Source populations of Quercus glauca in the last glacial age in Taiwan revealed by nuclear microsatellite markers

Journal of Heredity

Volumn 97, Issue 3, 2006, Pages 261-269

  Lee, Yuan Jr ^a   Hwang, Shih Ying ^b   Ho, Kuo Chieh ^a   Lin, Tsan Piao ^a  

^a NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^b CHINESE CULTURE UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

DNA MARKER; PLANT DNA;

ARTICLE; CHLOROPLAST; CONTROLLED STUDY; DNA DETERMINATION; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; MICROSATELLITE MARKER; NONHUMAN; PLANT; PLANT GENETICS; POPULATION DIFFERENTIATION; POPULATION GENETICS; PRIORITY JOURNAL; QUERCUS GLAUCA; TAIWAN;

BASE SEQUENCE; CELL NUCLEUS; DNA PRIMERS; GENETIC MARKERS; MICROSATELLITE REPEATS; QUERCUS; TAIWAN;

QUERCUS GLAUCA;

EID: 33745646516     PISSN: 00221503     EISSN: 14657333     Source Type: Journal    
DOI: 10.1093/jhered/esj030     Document Type: Article

References (44)

1. Bonnet E and Van de Peer Y, 2002. zt: a software tool for simple and partial Mantel tests. J Stat Softw 7:1-12.
2. Burg TM, Lomax J, Almond R, Brooke MdeL, and Amos W, 2003. Unravelling dispersal patterns in an expanding population of a highly mobile seabird, the northern fulmar (Fulmarus glacialis). Proc R Soc Lond B Biol Sci 270:979-984.
3. Cheng YP, Hwang SY, and Lin TP, 2005. Potential refugia in Taiwan revealed by the phylogeographical study of Castanopsis carlesii Hayata (Fagaceae). Mol Evol 14:2075-2085.
4. Chiang TY, Hung KH, Hsu TW, and Wu WL, 2004. Lineage sorting and phylogeography in Lithocarpus formosanus and L. dodonaeifolius (Fagaceae) from Taiwan. Ann Mo Bot Gard 91:207-222.
5. Editorial Committee of the Flora of Taiwan, 2nd ed, 1994. Flora of Taiwan, vol 1. Taipei, Taiwan: Editorial Committee of the Flora of Taiwan, 2nd ed.
6. El Mousadik A and Petit RJ, 1996. High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L.) Skeels] endemic to Morocco. Theor Appl Genet 92:832-839.
7. England PR, Usher AV, Whelan RJ, and Ayre DJ, 2002. Microsatellite diversity and genetic structure of fragmented populations of the rare, fire-dependent shrub Grevillea macleayana. Mol Ecol 11:967-977.
8. Fisher J, 1966. The fulmar population of Britain and Ireland, 1959. Bird Study 13:5-45.
9. Garza JC, Slakin M, and Freimer NB, 1995. Microsatellite allele frequencies in humans and chimpanzees, with implications for constraints on allele size. Mol Biol Evol 12:594-603.
10. Goldstein DB, Linares AR, and Cavalli-Sforza LL, 1995. An evaluation of genetic distances for use with microsatellite loci. Genetics 139:463-471.
11. Goudet J, 1995. FSTAT (version 1.2): a computer program to calculate F-statistics. J Hered 86:485-486.
12. Grant PR and Grant BR, 1997. Genetics and origin of bird species. Proc Natl Acad Sci USA 94:7768-7775.
13. Grimaldi MC and Crouau-Roy B, 1997. Microsatellite allelic homoplasy due to variable flanking sequences. J Mol Evol 44:336-340.
14. Grivet D and Petit RJ, 2002. Phylogeography of the common ivy (Hedera sp.) in Europe: genetic differentiation through space and time. Mol Ecol 11:1351-1362.
15. Guillermo O, Devon EP, and Avise JC, 1997. Phylogenetic assessment of length variation at a microsatellite locus. Proc Natl Acad Sci USA 94:10745-10749.
16. Hsieh CF, Shen CF, and Yang KC, 1994. Introduction to the flora of Taiwan, 3: floristics, phytogeography, and vegetation. In: Flora of Taiwan, 2nd ed, vol 1. (Editorial Committee of the Flora of Taiwan, ed). Taipei, Taiwan: Editorial Committee of the Flora of Taiwan; 7-18.
17. Huang SF, Hwang SY, and Lin TP, 2002. Spatial pattern of chloroplast DNA variation of Cyclobalanopsis glauca in Taiwan and eastern Asia. Mol Ecol 11:2349-2458.
18. Huang SF, Hwang SY, Wang JC, Tung WF, and Lin TP, 2004. Phylogeography of Trochodendron aralioides (Trochodendraceae) in Taiwan and its adjacent areas. J Biogeogr 31:1251-1259.
19. Hurlbert SH, 1971. The nonconcept of species diversity: a critique and alternative parameters. Ecology 52:577-586.
