Postglacial population growth of Cunninghamia konishii (Cupressaceae) inferred from phylogeographical and mismatch analysis of chloroplast DNA variation

Molecular Ecology

Volumn 12, Issue 10, 2003, Pages 2689-2695

  Hwang, Shih Ying ^a   Lin, Tsan Piao ^b   Ma, Chiu Shun ^a   Lin, Chung Ling ^a   Chung, Jeng Der ^c   Yang, Jenq Chuan ^c  

^a CHINESE CULTURE UNIVERSITY   (Taiwan)

^b NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^c NONE

Author keywords

cpDNA; Cunninghamia konishii; Postglacial population growth; Taiwan

Indexed keywords

CLIMATE; CUPRESSACEAE; DNA, CHLOROPLAST; GEOGRAPHY; HAPLOTYPES; PHYLOGENY; POPULATION DYNAMICS; SEQUENCE ANALYSIS, DNA; TAIWAN; VARIATION (GENETICS);

ABIES; CUNNINGHAMELLA; CUNNINGHAMIA KONISHII; CUNNINGHAMIA LANCEOLATA; CUPRESSACEAE; EMBRYOPHYTA; LANCEOLATA;

EID: 0141613140     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2003.01935.x     Document Type: Article

References (44)

1. Aris-Brosou S, Excoffier L (1996) The impact of population expansion and mutation rate heterogeneity on DNA sequence polymorphism. Molecular Biology and Evolution, 13, 494-504.
2. Bucci G, Vendramin GG (2000) Delineation of genetic zones in the European Norway spruce natural range: preliminary evidence. Molecular Ecology, 9, 923-934.
3. Chen YW, Shi JS (1983) Some fundamental problems in the genetic improvement of Chinese fir. Journal of Nanjing Institute of Forestry, 4, 1-21.
4. Chiang TY, Chiang YC, Chen YJ et al. (2001) Phylogeography of Kandelia candel in East Asiatic mangroves based on nucleotide variation of chloroplast and mitochondrial DNAs. Molecular Ecology, 10, 2697-2710.
5. Cruzan MB, Templeton AR (2000) Paleoecology and coalescence: phylogeographic analysis of hypotheses from the fossil record. Trends in Ecology and Evolution, 15, 491-496.
6. Demesure B, Sodzi N, Petit RJ (1995) A set of universal primers for amplification of polymorphic noncoding regions of mitochondrial and chloroplast DNA in plants. Molecular Ecology, 4, 129-131.
7. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf material. Phytochemistry Bulletin, 19, 11-15.
8. Dumolin-Lapègue S, Demesure B, Fineschi S, Lecorre V, Petit RJ (1997) Phylogeographic structure of white oaks throughout the European continent. Genetics, 146, 1475-1487.
9. Echt CS, DeVerno LL, Anzidei M, Vendramin GG (1998) Chloroplast microsatellites reveal population genetic diversity in red pine, Pinus resinosa Ait. Molecular Ecology, 7, 307-316.
10. Ferris C, Oliver RP, Davy AJ, Hewitt GM (1995) Using chloroplast DNA to trace postglacial migration routes of oaks into Britain. Molecular Ecology, 4, 731-738.
11. Fu YX, Li WH (1993) Statistical tests of neutrality of mutations. Genetics, 133, 693-709.
12. Hamrick JL, Godt MJW, Sherman-Broyles SL (1992) Factors influencing levels of genetic diversity in woody plant species. In: Population Genetics of Forest Trees. Proceedings of the International Symposium on Population Genetics for Trees (eds Adams WT, Strauss S, Copes D, Griffin AR), pp. 95-124. Kluwer Academic Publishers, the Netherlands.
13. Harpending H (1994) Signature of ancient population growth in a low resolution mitochondrial DNA mismatch distribution. Human Biology, 66, 591-600.
14. Hewitt GM (1996) Some genetic consequences of ice ages, and their role in divergence and speciation. Biological Journal of the Linnean Society, 58, 247-276.
15. Huang SSF, Hwang SY, Lin TP (2002) Spatial pattern of chloroplast DNA variation of Cyclobalanopsis glauca in Taiwan and East Asia. Molecular Ecology, 11, 2349-2358.
16. Hwang LH, Hwang SY, Lin TP (2000) Low chloroplast DNA variation and population differentiation of Chamaecyparis formosensis and Chamaecyparis tahoanensis. Taiwan Journal of Forest Science, 15, 229-236.
17. Hwang SY, Lin HW, Kuo YS, Lin TP (2001) RAPD variation in relation to population differentiation of Chamaecyparis formosensis and Chamaecyparis taiwanensis. Botanical Bulletin of Academia Sinica, 42, 173-179.
