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Volumn 29, Issue 5, 2006, Pages 349-357

Evaluation of gene expression analysis using RNA-targeted partial genome arrays

Author keywords

Direct labelling and detection; DNA microarrays; Expression profiling; Non specific hybridization; RNA hybridization

Indexed keywords

BACTERIAL RNA;

EID: 33745656390     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2006.03.005     Document Type: Article
Times cited : (10)

References (35)
  • 1
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena M., Shalon D., Davis R.W., and Brown P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270 (1995) 467-470
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 2
    • 22244458625 scopus 로고    scopus 로고
    • Applications of DNA microarrays in biology
    • Stoughton R.B. Applications of DNA microarrays in biology. Annu. Rev. Biochem. 74 (2004) 53-82
    • (2004) Annu. Rev. Biochem. , vol.74 , pp. 53-82
    • Stoughton, R.B.1
  • 6
    • 0036898577 scopus 로고    scopus 로고
    • Microarray data normalization and transformation
    • Quackenbush J. Microarray data normalization and transformation. Nat. Genet. 32 Suppl. (2002) 496-501
    • (2002) Nat. Genet. , vol.32 , Issue.SUPPL , pp. 496-501
    • Quackenbush, J.1
  • 7
    • 0038236515 scopus 로고    scopus 로고
    • Growth and magnetosome formation by microaerophilic Magnetospirillum strains in an oxygen-controlled fermentor
    • Heyen U., and Schüler D. Growth and magnetosome formation by microaerophilic Magnetospirillum strains in an oxygen-controlled fermentor. Appl. Microbiol. Biotechnol. 61 (2003) 536-544
    • (2003) Appl. Microbiol. Biotechnol. , vol.61 , pp. 536-544
    • Heyen, U.1    Schüler, D.2
  • 8
    • 17344383176 scopus 로고    scopus 로고
    • Characterization of a spontaneous nonmagnetic mutant of Magnetospirillum gryphiswaldense reveals a large deletion comprising a putative magnetosome island
    • Schübbe S., Kube M., Scheffel A., Wawer C., Heyen U., Meyerdierks A., Madkour M., Mayer F., Reinhardt R., and Schüler D. Characterization of a spontaneous nonmagnetic mutant of Magnetospirillum gryphiswaldense reveals a large deletion comprising a putative magnetosome island. J. Bacteriol. (2003) 5779-5790
    • (2003) J. Bacteriol. , pp. 5779-5790
    • Schübbe, S.1    Kube, M.2    Scheffel, A.3    Wawer, C.4    Heyen, U.5    Meyerdierks, A.6    Madkour, M.7    Mayer, F.8    Reinhardt, R.9    Schüler, D.10
  • 9
    • 27144485750 scopus 로고    scopus 로고
    • A hypervariable 130-kilobase genomic region of Magnetospirillum gryphiswaldense comprises a magnetosome island which undergoes frequent rearrangements during stationary growth
    • Ullrich S., Kube M., Schübbe S., Reinhardt R., and Schüler D. A hypervariable 130-kilobase genomic region of Magnetospirillum gryphiswaldense comprises a magnetosome island which undergoes frequent rearrangements during stationary growth. J. Bacteriol. 187 (2005) 7176-7184
    • (2005) J. Bacteriol. , vol.187 , pp. 7176-7184
    • Ullrich, S.1    Kube, M.2    Schübbe, S.3    Reinhardt, R.4    Schüler, D.5
  • 10
    • 0025994679 scopus 로고
    • The genus Magnetospirillum gen. nov., description of Magnetospirillum gryphiswaldense sp. nov. and transfer of Aquaspirillum magnetotacticum to Magnetospirillum magnetotacticum comb. nov
    • Schleifer K.H., Schüler D., Spring S., Weizenegger M., Amann R., Ludwig W., and Köhler M. The genus Magnetospirillum gen. nov., description of Magnetospirillum gryphiswaldense sp. nov. and transfer of Aquaspirillum magnetotacticum to Magnetospirillum magnetotacticum comb. nov. Syst. Appl. Microbiol. 14 (1991) 379-385
    • (1991) Syst. Appl. Microbiol. , vol.14 , pp. 379-385
    • Schleifer, K.H.1    Schüler, D.2    Spring, S.3    Weizenegger, M.4    Amann, R.5    Ludwig, W.6    Köhler, M.7
  • 11
    • 0001154765 scopus 로고
    • The isolation of a new magnetic spirillum
    • Schüler D., and Köhler M. The isolation of a new magnetic spirillum. Znetralbl. Mikrobiol. 147 (1992) 150-151
    • (1992) Znetralbl. Mikrobiol. , vol.147 , pp. 150-151
    • Schüler, D.1    Köhler, M.2
  • 12
    • 0028881994 scopus 로고
    • A simple light-scattering method to assay magnetism in Magentospirillum gryphiswaldense