20. Hwang SY, Lin TP, Ma CS, Lin CL, Chung JD, and Yang JC, 2003. Postglacial population growth of Cunninghamia konishii (Cupressaceae) inferred from phylogeographical and mismatch analysis of chloroplast DNA variation. Mol Ecol 12:2689-2695.
21. Isagi Y and Shuhadono S, 1997. PCR primers amplifying microsatellite loci of Quercus myrsinifolia Blume and their conservation between oak species. Mol Ecol 6:897-899
22. Johnson KP, Adler FR, and Cherry JL, 2000. Genetic and phylogenetic consequences of island biogeography. Evolution 54:387-396.
23. Lin TP, 2001. Allozyme variations in the Michelia formosana (Kanehira) Masamune (Magnoliaceae), and the inference of a glacial refugium in Taiwan. Theor Appl Genet 102:450-457.
24. Lin TP, Lu CS, Chung YL, and Yang JC, 1993. Allozyme variation in four populations of Taiwania cryptomerioides in Taiwan. Silvae Genet 42:278-284.
25. Lin TP, Wang CT, and Yang JC, 1998. Comparison of genetic diversity between Cunninghamia konishii and C. lanceolata, J Hered 89:370-373.
26. Mantel N, 1967. The detection of disease clustering and a generalized regression approach. Cancer Res 27:209-220.
27. Matsuoka Y, Mitchell SE, Kresovich S, Goodman M, and Doebley J, 2002. Micro satellites in Zea - variability, patterns of mutations, and use for evolutionary studies. Theor Appl Genet 104:436-450.
28. Murray MG and Thompson WF, 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8:4321-4325.
29. Nei M, 1987. Molecular evolutionary genetics. New York: Columbia University Press.
30. Orti G, Pearse DE, and Avise JC, 1997. Phylogenetic assessment of length variation at a microsatellite locus. Proc Natl Acad Sci USA 94:10745-10749.
31. Petit RJ, Aguinagalde I, de Beaulieu JL, Bittkau C, Brewer S, Cheddadi R, Ennos R, Fineschi S, Grivet D, Lascoux M, Mohanty A, Muller-Starck G, Demesure-Musch B, Palme A, Martin JP, Rendell S, and Vendramin GG, 2003. Glacial refugia: hotspots but not melting pots of genetic diversity. Science 300:1563-1565.
32. Raymond M and Rousset F, 1995. An exact test for population differentiation. Evolution 21:259-274.
33. Rosenberg MS, 2001. PASSAGE. Pattern analysis, spatial statistics and geographic exegesis. Version 1.0. Tempe, AZ: Department of Biology, Arizona State University.
34. Saitou N and Nei M, 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425.
35. Schaal BA, Hayworth DA, Olsen KM, Rauscher JT, and Smith WA, 1998. Phylogeographic studies in plants: problems and aspects. Mol Ecol 7:465-474.
36. Schneider S, Roessli D, and Excoffier L, 2000. Arlequin ver. 2.000: a software for population genetic data analysis. Geneva, Switzerland: Genetics and Biometry Laboratory, University of Geneva.
37. Squirrell J, Hollingsworth PM, Bateman RM, Dickson JH, Light MH, MacConaill M, and Tebbitt MC, 2001. Partitioning and diversity of nuclear and organelle markers in native and introduced populations of Epipactis helleborine (Orchidaceae). Am J Bot 88:1409-1418.
38. Sue CY, Fang K, and Huang S, 2000. Patterns of genetic variation of Alnus formosana in Taiwan. Taiwania 45:95-106.
39. Tamura K and Nei N, 1983. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512-526.
40. Tsukada M, 1966. Late Pleistocene vegetation and climate in Taiwan (Formosa). Proc Natl Acad Sci USA 55:543-548.
41. Tsukada M, 1967. Vegetation in subtropical Formosa during the Pleistocene glaciation and the Holocene. Palaeogeogr Palaeoclimatol Palaeoecol 3:49-64.
42. Wattier R, Engel CR, Saumitou-Laprade P, and Valero M, 1998. Short allele dominance as a source of heterozygote deficiency at microsatellite loci: experimental evidence at the dinucleotide locus Gv1CT in Gracilaria gracilis (Rhodophyta). Mol Ecol 7:1569-1573.
43. Wu E, Huang S, Wang JC, and Tong WF, 2001. Allozyme variation and the genetic structure of populations of Trochodendron aralioides, a monotypic and narrow geographic genus. J Plant Res 114:45-57.
44. Zanetto A and Kremer A, 1995. Geographical structure of gene diversity in Quercus petraea (Matt.) Liebl. I. Monolocus patterns of variation. Heredity 75:506-517.