-
1
-
-
0027250665
-
Primary structure effects on peptide group hydrogen exchange
-
Bai, Y., Milne, J.S., Mayne, L., and Englander, S.W. 1993. Primary structure effects on peptide group hydrogen exchange. Proteins 17: 75-86.
-
(1993)
Proteins
, vol.17
, pp. 75-86
-
-
Bai, Y.1
Milne, J.S.2
Mayne, L.3
Englander, S.W.4
-
2
-
-
0029643523
-
Protein folding intermediates: Native-state hydrogen exchange
-
Bai, Y., Sosnick, T.R., Mayne, L., and Englander, S.W. 1995. Protein folding intermediates: Native-state hydrogen exchange. Science 269: 192-197.
-
(1995)
Science
, vol.269
, pp. 192-197
-
-
Bai, Y.1
Sosnick, T.R.2
Mayne, L.3
Englander, S.W.4
-
3
-
-
0042343673
-
Folding subdomains of thioredoxin characterized by native-state hydrogen exchange
-
Bhutani, N. and Udgaonkar, J.B. 2003. Folding subdomains of thioredoxin characterized by native-state hydrogen exchange. Protein Sci. 12: 1719-1731.
-
(2003)
Protein Sci.
, vol.12
, pp. 1719-1731
-
-
Bhutani, N.1
Udgaonkar, J.B.2
-
4
-
-
25144470141
-
Mutational analysis demonstrates that specific electrostatic interactions can play a key role in the denatured state ensemble of proteins
-
Cho, J.H. and Raleigh, D.P. 2005. Mutational analysis demonstrates that specific electrostatic interactions can play a key role in the denatured state ensemble of proteins. J. Mol. Biol. 353: 174-185.
-
(2005)
J. Mol. Biol.
, vol.353
, pp. 174-185
-
-
Cho, J.H.1
Raleigh, D.P.2
-
5
-
-
1942521649
-
Thermodynamics and kinetics of non-native interactions in protein folding: A single point mutant significantly stabilizes the N-terminal domain of L9 by modulating non-native interactions in the denatured state
-
Cho, J.H., Sato, S., and Raleigh, D.P. 2004. Thermodynamics and kinetics of non-native interactions in protein folding: A single point mutant significantly stabilizes the N-terminal domain of L9 by modulating non-native interactions in the denatured state. J. Mol. Biol. 338: 827-837.
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 827-837
-
-
Cho, J.H.1
Sato, S.2
Raleigh, D.P.3
-
6
-
-
0037172787
-
Relationship between the native-state hydrogen exchange and folding pathways of a four-helix bundle protein
-
Chu, R., Pei, W., Takei, J., and Bai, Y. 2002. Relationship between the native-state hydrogen exchange and folding pathways of a four-helix bundle protein. Biochemistry 41: 7998-8003.
-
(2002)
Biochemistry
, vol.41
, pp. 7998-8003
-
-
Chu, R.1
Pei, W.2
Takei, J.3
Bai, Y.4
-
7
-
-
0041846681
-
Aromatic and methyl NOEs highlight hydrophobic clustering in the unfolded state of an SH3 domain
-
Crowhurst, K.A. and Forman-Kay, J.D. 2003. Aromatic and methyl NOEs highlight hydrophobic clustering in the unfolded state of an SH3 domain. Biochemistry 42: 8687-8695.
-
(2003)
Biochemistry
, vol.42
, pp. 8687-8695
-
-
Crowhurst, K.A.1
Forman-Kay, J.D.2
-
8
-
-
0030612609
-
Hydrogen exchange: The modern legacy of Linderstrom-Lang
-
Englander, S.W., Mayne, L., Bai, Y., and Sosnick, T.R. 1997. Hydrogen exchange: the modern legacy of Linderstrom-Lang. Protein Sci. 6: 1101-1109.
-
(1997)
Protein Sci.
, vol.6
, pp. 1101-1109
-
-
Englander, S.W.1
Mayne, L.2
Bai, Y.3
Sosnick, T.R.4
-
9
-
-
4344704080
-
Reassessing random-coil statistics in unfolded proteins
-
Fitzkee, N.C. and Rose, G.D. 2004. Reassessing random-coil statistics in unfolded proteins. Proc. Natl. Acad. Sci. 101: 12497-12502.
-
(2004)
Proc. Natl. Acad. Sci.
