S-SPatt: Simple statistics for patterns on Markov chains

Bioinformatics

Volumn 21, Issue 13, 2005, Pages 3051-3052

  Nuel, Grégory ^a  

^a University of Paris 5   (France)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ALGORITHM; ANALYTICAL ERROR; ARTICLE; BINOMIAL DISTRIBUTION; COMPUTER PROGRAM; CONTROLLED STUDY; DNA DETERMINATION; ESCHERICHIA COLI K 12; INTERMETHOD COMPARISON; MATHEMATICAL COMPUTING; MAXIMUM LIKELIHOOD METHOD; NONHUMAN; NORMAL DISTRIBUTION; OBSERVATION; POISSON DISTRIBUTION; PRIORITY JOURNAL; PROBABILITY; RELIABILITY; STATISTICAL ANALYSIS; STATISTICAL PARAMETERS;

EID: 21444446007     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti451     Document Type: Article

References (7)

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2. Hopcroft,J.E. and Ullman,J.D. (1979) Introduction to Automata Theory, Languages, and Computation. Addison-Wesley, Reading, MA.
3. Nuel,G. (2004) LD-SPatt: large deviations statistics for patterns on Markov chains. J. Comp. Biol., 11, 1023-1033.
4. Press,W.H. et al. (1992) Numerical Recipes in C. Cambridge University Press.
5. Régnier,M. (2000) A unified approach to word occurrence probabilities. Discrete Appl. Math., 104, 259-280.
6. Schbath,S. (1997) An efficient statistic to detect over- and under-represented words in DNA sequences. J. Comp. Biol., 4, 189-192.
7. Stewart,W.J. (1994) Introduction to Numerical Solution to Markov Chains. Princeton University Press.