):3389-3402, 1997.
    • (1997) Nucleic Acids Res , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Zhang, J.3
  • 3
    • 84957010453 scopus 로고    scopus 로고
    • The algorithmic of gene teams
    • Lecture Notes in Computer Science Guigó R, Gusfield D (eds.), Rome, Italy, Springer-Verlag, Berlin
    • Bergeron A, Corteel S, Raffinot M, The algorithmic of gene teams, in Guigó R, Gusfield D (eds.), Proc 2nd Workshop Bioinformatics, Lecture Notes in Computer Science, no. 2452 in pp. 464-476, Rome, Italy, 2002. Springer-Verlag, Berlin.
    • (2002) Proc 2nd Workshop Bioinformatics , vol.2452 , pp. 464-476
    • Bergeron, A.1    Corteel, S.2    Raffinot, M.3
  • 4
    • 0034525575 scopus 로고    scopus 로고
    • PhyloDRAW: A phylogenetic tree drawing system
    • Choi J-H, Jung H-Y, Kim H-S, Cho H-G, PhyloDRAW: A phylogenetic tree drawing system, Bioinformatics 16(11):1056-1058, 2000.
    • (2000) Bioinformatics , vol.16 , Issue.11 , pp. 1056-1058
    • Choi, J.-H.1    Jung, H.-Y.2    Kim, H.-S.3    Cho, H.-G.4
  • 5
    • 19544362579 scopus 로고    scopus 로고
    • PLATCOM: A platform for computational comparative genomics
    • Choi K, Ma Y, Choi J-H, Kim S, PLATCOM: A platform for computational comparative genomics, Bioinformatics 21(10):2514-2516, 2005.
    • (2005) Bioinformatics , vol.21 , Issue.10 , pp. 2514-2516
    • Choi, K.1    Ma, Y.2    Choi, J.-H.3    Kim, S.4
  • 7
    • 0033523989 scopus 로고    scopus 로고
    • Protein interaction maps for complete genomes based on gene fusion events
    • Enright AJ, Iliopoulos I, Kyrpides NC, Christos AO, Protein interaction maps for complete genomes based on gene fusion events, Nature 402(6757):86-90, 1999.
    • (1999) Nature , vol.402 , Issue.6757 , pp. 86-90
    • Enright, A.J.1    Iliopoulos, I.2    Kyrpides, N.C.3    Christos, A.O.4
  • 9
    • 0032080594 scopus 로고    scopus 로고
    • The Bacillus subtilis glpD leader and antiterminator protein glpP provide a target for glucose repression in Escherichia coli
    • Glate E, Farewell A, Rutberg B, The Bacillus subtilis glpD leader and antiterminator protein glpP provide a target for glucose repression in Escherichia coli, FEMS Microbiol Lett 162(1):93-96, 1998.
    • (1998) FEMS Microbiol Lett , vol.162 , Issue.1 , pp. 93-96
    • Glate, E.1    Farewell, A.2    Rutberg, B.3
  • 10
    • 0032627945 scopus 로고    scopus 로고
    • Efficient mining of partial periodic patterns in time series database
    • IEEE Computer Society Sydney, Australia
    • Han J, Dong G, Yin Y, Efficient mining of partial periodic patterns in time series database, Proc Fifteenth Int Conf Data Engineer, IEEE Computer Society, pp. 106-115, Sydney, Australia, 1999.
    • (1999) Proc Fifteenth Int Conf Data Engineer , pp. 106-115
    • Han, J.1    Dong, G.2    Yin, Y.3
  • 11
    • 2442610750 scopus 로고    scopus 로고
    • Identifying conserved gene clusters in the presence of orthologous groups
    • ACM Press
    • He X, Goldwasser MH, Identifying conserved gene clusters in the presence of orthologous groups, Proc 8th Annu Int Conf Comput Mol Biol, ACM Press, 2004, pp. 272-280.
    • (2004) Proc 8th Annu Int Conf Comput Mol Biol , pp. 272-280
    • He, X.1    Goldwasser, M.H.2
  • 12
    • 0033058895 scopus 로고    scopus 로고
    • Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes
    • Itoh T, Takemoto K, Mori H, Gojobori T, Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes, Mol Biol Evol 16(3):332-346, 1999.