, vol.101
, pp. 12497-12502
-
-
Fitzkee, N.C.1
Rose, G.D.2
-
10
-
-
0032539953
-
Local dynamics and stability of apocytochrome b562 examined by hydrogen exchange
-
Fuentes, E.J. and Wand, A.J. 1998. Local dynamics and stability of apocytochrome b562 examined by hydrogen exchange. Biochemistry 37: 3687-3698.
-
(1998)
Biochemistry
, vol.37
, pp. 3687-3698
-
-
Fuentes, E.J.1
Wand, A.J.2
-
11
-
-
6444222991
-
Use of glass electrodes to measure acidities in deuterium oxide
-
Glasoe, P.K. and Long, F.A. 1960. Use of glass electrodes to measure acidities in deuterium oxide. J. Phys. Chem. 64: 188-190.
-
(1960)
J. Phys. Chem.
, vol.64
, pp. 188-190
-
-
Glasoe, P.K.1
Long, F.A.2
-
12
-
-
0031444104
-
Folding dynamics of the src SH3 domain
-
Grantcharova, V.P. and Baker, D. 1997. Folding dynamics of the src SH3 domain. Biochemistry 36: 15685-15692.
-
(1997)
Biochemistry
, vol.36
, pp. 15685-15692
-
-
Grantcharova, V.P.1
Baker, D.2
-
13
-
-
0038392707
-
Energetic evidence for formation of a pH-dependent hydrophobic cluster in the denatured state of Thermus thermophilus ribonuclease H
-
Guzman-Casado, M., Parody-Morreale, A., Robic, S., Marqusee, S., and Sanchez-Ruiz, J.M. 2003. Energetic evidence for formation of a pH-dependent hydrophobic cluster in the denatured state of Thermus thermophilus ribonuclease H. J. Mol. Biol. 329: 731-743.
-
(2003)
J. Mol. Biol.
, vol.329
, pp. 731-743
-
-
Guzman-Casado, M.1
Parody-Morreale, A.2
Robic, S.3
Marqusee, S.4
Sanchez-Ruiz, J.M.5
-
14
-
-
0037126070
-
Cytochrome c folding pathway: Kinetic native-state hydrogen exchange
-
Hoang, L., Bedard, S., Krishna, M.M., Lin, Y., and Englander, S.W. 2002. Cytochrome c folding pathway: Kinetic native-state hydrogen exchange. Proc. Natl. Acad. Sci. 99: 12173-12178.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 12173-12178
-
-
Hoang, L.1
Bedard, S.2
Krishna, M.M.3
Lin, Y.4
Englander, S.W.5
-
15
-
-
0032876680
-
Protein conformational stabilities can be determined from hydrogen exchange rates
-
Huyghues-Despointes, B.M.P., Scholtz, J.M., and Pace, C.N. 1999. Protein conformational stabilities can be determined from hydrogen exchange rates. Nat. Struct. Biol. 6: 910-912.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 910-912
-
-
Huyghues-Despointes, B.M.P.1
Scholtz, J.M.2
Pace, C.N.3
-
16
-
-
0035223640
-
Measuring the conformational stability of a protein by hydrogen exchange
-
Huyghues-Despointes, B.M., Pace, C.N., Englander, S.W., and Scholtz, J.M. 2001. Measuring the conformational stability of a protein by hydrogen exchange. Methods Mol. Biol. 168: 69-92.
-
(2001)
Methods Mol. Biol.
, vol.168
, pp. 69-92
-
-
Huyghues-Despointes, B.M.1
Pace, C.N.2
Englander, S.W.3
Scholtz, J.M.4
-
17
-
-
0013994339
-
Hydrogen exchange in proteins
-
Hvidt, A. and Nielsen, S.O. 1966. Hydrogen exchange in proteins. Adv. Protein Chem. 21: 287-386.
-
(1966)
Adv. Protein Chem.
, vol.21
, pp. 287-386
-
-
Hvidt, A.1
Nielsen, S.O.2
-
18
-
-
0031552590
-
Hydrogen exchange in chymotrypsin inhibitor 2 probed by denaturants and temperature
-
Itzhaki, L.S., Neira, J.L., and Fersht, A.R. 1997. Hydrogen exchange in chymotrypsin inhibitor 2 probed by denaturants and temperature. J. Mol. Biol. 270: 89-98.
-
(1997)
J. Mol. Biol.
, vol.270
, pp. 89-98
-
-
Itzhaki, L.S.1
Neira, J.L.2
Fersht, A.R.3
-
19
-
-
28244437028
-
The Yin and Yang of protein folding
-
Jahn, T.R. and Radford, S.E. 2005. The Yin and Yang of protein folding. FEBS J. 272: 5962-5970.
