메뉴 건너뛰기




Volumn 4, Issue 2, 2006, Pages 537-551

Comparison of statistical significance criteria

Author keywords

Gaussian approximation; P value; Transcription factor binding sites; Z score

Indexed keywords

ACCURACY; BIOINFORMATICS; CONFERENCE PAPER; CONTROLLED STUDY; INTERMETHOD COMPARISON; MATHEMATICAL COMPUTING; NORMAL DISTRIBUTION; PRACTICE GUIDELINE; SCORING SYSTEM; SENSITIVITY AND SPECIFICITY; STATISTICAL SIGNIFICANCE;

EID: 33745698575     PISSN: 02197200     EISSN: None     Source Type: Journal    
DOI: 10.1142/S0219720006002028     Document Type: Conference Paper
Times cited : (17)

References (28)
  • 1
    • 0032549745 scopus 로고    scopus 로고
    • Genomic cis-regulatory logic: Functional analysis and computational model of a sea urchin gene control system
    • Yuh C, Bolouri H, Davidson EH, Genomic cis-regulatory logic: Functional analysis and computational model of a sea urchin gene control system, Science 279:1896-1902, 1998.
    • (1998) Science , vol.279 , pp. 1896-1902
    • Yuh, C.1    Bolouri, H.2    Davidson, E.H.3
  • 2
    • 21144439147 scopus 로고    scopus 로고
    • An assessment of computational tools for the discovery of transcription factor binding sites
    • Tompa M, Li N, Bailey TL, et al., An assessment of computational tools for the discovery of transcription factor binding sites, Nature Biotechnology 23(1):137-144, 2005.
    • (2005) Nature Biotechnology , vol.23 , Issue.1 , pp. 137-144
    • Tompa, M.1    Li, N.2    Bailey, T.L.3
  • 3
    • 26444584579 scopus 로고    scopus 로고
    • Limitations and potentials of current motif discovery algorithm
    • Hu J, Li B, Kihara D, Limitations and potentials of current motif discovery algorithm, Nucleic Acids Res 33:4899-4913, 2005.
    • (2005) Nucleic Acids Res , vol.33 , pp. 4899-4913
    • Hu, J.1    Li, B.2    Kihara, D.3
  • 4
    • 0037208166 scopus 로고    scopus 로고
    • Transfac: Transcriptional regulation, from patterns to profiles
    • Matys V, Fricke E, Geffers, R, et al., Transfac: Transcriptional regulation, from patterns to profiles, Nucleic Acids Res 1(31):374-378, 2003.
    • (2003) Nucleic Acids Res , vol.1 , Issue.31 , pp. 374-378
    • Matys, V.1    Fricke, E.2    Geffers, R.3
  • 5
    • 38249001373 scopus 로고
    • The distribution of subwords counts is usually normal
    • Bender EA, Kochman F, The distribution of subwords counts is usually normal, Eur J Combinatorics 14:265-275, 1993.
    • (1993) Eur J Combinatorics , vol.14 , pp. 265-275
    • Bender, E.A.1    Kochman, F.2
  • 6
    • 0000375303 scopus 로고
    • Finding words with unexpected frequencies in DNA sequences
    • Prum B, Rodolphe F, de Turckheim E, Finding words with unexpected frequencies in DNA sequences, J R Statist Soc B 57:205-220, 1995.
    • (1995) J R Statist Soc B , vol.57 , pp. 205-220
    • Prum, B.1    Rodolphe, F.2    de Turckheim, E.3
  • 7
    • 0001194726 scopus 로고    scopus 로고
    • On pattern frequency occurrences in a markovian sequence
    • preliminary draft at ISIT'97
    • Régnier M, Szpankowski W, On pattern frequency occurrences in a markovian sequence, Algorithmica 22(4):631-649, 1997; preliminary draft at ISIT'97.
    • (1997) Algorithmica , vol.22 , Issue.4 , pp. 631-649
    • Régnier, M.1    Szpankowski, W.2
  • 8
    • 0037190356 scopus 로고    scopus 로고
    • Motif statistics
    • extended version of an article published in the Proc 7th Annu Eur Symp Algorithms ESA'99, Prague, July 1999
    • Nicodème P, Salvy B, Flajolet P, Motif statistics, Theor Comput Sci 287(2):593-618, 2002; extended version of an article published in the Proc 7th Annu Eur Symp Algorithms ESA'99, Prague, July 1999.