    • Schüler D., Uhl R., and Baeuerlein E. A simple light-scattering method to assay magnetism in Magentospirillum gryphiswaldense. FEMS Microbial. Lett. 132 (1995) 139-145
    • (1995) FEMS Microbial. Lett. , vol.132 , pp. 139-145
    • Schüler, D.1    Uhl, R.2    Baeuerlein, E.3
  • 14
    • 0025344277 scopus 로고
    • Isolation of prokaryotic RNA and detection of specific mRNA with biotinylated probes
    • Oelmüller N.K., Steinbüchel A., and Friedrich G.C. Isolation of prokaryotic RNA and detection of specific mRNA with biotinylated probes. J. Microbiol. Methods 11 (1990) 73-84
    • (1990) J. Microbiol. Methods , vol.11 , pp. 73-84
    • Oelmüller, N.K.1    Steinbüchel, A.2    Friedrich, G.C.3
  • 15
    • 2642525491 scopus 로고    scopus 로고
    • Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton
    • Peplies J., Lau S.C.K., Pernthaler J., Amann R., and Glöckner F.O. Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton. Environ. Microbiol. 6 (2004) 638-645
    • (2004) Environ. Microbiol. , vol.6 , pp. 638-645
    • Peplies, J.1    Lau, S.C.K.2    Pernthaler, J.3    Amann, R.4    Glöckner, F.O.5
  • 19
    • 2942535948 scopus 로고    scopus 로고
    • Inactivation of the flagellin gene flaA in Magnetospirillum gryphiswaldense results in nonmagnetotactic mutants lacking flagellar filaments
    • Schultheiss D., Kube M., and Schüler D. Inactivation of the flagellin gene flaA in Magnetospirillum gryphiswaldense results in nonmagnetotactic mutants lacking flagellar filaments. Appl. Environ. Microbiol. 70 (2004) 3624-3631
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 3624-3631
    • Schultheiss, D.1    Kube, M.2    Schüler, D.3
  • 20
    • 84939587793 scopus 로고    scopus 로고
    • S. Schübbe, C. Würdemann, J. Peplies, U. Heyen, C. Wawer, F.O. Glöckner, D. Schüler, Transcriptional organization and regulation of magnetosome operons in Magnetospirillum gryphiswaldense, in revision.
  • 21
    • 0036888996 scopus 로고    scopus 로고
    • On the high value of low standards
    • Branscomb E., and Predki P. On the high value of low standards. J. Bacteriol. 184 (2002) 6406-6409
    • (2002) J. Bacteriol. , vol.184 , pp. 6406-6409
    • Branscomb, E.1    Predki, P.2
  • 22
    • 85120100473 scopus 로고    scopus 로고
    • J. Pernthaler, F.O. Glöckner, W. Schönhuber, R. Amann, Methods in Microbiology, vol. 30, Academic Press, San Diego, 2001, pp. 207-226.
  • 23
    • 0037335692 scopus 로고    scopus 로고
    • Optimization strategies for the DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes
    • Peplies J., Glöckner F.O., and Amann R. Optimization strategies for the DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes. Appl. Environ. Microbiol. 69 (2003) 1397-1407
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 1397-1407
    • Peplies, J.1    Glöckner, F.O.2    Amann, R.3
  • 25
    • 0035293021 scopus 로고    scopus 로고
    • Quantitative analysis of mRNA amplification by in vitro transcription
    • Baugh L.R., Hill A.A., Brown E.L., and Hunter C.P. Quantitative analysis of mRNA amplification by in vitro transcription. Nucleic Acids Res. 29 (2001) E29
    • (2001) Nucleic Acids Res. , vol.29
    • Baugh, L.R.1    Hill, A.A.2    Brown, E.L.3    Hunter, C.P.4
  • 27
    • 3242732932 scopus 로고    scopus 로고
    • Possible sources of dye-related signal correlation bias in two-color DNA microarray assays
    • Cox W.G., Beaudet M.P., Agnew J.Y., and Ruth J.L. Possible sources of dye-related signal correlation bias in two-color DNA microarray assays. Anal. Biochem. 331 (2004) 243-254
    • (2004) Anal. Biochem. , vol.331 , pp. 243-254
    • Cox, W.G.1    Beaudet, M.P.2    Agnew, J.Y.3    Ruth, J.L.4
  • 30
    • 0037205962 scopus 로고    scopus 로고
    • Effect of local background intensities in the normalization of cDNA microarray data with a skewed expression profiles
    • Kim J.H., Shin D.M., and Lee Y.S. Effect of local background intensities in the normalization of cDNA microarray data with a skewed expression profiles. Exp. Mol. Med. 34 (2002) 224-232
    • (2002) Exp. Mol. Med. , vol.34 , pp. 224-232
    • Kim, J.H.1    Shin, D.M.2    Lee, Y.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.