-
1
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena M., Shalon D., Davis R.W., and Brown P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270 (1995) 467-470
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
2
-
-
22244458625
-
Applications of DNA microarrays in biology
-
Stoughton R.B. Applications of DNA microarrays in biology. Annu. Rev. Biochem. 74 (2004) 53-82
-
(2004)
Annu. Rev. Biochem.
, vol.74
, pp. 53-82
-
-
Stoughton, R.B.1
-
5
-
-
0033039498
-
Determination of ancestral alleles for human single-nucleotide polymorphisms using high-density oligonucleotide arrays
-
Hacia Joseph G., Fan J.-B., Ryder O., Jin L., Edgemon K., Ghandour G., Mayer R.A., Sun B., Hsie L., Robbins Christiane M., Brody Lawrence C., Wang D., Lander Eric S., Lipshutz R., Fodor Stephen P.A., and Collins Francis S. Determination of ancestral alleles for human single-nucleotide polymorphisms using high-density oligonucleotide arrays. Nat. Genet. 22 (1999) 164-167
-
(1999)
Nat. Genet.
, vol.22
, pp. 164-167
-
-
Hacia Joseph, G.1
Fan, J.-B.2
Ryder, O.3
Jin, L.4
Edgemon, K.5
Ghandour, G.6
Mayer, R.A.7
Sun, B.8
Hsie, L.9
Robbins Christiane, M.10
Brody Lawrence, C.11
Wang, D.12
Lander Eric, S.13
Lipshutz, R.14
Fodor Stephen, P.A.15
Collins Francis, S.16
-
6
-
-
0036898577
-
Microarray data normalization and transformation
-
Quackenbush J. Microarray data normalization and transformation. Nat. Genet. 32 Suppl. (2002) 496-501
-
(2002)
Nat. Genet.
, vol.32
, Issue.SUPPL
, pp. 496-501
-
-
Quackenbush, J.1
-
7
-
-
0038236515
-
Growth and magnetosome formation by microaerophilic Magnetospirillum strains in an oxygen-controlled fermentor
-
Heyen U., and Schüler D. Growth and magnetosome formation by microaerophilic Magnetospirillum strains in an oxygen-controlled fermentor. Appl. Microbiol. Biotechnol. 61 (2003) 536-544
-
(2003)
Appl. Microbiol. Biotechnol.
, vol.61
, pp. 536-544
-
-
Heyen, U.1
Schüler, D.2
-
8
-
-
17344383176
-
Characterization of a spontaneous nonmagnetic mutant of Magnetospirillum gryphiswaldense reveals a large deletion comprising a putative magnetosome island
-
Schübbe S., Kube M., Scheffel A., Wawer C., Heyen U., Meyerdierks A., Madkour M., Mayer F., Reinhardt R., and Schüler D. Characterization of a spontaneous nonmagnetic mutant of Magnetospirillum gryphiswaldense reveals a large deletion comprising a putative magnetosome island. J. Bacteriol. (2003) 5779-5790
-
(2003)
J. Bacteriol.
, pp. 5779-5790
-
-
Schübbe, S.1
Kube, M.2
Scheffel, A.3
Wawer, C.4
Heyen, U.5
Meyerdierks, A.6
Madkour, M.7
Mayer, F.8
Reinhardt, R.9
Schüler, D.10
-
9
-
-
27144485750
-
A hypervariable 130-kilobase genomic region of Magnetospirillum gryphiswaldense comprises a magnetosome island which undergoes frequent rearrangements during stationary growth
-
Ullrich S., Kube M., Schübbe S., Reinhardt R., and Schüler D. A hypervariable 130-kilobase genomic region of Magnetospirillum gryphiswaldense comprises a magnetosome island which undergoes frequent rearrangements during stationary growth. J. Bacteriol. 187 (2005) 7176-7184
-
(2005)
J. Bacteriol.
, vol.187
, pp. 7176-7184
-
-
Ullrich, S.1
Kube, M.2
Schübbe, S.3
Reinhardt, R.4
Schüler, D.5
-
10
-
-
0025994679
-
The genus Magnetospirillum gen. nov., description of Magnetospirillum gryphiswaldense sp. nov. and transfer of Aquaspirillum magnetotacticum to Magnetospirillum magnetotacticum comb. nov
-
Schleifer K.H., Schüler D., Spring S., Weizenegger M., Amann R., Ludwig W., and Köhler M. The genus Magnetospirillum gen. nov., description of Magnetospirillum gryphiswaldense sp. nov. and transfer of Aquaspirillum magnetotacticum to Magnetospirillum magnetotacticum comb. nov. Syst. Appl. Microbiol. 14 (1991) 379-385
-
(1991)
Syst. Appl. Microbiol.