    • (2002) Theor Comput Sci , vol.287 , Issue.2 , pp. 593-618
    • Nicodème, P.1    Salvy, B.2    Flajolet, P.3
  • 9
    • 0030913433 scopus 로고    scopus 로고
    • Central limit theorem for renewal theory for several patterns
    • Tanushev MS, Arratia R, Central limit theorem for renewal theory for several patterns, Computational Biol 4(1):35-44, 1997.
    • (1997) Computational Biol , vol.4 , Issue.1 , pp. 35-44
    • Tanushev, M.S.1    Arratia, R.2
  • 10
    • 0024514063 scopus 로고
    • Linguistic of nucleotide sequences: The significance of deviations from the mean: Statistical characteristics and prediction of the frequency of occurrences of words
    • Pevzner PA, Borodovski M, Mironov A, Linguistic of nucleotide sequences: the significance of deviations from the mean: Statistical characteristics and prediction of the frequency of occurrences of words, J Biomol Struct Dyn 6:1013-1026, 1989.
    • (1989) J Biomol Struct Dyn , vol.6 , pp. 1013-1026
    • Pevzner, P.A.1    Borodovski, M.2    Mironov, A.3
  • 11
    • 0000794292 scopus 로고    scopus 로고
    • A unified approach to word occurrences probabilities
    • special issue on Computational Biology;preliminary version at RECOMB'98
    • Régnier M, A unified approach to word occurrences probabilities, Discrete Applied Mathematics 104(1): 259-280, 2000; special issue on Computational Biology;preliminary version at RECOMB'98.
    • (2000) Discrete Applied Mathematics , vol.104 , Issue.1 , pp. 259-280
    • Régnier, M.1
  • 13
    • 0036997774 scopus 로고    scopus 로고
    • Occurrence probability of structured motifs in random sequences
    • Robin S, Daudin JJ, Richard H, et al., Occurrence probability of structured motifs in random sequences, Computational Biol 9:761-773, 2001.
    • (2001) Computational Biol , vol.9 , pp. 761-773
    • Robin, S.1    Daudin, J.J.2    Richard, H.3
  • 14
    • 26444564686 scopus 로고    scopus 로고
    • Assessing the significance of Sets of Words
    • Jeju Island, Korea, Lecture Notes Computer Science, Springer-Verlag
    • Boeva V, Clément J, Régnier M, Vandenbogaert M, Assessing the significance of Sets of Words in Proc. CPM'05, Jeju Island, Korea, Vol. 3537, pp. 358-370, Lecture Notes Computer Science, Springer-Verlag, 2005.
    • (2005) Proc. CPM 2005 , vol.3537 , pp. 358-370
    • Boeva, V.1    Clément, J.2    Régnier, M.3    Vandenbogaert, M.4
  • 15
    • 0004157169 scopus 로고    scopus 로고
    • Cambridge Mathematical Librar, Reading, Mass
    • Lothaire, Combinatorics on Words, Cambridge Mathematical Librar, Reading, Mass., 2005.
    • (2005) Combinatorics on Words
    • Lothaire1
  • 16
    • 28444456845 scopus 로고    scopus 로고
    • Rare events and conditional events on random strings
    • Régnier M, Denise A, Rare events and conditional events on random strings, DMTCS 6(2):191-214, 2004.
    • (2004) DMTCS , vol.6 , Issue.2 , pp. 191-214
    • Régnier, M.1    Denise, A.2
  • 17
    • 21444446007 scopus 로고    scopus 로고
    • S-spatt: Simple statistics for patterns on markov chains
    • Nuel G, S-spatt: Simple statistics for patterns on markov chains, Bioinformatics 21(13):3051-3052, 2005.
    • (2005) Bioinformatics , vol.21 , Issue.13 , pp. 3051-3052
    • Nuel, G.1
  • 18
    • 2342647392 scopus 로고    scopus 로고
    • Statistical analysis of overrepresented words in human promoter sequences
    • Marino-Ramirez L, Spouge JL, Kanga GC, Landsman D, Statistical analysis of overrepresented words in human promoter sequences, Nucleic Acids Res 32(3):949-958, 2004.