-
(2005)
FEBS J.
, vol.272
, pp. 5962-5970
-
-
Jahn, T.R.1
Radford, S.E.2
-
20
-
-
4344716256
-
Random-coil behavior and the dimensions of chemically unfolded proteins
-
Kohn, J.E., Millett, I.S., Jacob, J., Zagrovic, B., Dillon, T.M., Cingel, N., Dothager, R.S., Seifert, S., Thiyagarajan, P., Sosnick, T.R., et al. 2004. Random-coil behavior and the dimensions of chemically unfolded proteins. Proc. Natl. Acad. Sci. 101: 12491-12496.
-
(2004)
Proc. Natl. Acad. Sci.
, vol.101
, pp. 12491-12496
-
-
Kohn, J.E.1
Millett, I.S.2
Jacob, J.3
Zagrovic, B.4
Dillon, T.M.5
Cingel, N.6
Dothager, R.S.7
Seifert, S.8
Thiyagarajan, P.9
Sosnick, T.R.10
-
21
-
-
0043237588
-
Dynamics of unfolded polypeptide chains as model for the earliest steps in protein folding
-
Krieger, F., Fierz, B., Bieri, O., Drewello, M., and Kiefhaber, T. 2003. Dynamics of unfolded polypeptide chains as model for the earliest steps in protein folding. J. Mol. Biol. 332: 265-274.
-
(2003)
J. Mol. Biol.
, vol.332
, pp. 265-274
-
-
Krieger, F.1
Fierz, B.2
Bieri, O.3
Drewello, M.4
Kiefhaber, T.5
-
22
-
-
0030950608
-
Modular peptide recognition domains in eukaryotic signaling
-
Kuriyan, J. and Cowburn, D. 1997. Modular peptide recognition domains in eukaryotic signaling. Annu. Rev. Biophys. Biomol. Struct. 26: 259-288.
-
(1997)
Annu. Rev. Biophys. Biomol. Struct.
, vol.26
, pp. 259-288
-
-
Kuriyan, J.1
Cowburn, D.2
-
23
-
-
0036088602
-
The linkage between protein folding and functional cooperativity: Two sides of the same coin?
-
Luque, I., Leavitt, S.A., and Freire, E. 2002. The linkage between protein folding and functional cooperativity: Two sides of the same coin? Annu. Rev. Biophys. Biomol. Struct. 31: 235-256.
-
(2002)
Annu. Rev. Biophys. Biomol. Struct.
, vol.31
, pp. 235-256
-
-
Luque, I.1
Leavitt, S.A.2
Freire, E.3
-
24
-
-
0036147568
-
Multiple diverse ligands binding at a single protein site: A matter of pre-existing populations
-
Ma, B., Shatsky, M., Wolfson, H.J., and Nussinov, R. 2002. Multiple diverse ligands binding at a single protein site: A matter of pre-existing populations. Protein Sci. 11: 184-197.
-
(2002)
Protein Sci.
, vol.11
, pp. 184-197
-
-
Ma, B.1
Shatsky, M.2
Wolfson, H.J.3
Nussinov, R.4
-
25
-
-
0029127076
-
Solvent isotope effect and protein stability
-
Makhatadze, G.I., Clore, G.M., and Gronenborn, A.M. 1995. Solvent isotope effect and protein stability. Nat. Struct. Biol. 2: 852-855.
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 852-855
-
-
Makhatadze, G.I.1
Clore, G.M.2
Gronenborn, A.M.3
-
26
-
-
0034992645
-
A method for efficient isotopic labeling of recombinant proteins
-
Marley, J., Lu, M., and Bracken, C. 2001. A method for efficient isotopic labeling of recombinant proteins. J. Biomol. NMR 20: 71-75.
-
(2001)
J. Biomol. NMR
, vol.20
, pp. 71-75
-
-
Marley, J.1
Lu, M.2
Bracken, C.3
-
27
-
-
20044363782
-
Protein folding: Defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins. 2005
-
Maxwell, K.L., Wildes, D., Zarrine-Afsar, A., De Los Rios, M.A., Brown, A.G., Friel, C.T., Hedberg, L., Horng, J.C., Bona, D., Miller, E.J., et al. 2005. Protein folding: Defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins. 2005. Protein Sci. 14: 602-616.