, vol.14
, pp. 379-385
-
-
Schleifer, K.H.1
Schüler, D.2
Spring, S.3
Weizenegger, M.4
Amann, R.5
Ludwig, W.6
Köhler, M.7
-
11
-
-
0001154765
-
The isolation of a new magnetic spirillum
-
Schüler D., and Köhler M. The isolation of a new magnetic spirillum. Znetralbl. Mikrobiol. 147 (1992) 150-151
-
(1992)
Znetralbl. Mikrobiol.
, vol.147
, pp. 150-151
-
-
Schüler, D.1
Köhler, M.2
-
12
-
-
0028881994
-
A simple light-scattering method to assay magnetism in Magentospirillum gryphiswaldense
-
Schüler D., Uhl R., and Baeuerlein E. A simple light-scattering method to assay magnetism in Magentospirillum gryphiswaldense. FEMS Microbial. Lett. 132 (1995) 139-145
-
(1995)
FEMS Microbial. Lett.
, vol.132
, pp. 139-145
-
-
Schüler, D.1
Uhl, R.2
Baeuerlein, E.3
-
13
-
-
0035987476
-
Analysis of N-acetylglucosamine metabolism in the marine bacterium Pirellula sp. strain 1 by a proteomic approach
-
Rabus R., Rabus D., Helbig R., Bauer M., Glöckner F.O., Kube M., Schlesner H., Reinhardt R., and Amann R. Analysis of N-acetylglucosamine metabolism in the marine bacterium Pirellula sp. strain 1 by a proteomic approach. Proteomics 2 (2002) 649-655
-
(2002)
Proteomics
, vol.2
, pp. 649-655
-
-
Rabus, R.1
Rabus, D.2
Helbig, R.3
Bauer, M.4
Glöckner, F.O.5
Kube, M.6
Schlesner, H.7
Reinhardt, R.8
Amann, R.9
-
14
-
-
0025344277
-
Isolation of prokaryotic RNA and detection of specific mRNA with biotinylated probes
-
Oelmüller N.K., Steinbüchel A., and Friedrich G.C. Isolation of prokaryotic RNA and detection of specific mRNA with biotinylated probes. J. Microbiol. Methods 11 (1990) 73-84
-
(1990)
J. Microbiol. Methods
, vol.11
, pp. 73-84
-
-
Oelmüller, N.K.1
Steinbüchel, A.2
Friedrich, G.C.3
-
15
-
-
2642525491
-
Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton
-
Peplies J., Lau S.C.K., Pernthaler J., Amann R., and Glöckner F.O. Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton. Environ. Microbiol. 6 (2004) 638-645
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 638-645
-
-
Peplies, J.1
Lau, S.C.K.2
Pernthaler, J.3
Amann, R.4
Glöckner, F.O.5
-
16
-
-
0037990085
-
Chemical RNA labeling without 3′ end bias using fluorescent cis-platin compounds
-
Hagedoorn R., Joseph R., Kasanmoentalib S., Eilers P., Killian J., and Raap A.K. Chemical RNA labeling without 3′ end bias using fluorescent cis-platin compounds. Biotechniques 34 5 (2003) 974-976, 978, 980
-
(2003)
Biotechniques
, vol.34
, Issue.5
-
-
Hagedoorn, R.1
Joseph, R.2
Kasanmoentalib, S.3
Eilers, P.4
Killian, J.5
Raap, A.K.6
-
17
-
-
2542523843
-
ARB: a software environment for sequence data
-
Ludwig W., Strunk O., Westram R., Richter L., Meier H., Kumar Y., Buchner A., Lai T., Steppi S., Jobb G., Forster W., Brettske I., Gerber S., Ginhart A.W., Gross O., Grumann S., Hermann S., Jost R., Konig A., Liss T., Lussmann R., May M., Nonhoff B., Reichel B., Strehlow R., Stamatakis A., Stuckmann N., Vilbig A., Lenke M., Ludwig T., Bode A., and Schleifer K.H. ARB: a software environment for sequence data. Nucleic Acids Res. 32 (2004) 1363-1371
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Kumar, Y.6
Buchner, A.7
Lai, T.8
Steppi, S.9
Jobb, G.10
Forster, W.11
Brettske, I.12
Gerber, S.13
Ginhart, A.W.14
Gross, O.15
Grumann, S.16
Hermann, S.17
Jost, R.18
Konig, A.19
Liss, T.20
Lussmann, R.21
May, M.22
Nonhoff, B.23
Reichel, B.24
Strehlow, R.25
Stamatakis, A.26
Stuckmann, N.27
Vilbig, A.28
Lenke, M.29
Ludwig, T.30
Bode, A.31
Schleifer, K.H.32
more..