    • (2004) Nucleic Acids Res , vol.32 , Issue.3 , pp. 949-958
    • Marino-Ramirez, L.1    Spouge, J.L.2    Kanga, G.C.3    Landsman, D.4
  • 19
    • 0036677820 scopus 로고    scopus 로고
    • Computational identification of putative programmed translational frameshift sites in protein-encoding nucleotide sequences
    • 1046-1053267
    • Shah AS, Giddings MC, Parvaz JB, et al., Computational identification of putative programmed translational frameshift sites in protein-encoding nucleotide sequences, Bioinformatics 18(8):1046-1053267, 2002.
    • (2002) Bioinformatics , vol.18 , Issue.8
    • Shah, A.S.1    Giddings, M.C.2    Parvaz, J.B.3
  • 20
    • 33745681821 scopus 로고    scopus 로고
    • Algorithmes et mesures statistiques pour la recherche de signaux fonctionnels dans les zones de régulation
    • Thèse de doctorat,Université de Bordeaux
    • Vandenbogaert M, Algorithmes et mesures statistiques pour la recherche de signaux fonctionnels dans les zones de régulation, Thèse de doctorat,Université de Bordeaux, 2004.
    • (2004)
    • Vandenbogaert, M.1
  • 21
    • 0034786443 scopus 로고    scopus 로고
    • Numerical comparison of several approximations on the word count distribution in random sequences
    • Robin S, Schbath S, Numerical comparison of several approximations on the word count distribution in random sequences, Computational Biol 8(4):349-359, 2001.
    • (2001) Computational Biol , vol.8 , Issue.4 , pp. 349-359
    • Robin, S.1    Schbath, S.2
  • 23
    • 0033631883 scopus 로고    scopus 로고
    • Detecting localized repeats in genomic sequences: A new strategy and its application to B. subtilis and A. thaliana sequences
    • Klaerr-Blanchard M, Chiapello H, Coward E, Detecting localized repeats in genomic sequences: A new strategy and its application to B. subtilis and A. thaliana sequences, Comput Chem 24(1):57-70, 2000.
    • (2000) Comput Chem , vol.24 , Issue.1 , pp. 57-70
    • Klaerr-Blanchard, M.1    Chiapello, H.2    Coward, E.3
  • 24
    • 0033238297 scopus 로고    scopus 로고
    • Exact distribution of word occurrences in a random sequence of letters
    • Robin S, Daudin JJ, Exact distribution of word occurrences in a random sequence of letters, J Appl Prob 36:179-193, 1999.
    • (1999) J Appl Prob , vol.36 , pp. 179-193
    • Robin, S.1    Daudin, J.J.2
  • 26
    • 84959049129 scopus 로고    scopus 로고
    • Assessing statistical significance of overrepresented oligonucleotides
    • Aarhus, Denmark, Springer-Verlag
    • Denise A, Régnier M, Vandenbogaert M, Assessing statistical significance of overrepresented oligonucleotides, in, Workshop Algorithms Bioinformatics, Aarhus, Denmark, Springer-Verlag, pp. 85-97, 2001.
    • (2001) Workshop Algorithms Bioinformatics , pp. 85-97
    • Denise, A.1    Régnier, M.2    Vandenbogaert, M.3
  • 27
    • 0033858202 scopus 로고    scopus 로고
    • Patterns of variant polyadenylation signal usage in human genes
    • Beaudoing E, Freier S, Wyatt J, et al., Patterns of variant polyadenylation signal usage in human genes, Genome Res 10:1001-1010, 2000.
    • (2000) Genome Res , vol.10 , pp. 1001-1010
    • Beaudoing, E.1    Freier, S.2    Wyatt, J.3
  • 28
    • 0034731822 scopus 로고    scopus 로고
    • A web site for the computational analysis of yeast regulatory sequences
    • van Helden J, Andre B, Collado-Vides J, A web site for the computational analysis of yeast regulatory sequences, Yeast 16:177-187, 2000.
    • (2000) Yeast , vol.16 , pp. 177-187
    • van Helden, J.1    Andre, B.2    Collado-Vides, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.