-
(2005)
Protein Sci.
, vol.14
, pp. 602-616
-
-
Maxwell, K.L.1
Wildes, D.2
Zarrine-Afsar, A.3
De Los Rios, M.A.4
Brown, A.G.5
Friel, C.T.6
Hedberg, L.7
Horng, J.C.8
Bona, D.9
Miller, E.J.10
-
28
-
-
0035970299
-
Dramatic stabilization of an SH3 domain by a single substitution: Roles of the folded and unfolded states
-
Mok, Y.K., Elisseeva, E.L., Davidson, A.R., and Forman-Kay, J.D. 2001. Dramatic stabilization of an SH3 domain by a single substitution: Roles of the folded and unfolded states. J. Mol. Biol. 307: 913-928.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 913-928
-
-
Mok, Y.K.1
Elisseeva, E.L.2
Davidson, A.R.3
Forman-Kay, J.D.4
-
29
-
-
0028820703
-
Denaturant m values and heat capacity changes: Relation to changes in accessible surface areas of protein unfolding
-
Myers, J.K., Pace, C.N., and Scholtz, J.M. 1995. Denaturant m values and heat capacity changes: Relation to changes in accessible surface areas of protein unfolding. Protein Sci. 4: 2138-2148.
-
(1995)
Protein Sci.
, vol.4
, pp. 2138-2148
-
-
Myers, J.K.1
Pace, C.N.2
Scholtz, J.M.3
-
30
-
-
0036304151
-
Differences between the prion protein and its homolog Doppel: A partially structured state with implications for scrapie formation
-
Nicholson, E.M., Mo, H., Prusiner, S.B., Cohen, F.E., and Marqusee, S. 2002. Differences between the prion protein and its homolog Doppel: A partially structured state with implications for scrapie formation. J. Mol. Biol. 316: 807-815.
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 807-815
-
-
Nicholson, E.M.1
Mo, H.2
Prusiner, S.B.3
Cohen, F.E.4
Marqusee, S.5
-
31
-
-
0022555885
-
Determination and analysis of urea and guanidine hydrochloride denaturation curves
-
Pace, C.N. 1986. Determination and analysis of urea and guanidine hydrochloride denaturation curves. Methods Enzymol. 131: 266-280.
-
(1986)
Methods Enzymol.
, vol.131
, pp. 266-280
-
-
Pace, C.N.1
-
32
-
-
6344285316
-
Probing the high energy states in proteins by proteolysis
-
Park, C. and Marqusee, S. 2004. Probing the high energy states in proteins by proteolysis. J. Mol. Biol. 343: 1467-1476.
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 1467-1476
-
-
Park, C.1
Marqusee, S.2
-
33
-
-
0031908874
-
Hydrogen exchange studies of protein structure
-
Raschke, T.M. and Marqusee, S. 1998. Hydrogen exchange studies of protein structure. Curr. Opin. Biotechnol. 9: 80-86.
-
(1998)
Curr. Opin. Biotechnol.
, vol.9
, pp. 80-86
-
-
Raschke, T.M.1
Marqusee, S.2
-
34
-
-
0141816814
-
Role of residual structure in the unfolded state of a thermophilic protein
-
Robic, S., Guzman-Casado, M., Sanchez-Ruiz, J.M., and Marqusee, S. 2003. Role of residual structure in the unfolded state of a thermophilic protein. Proc. Natl. Acad. Sci. 100: 11345-11349.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 11345-11349
-
-
Robic, S.1
Guzman-Casado, M.2
Sanchez-Ruiz, J.M.3
Marqusee, S.4
-
35
-
-
0023697408
-
Unfolding free-energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl α-chymotrypsin using different denaturants
-
Santoro, M.M. and Bolen, D.W. 1988. Unfolding free-energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl α-chymotrypsin using different denaturants. Biochemistry 27: 8063-8068.
-
(1988)
Biochemistry
, vol.27
, pp. 8063-8068
-
-
Santoro, M.M.1
Bolen, D.W.2
-
36
-
-
0030320442
-
The concept of a random coil: Residual structure in peptides and denatured proteins
-
Smith, L.J., Fiebig, K.M., Schwalbe, H., and Dobson, C.M. 1996. The concept of a random coil: Residual structure in peptides and denatured proteins. Fold. Des. 1: R95-R106.
-
(1996)
Fold. Des.