-
18
-
-
1842592740
-
Biochemical and proteomic analysis of the magnetosome membrane in Magnetospirillum gryphiswaldense
-
Grünberg K., Müller E., Otto A., Reszka R., Linder D., Kube M., Reinhardt R., and Schüler D. Biochemical and proteomic analysis of the magnetosome membrane in Magnetospirillum gryphiswaldense. Appl. Environ. Microbiol. 70 (2004) 1040-1050
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 1040-1050
-
-
Grünberg, K.1
Müller, E.2
Otto, A.3
Reszka, R.4
Linder, D.5
Kube, M.6
Reinhardt, R.7
Schüler, D.8
-
19
-
-
2942535948
-
Inactivation of the flagellin gene flaA in Magnetospirillum gryphiswaldense results in nonmagnetotactic mutants lacking flagellar filaments
-
Schultheiss D., Kube M., and Schüler D. Inactivation of the flagellin gene flaA in Magnetospirillum gryphiswaldense results in nonmagnetotactic mutants lacking flagellar filaments. Appl. Environ. Microbiol. 70 (2004) 3624-3631
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 3624-3631
-
-
Schultheiss, D.1
Kube, M.2
Schüler, D.3
-
20
-
-
84939587793
-
-
S. Schübbe, C. Würdemann, J. Peplies, U. Heyen, C. Wawer, F.O. Glöckner, D. Schüler, Transcriptional organization and regulation of magnetosome operons in Magnetospirillum gryphiswaldense, in revision.
-
-
-
-
21
-
-
0036888996
-
On the high value of low standards
-
Branscomb E., and Predki P. On the high value of low standards. J. Bacteriol. 184 (2002) 6406-6409
-
(2002)
J. Bacteriol.
, vol.184
, pp. 6406-6409
-
-
Branscomb, E.1
Predki, P.2
-
22
-
-
85120100473
-
-
J. Pernthaler, F.O. Glöckner, W. Schönhuber, R. Amann, Methods in Microbiology, vol. 30, Academic Press, San Diego, 2001, pp. 207-226.
-
-
-
-
23
-
-
0037335692
-
Optimization strategies for the DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes
-
Peplies J., Glöckner F.O., and Amann R. Optimization strategies for the DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes. Appl. Environ. Microbiol. 69 (2003) 1397-1407
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 1397-1407
-
-
Peplies, J.1
Glöckner, F.O.2
Amann, R.3
-
26
-
-
0037441669
-
Directly labeled mRNA produces highly precise and unbiased differential gene expression data
-
Gupta V., Cherkassky A., Chatis P., Joseph R., Johnson A.L., Broadbent J., Erickson T., and DiMeo J. Directly labeled mRNA produces highly precise and unbiased differential gene expression data. Nucleic Acids Res. 31 (2003) e13
-
(2003)
Nucleic Acids Res.
, vol.31
-
-
Gupta, V.1
Cherkassky, A.2
Chatis, P.3
Joseph, R.4
Johnson, A.L.5
Broadbent, J.6
Erickson, T.7
DiMeo, J.8
-
27
-
-
3242732932
-
Possible sources of dye-related signal correlation bias in two-color DNA microarray assays
-
Cox W.G., Beaudet M.P., Agnew J.Y., and Ruth J.L. Possible sources of dye-related signal correlation bias in two-color DNA microarray assays. Anal. Biochem. 331 (2004) 243-254
-
(2004)
Anal. Biochem.