    • (1999) Mol Biol Evol , vol.16 , Issue.3 , pp. 332-346
    • Itoh, T.1    Takemoto, K.2    Mori, H.3    Gojobori, T.4
  • 13
    • 13444262374 scopus 로고    scopus 로고
    • EcoCyc: A comprehensive database resource for Escherichia coli
    • Keseler IM, Collado-Vides J, Gama-Castro S et al., EcoCyc: A comprehensive database resource for Escherichia coli. Nucleic Acids Res 33(Suppl 1):D334-D337, 2005.
    • (2005) Nucleic Acids Res , vol.33 , Issue.SUPPL. 1
    • Keseler, I.M.1    Collado-Vides, J.2    Gama-Castro, S.3
  • 14
    • 0033618555 scopus 로고    scopus 로고
    • Detecting protein function and protein-protein interactions from genome sequences
    • Marcotte EM, Pellegrini M, Ng H-L et al., Detecting protein function and protein-protein interactions from genome sequences, Science 285(5428):751-753, 1999.
    • (1999) Science , vol.285 , Issue.5428 , pp. 751-753
    • Marcotte, E.M.1    Pellegrini, M.2    Ng, H.-L.3
  • 16
    • 0033055062 scopus 로고    scopus 로고
    • The use of gene clusters to infer functional coupling
    • Overbeek R, Fonstein M, D'Souza M et al., The use of gene clusters to infer functional coupling, Proc Natl Acad Sci USA 96(6):2896-2901, 1999.
    • (1999) Proc Natl Acad Sci USA , vol.96 , Issue.6 , pp. 2896-2901
    • Overbeek, R.1    Fonstein, M.2    D'Souza, M.3
  • 17
    • 0028260495 scopus 로고
    • The dacF-spoIIA operon of Bacillus subtilis, encoding sigma f, is autoregulated
    • Schuch R and Piggot PJ, The dacF-spoIIA operon of Bacillus subtilis, encoding sigma f, is autoregulated, J Bacteriol 176(13):4104-4110, 1994.
    • (1994) J Bacteriol , vol.176 , Issue.13 , pp. 4104-4110
    • Schuch, R.1    Piggot, P.J.2
  • 18
    • 0032900532 scopus 로고    scopus 로고
    • Genome phylogeny based on gene content
    • Snel B, Bork P, Huynen MA, Genome phylogeny based on gene content, Nat Genet 21(1):66-67, 1999.
    • (1999) Nat Genet , vol.21 , Issue.1 , pp. 66-67
    • Snel, B.1    Bork, P.2    Huynen, M.A.3
  • 20
    • 0010414313 scopus 로고    scopus 로고
    • Evolution of gene order conservation in prokaryotes
    • research0020.1-research0020.11
    • Tamames J, Evolution of gene order conservation in prokaryotes, Genome Biol 2(6):rEsearch0020.1-research0020.11, 2001.
    • (2001) Genome Biol , vol.2 , Issue.6
    • Tamames, J.1
  • 21
    • 0042902833 scopus 로고    scopus 로고
    • The COG database: An updated version includes eukaryotes
    • Tatusov R, Fedorova N, Jackson J et al., The COG database: An updated version includes eukaryotes, BMC Bioinformatics 4(1):41, 2003.
    • (2003) BMC Bioinformatics , vol.4 , Issue.1 , pp. 41
    • Tatusov, R.1    Fedorova, N.2    Jackson, J.3
  • 22
    • 0031665131 scopus 로고    scopus 로고
    • Bacillus subtilis genes for the utilization of sulfur from aliphatic sulfonates
    • van der Ploeg JR, Cummings NJ, Leisinger T, Connerton IF, Bacillus subtilis genes for the utilization of sulfur from aliphatic sulfonates, Microlool 144(9):2555-2561, 1998.
    • (1998) Microlool , vol.144 , Issue.9 , pp. 2555-2561
    • van der Ploeg, J.R.1    Cummings, N.J.2    Leisinger, T.3    Connerton, I.F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.