18. Liew PM, Chung NJ (2001) Vertical migration of forests during the last glacial period in subtropical Taiwan. Western Pacific Earth Sciences, 1, 405-414.
19. Lin TP, Wang CT, Yang JC (1998) Comparison of genetic diversity between Cunninghamia konishii and C. lanceolata. Journal of Heredity, 89, 370-373.
20. Liu T (1966) Study on the phytogeography of the conifers and taxads of Taiwan. Bulletin of the Taiwan Forest Research Institute, No. 122.
21. Liu KB (1988) Quaternary history of the temperate forest of China. Quaternary Science Review, 7, 1-20.
22. Lu SY, Peng CI, Cheng YP, Hong KH, Chiang TY (2001) Chloroplast phylogeography of Cunninghamia konishii (Cupressaceae), an endemic conifer of Taiwan. Genome, 44, 797-807.
23. Matyas G, Sperisen C (2001) Chloroplast DNA polymorphism provide evidence for postglacial re-colonisation of oaks (Quercus spp.) across the Swiss Alps. Theoretical and Applied Genetics, 102, 12-20.
24. Müller-Starck G, Liu YQ (1989) Genetics of Cunninghamia lanceolata Hook 2. Genetic variation within and between two provenance samples. Silvae Genetica, 38, 172-177.
25. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
26. Nordborg M, Innan H (2002) Molecular population genetics. Current Opinion in Plant Biology, 5, 69-73.
27. Otto SP (2000) Detecting the form of selection from DNA sequence data. Trends in Genetics, 16, 526-529.
28. Palmer JD (1987) Chloroplast systematics: uses of chloroplast DNA variation. American Naturalist, 130, S6-S29.
29. Palmer JD, Jans en RK, Michaels HJ, Chase MW, Manhart JR (1988) Chloroplast DNA variation and plant phylogeny. Annals of the Missouri Botanical Garden, 75, 1180-1206.
30. Pons O, Petit RJ (1996) Measuring and testing genetic differentiation with ordered versus unordered alleles. Genetics, 144, 1237-1245.
31. Ribeiro MM, Mariette S, Vendramin GG, Szmidt AE, Plomion C, Kremer A (2002) Comparison of genetic diversity estimates within and among populations of maritime pine using chloroplast simple-sequence repeat and amplified fragment length polymorphism data. Molecular Ecology, 11, 869-877.
32. Richardson BA, Brunsfeld SJ, Klopfenstein NB (2002) DNA from bird-dispersed seed and wind-disseminated pollen provides insights into postglacial colonization and population genetic structure of whitebark pine (Pinus albicaulis). Molecular Ecology, 11, 215-227.
33. Rogers AR, Harpending HC (1992) Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution, 9, 552-569.
34. Rozas J, Rozas R (1999) DNASP, version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics, 15, 174-175.
35. Taberlet P, Gielly L, Pautou G, Bouvet J (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology, 17, 1105-1109.
36. Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585-595.
37. Templeton AR (1998) Nested clade analysis of phylogeographic data: testing hypotheses about gene flow and population history. Molecular Ecology, 7, 381-397.
38. Templeton AR, Crandall KA, Sing CF (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics, 132, 619-633.
39. Thompson JD, Higgins DG, Gibon TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673-4680.
40. Tsukada M (1966) Late Pleistocene vegetation and climate in Taiwan (Formosa). Proceedings of the National Academy of Sciences USA, 55, 543-548.
41. Tsukada M (1967) Vegetation in subtropical Formosa during the Pleistocene glaciation and the Holocene. Palaeogeography, Palaeoclimatology, Palaeoecology, 3, 49-64.
42. Vendramin GG, Anzidei M, Madaghiele A, Sperisen C, Bucci G (2000) Chloroplast microsatellite analysis reveals the presence of population subdivision in Norway spruce (Picea abies K.). Genome, 43, 68-78.
43. Vendramin GG, Degen B, Petit RJ, Anzidei M, Madaghiele A, Ziegenhagen B (1999) High level of variation at Abies alba chloroplast microsatellite loci in Europe. Molecular Ecology, 8, 1117-1126.
44. Yeh FC, Shi J, Yang R, Hong J, Ye Z (1994) Genetic diversity and multilocus associations in Cunninghamia lanceolata (Lamb.) Hook from the People's Republic of China. Theoretical and Applied Genetics, 88, 465-471.