, vol.1
-
-
Smith, L.J.1
Fiebig, K.M.2
Schwalbe, H.3
Dobson, C.M.4
-
37
-
-
0034718450
-
A change in the apparent m value reveals a populated intermediate under equilibrium conditions in Escherichia coli ribonuclease HI
-
Spudich, G. and Marqusee, S. 2000. A change in the apparent m value reveals a populated intermediate under equilibrium conditions in Escherichia coli ribonuclease HI. Biochemistry 39: 11677-11683.
-
(2000)
Biochemistry
, vol.39
, pp. 11677-11683
-
-
Spudich, G.1
Marqusee, S.2
-
38
-
-
4344642067
-
Protein motions promote catalysis
-
Tousignant, A. and Pelletier, J.N. 2004. Protein motions promote catalysis. Chem. Biol. 11: 1037-1042.
-
(2004)
Chem. Biol.
, vol.11
, pp. 1037-1042
-
-
Tousignant, A.1
Pelletier, J.N.2
-
39
-
-
22244458003
-
Charge-charge interactions in the denatured state influence the folding kinetics of ribonuclease Sa
-
Trefethen, J.M., Pace, C.N., Scholtz, J.M., and Brems, D.N. 2005. Charge-charge interactions in the denatured state influence the folding kinetics of ribonuclease Sa. Protein Sci. 14: 1934-1938.
-
(2005)
Protein Sci.
, vol.14
, pp. 1934-1938
-
-
Trefethen, J.M.1
Pace, C.N.2
Scholtz, J.M.3
Brems, D.N.4
-
40
-
-
0038286126
-
Hydrogen-exchange stability analysis of Bergerac-Src homology 3 variants allows the characterization of a folding intermediate in equilibrium
-
Viguera, A.R. and Serrano, L. 2003. Hydrogen-exchange stability analysis of Bergerac-Src homology 3 variants allows the characterization of a folding intermediate in equilibrium. Proc. Natl. Acad. Sci. 100: 5730-5735.
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, pp. 5730-5735
-
-
Viguera, A.R.1
Serrano, L.2
-
41
-
-
0027409064
-
Binding of a high affinity phosphotyrosyl peptide to the Src SH2 domain: Crystal structures of the complexed and peptide-free forms
-
Waksman, G., Shoelson, S.E., Pant, N., Cowburn, D., and Kuriyan, J. 1993. Binding of a high affinity phosphotyrosyl peptide to the Src SH2 domain: Crystal structures of the complexed and peptide-free forms. Cell 72: 779-790.
-
(1993)
Cell
, vol.72
, pp. 779-790
-
-
Waksman, G.1
Shoelson, S.E.2
Pant, N.3
Cowburn, D.4
Kuriyan, J.5
-
42
-
-
33947332551
-
On refractive indices of aqueous solutions of urea
-
Warren, J.R. and Gordon, J.A. 1966. On refractive indices of aqueous solutions of urea. J. Phys. Chem. 70: 297.
-
(1966)
J. Phys. Chem.
, vol.70
, pp. 297
-
-
Warren, J.R.1
Gordon, J.A.2
-
43
-
-
11144243217
-
Hydrogen exchange and ligand binding: Ligand-dependent and ligand-independent protection in the Src SH3 domain
-
Wildes, D. and Marqusee, S. 2005. Hydrogen exchange and ligand binding: Ligand-dependent and ligand-independent protection in the Src SH3 domain. Protein Sci. 14: 81-88.
-
(2005)
Protein Sci.
, vol.14
, pp. 81-88
-
-
Wildes, D.1
Marqusee, S.2
-
44
-
-
0032879755
-
A model of the changes in denatured state structure underlying m value effects in staphylococcal nuclease
-
Wrabl, J. and Shortle, D. 1999. A model of the changes in denatured state structure underlying m value effects in staphylococcal nuclease. Nat. Struct. Biol. 6: 876-883.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 876-883
-
-
Wrabl, J.1
Shortle, D.2
-
45
-
-
0030631570
-
Characterization of the free energy spectrum of peptostreptococcal protein L.
-
Yi, Q., Scalley, M.L., Simons, K.T., Gladwin, S.T., and Baker, D. 1997. Characterization of the free energy spectrum of peptostreptococcal protein L. Fold. Des. 2: 271-280.
-
(1997)
Fold. Des.
, vol.2
, pp. 271-280
-
-
Yi, Q.1
Scalley, M.L.2
Simons, K.T.3
Gladwin, S.T.4
Baker, D.5
|