, vol.331
, pp. 243-254
-
-
Cox, W.G.1
Beaudet, M.P.2
Agnew, J.Y.3
Ruth, J.L.4
-
28
-
-
0036202577
-
Normalizing DNA microarray data
-
Bilban M., Buehler L.K., Head S., Desoye G., and Quaranta V. Normalizing DNA microarray data. Curr. Issues Mol. Biol. 4 (2002) 57-64
-
(2002)
Curr. Issues Mol. Biol.
, vol.4
, pp. 57-64
-
-
Bilban, M.1
Buehler, L.K.2
Head, S.3
Desoye, G.4
Quaranta, V.5
-
29
-
-
0032883806
-
Housekeeping genes as internal standards: use and limits
-
Thellin O., Zorzi W., Lakaye B., Deb Borman B., Coumans B., Hennen G., Grisar T., Igout A., and Heinen E. Housekeeping genes as internal standards: use and limits. J. Biotechnol. 75 (1999) 291-295
-
(1999)
J. Biotechnol.
, vol.75
, pp. 291-295
-
-
Thellin, O.1
Zorzi, W.2
Lakaye, B.3
Deb Borman, B.4
Coumans, B.5
Hennen, G.6
Grisar, T.7
Igout, A.8
Heinen, E.9
-
30
-
-
0037205962
-
Effect of local background intensities in the normalization of cDNA microarray data with a skewed expression profiles
-
Kim J.H., Shin D.M., and Lee Y.S. Effect of local background intensities in the normalization of cDNA microarray data with a skewed expression profiles. Exp. Mol. Med. 34 (2002) 224-232
-
(2002)
Exp. Mol. Med.
, vol.34
, pp. 224-232
-
-
Kim, J.H.1
Shin, D.M.2
Lee, Y.S.3
-
31
-
-
0038220917
-
Optimization of single-base-pair mismatch discrimination in oligonucleotide microarrays
-
Urakawa H., El Fantroussi S., Smidt H., Smoot J.C., Tribou E.H., Kelly J.J., Noble P.A., and Stahl D.A. Optimization of single-base-pair mismatch discrimination in oligonucleotide microarrays. Appl. Environ. Microbiol. 69 (2003) 2848-2856
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 2848-2856
-
-
Urakawa, H.1
El Fantroussi, S.2
Smidt, H.3
Smoot, J.C.4
Tribou, E.H.5
Kelly, J.J.6
Noble, P.A.7
Stahl, D.A.8
-
33
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215 3 (1990) 403-410
-
(1990)
J. Mol. Biol.
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
34
-
-
9444294530
-
Improving signal intensities for genes with low-expression on oligonucleotide microarrays
-
Ramdas L., Cogdell D.E., Jia J.Y., Taylor E.E., Dunmire V.R., Hu L., Hamilton S.R., and Zhang W. Improving signal intensities for genes with low-expression on oligonucleotide microarrays. BMC Genomics 5 (2004) 35
-
(2004)
BMC Genomics
, vol.5
, pp. 35
-
-
Ramdas, L.1
Cogdell, D.E.2
Jia, J.Y.3
Taylor, E.E.4
Dunmire, V.R.5
Hu, L.6
Hamilton, S.R.7
Zhang, W.8
-
35
-
-
0035072249
-
Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
-
Hughes T.R., Mao M., Jones A.R., Burchard J., Marton M.J., Shannon K.W., Lefkowitz S.M., Ziman M., Schelter J.M., Meyer M.R., Kobayashi S., Davis C., Dai H., He Y.D., Stephaniants S.B., Cavet G., Walker W.L., West A., Coffey E., Shoemaker D.D., Stoughton R., Blanchard A.P., Friend S.H., and Linsley P.S. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat. Biotechnol. 19 (2001) 342-347
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 342-347
-
-
Hughes, T.R.1
Mao, M.2
Jones, A.R.3
Burchard, J.4
Marton, M.J.5
Shannon, K.W.6
Lefkowitz, S.M.7
Ziman, M.8
Schelter, J.M.9
Meyer, M.R.10
Kobayashi, S.11
Davis, C.12
Dai, H.13
He, Y.D.14
Stephaniants, S.B.15
Cavet, G.16
Walker, W.L.17
West, A.18
Coffey, E.19
Shoemaker, D.D.20
Stoughton, R.21
Blanchard, A.P.22
Friend, S.H.23
Linsley, P.S.24
more..
|