Differential association of protein subunits with the human RNase MRP and RNase P complexes

RNA

Volumn 12, Issue 7, 2006, Pages 1373-1382

  Welting, Tim J M ^a   Kikkert, Bastiaan J ^a   Van Venrooij, Walther J ^a   Pruijn, Ger J M ^a,b  

^a RADBOUD UNIVERSITY MEDICAL CENTER   (Netherlands)

^b RADBOUD UNIVERSITY NIJMEGEN   (Netherlands)

Author keywords

Ribonuclease; Ribonucleoprotein; RNA processing; RNase MRP; RNase P; snoRNP

Indexed keywords

EPITOPE; GLYCEROL; MITOCHONDRIAL RNA; PROTEIN SUBUNIT; RIBONUCLEASE; RIBONUCLEASE P; RIBONUCLEOPROTEIN; RIBOSOME RNA;

ARTICLE; CONTROLLED STUDY; GENETIC TRANSFECTION; HUMAN; HUMAN CELL; IMMUNOPRECIPITATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; RNA PROCESSING; SEDIMENTATION; VESICULAR STOMATITIS VIRUS;

CELL LINE, TUMOR; CLONING, MOLECULAR; ENDORIBONUCLEASES; HUMANS; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN SUBUNITS; RECOMBINANT PROTEINS; RIBONUCLEASE P; RIBONUCLEASES; RIBOSOMAL PROTEINS; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA, ANTISENSE; RNA, NEOPLASM; TRANSCRIPTION, GENETIC; TRANSFECTION;

EUKARYOTA; VESICULAR STOMATITIS VIRUS;

EID: 33745604938     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.2293906     Document Type: Article

References (47)

1. Aloy, P., Bottcher, B., Ceulemans, H., Leutwein, C., Mellwig, C., Fischer, S., Gavin, A.C., Bork, P., Superti-Furga, G., Serrano, L., et al. 2004. Structure-based assembly of protein complexes in yeast. Science 303: 2026-2029.
2. Altman, S. 2000. The road to RNase P. Nat. Struct. Biol. 7: 827-828.
3. Aravind, L., Iyer, L.M., and Anantharaman, V. 2003. The two faces of Alba: The evolutionary connection between proteins participating in chromatin structure and RNA metabolism. Genome Biol. 4: R64.
4. Baer, M., Nilsen, T.W., Costigan, C., and Altman, S. 1990. Structure and transcription of a human gene for H1 RNA, the RNA component of human RNase P. Nucleic Acids Res. 18: 97-103.
5. Barrera, A. and Pan, T. 2004. Interaction of the Bacillus subtilis RNase P with the 30S ribosomal subunit. RNA 10: 482-492.
6. Chamberlain, J.R., Pagan, R., Kindelberger, D.W., and Engelke, D.R. 1996. An RNase P RNA subunit mutation affects ribosomal RNA processing. Nucleic Acids Res. 24: 3158-3166.
7. Chamberlain, J.R., Lee, Y., Lane, W.S., and Engelke, D.R. 1998. Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP. Genes & Dev. 12: 1678-1690.
8. Chang, D.D. and Clayton, D.A. 1987. A mammalian mitochondrial RNA processing activity contains nucleus-encoded RNA. Science 235: 1178-1184.
9. Chu, S., Zengel, J.M., and Lindahl, L. 1997. A novel protein shared by RNase MRP and RNase P. RNA 3: 382-391.
10. Eder, P.S., Kekuda, R., Stolc, V., and Altman, S. 1997. Characterization of two scleroderma autoimmune antigens that copurify with human ribonuclease P. Proc. Natl. Acad. Sci. 94: 1101-1106.
11. Ganot, P., Bortolin, M.L., and Kiss, T. 1997. Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell 89: 799-809.
12. Gill, T., Cai, T., Aulds, J., Wierzbicki, S., and Schmitt, M.E. 2004. RNase MRP cleaves the CLB2 mRNA to promote cell cycle progression: Novel method of mRNA degradation. Mol. Cell. Biol. 24: 945-953.
13. Granneman, S., Gallagher, J.E., Vogelzangs, J., Horstman, W., van Venrooij, W.J., Baserga, S.J., and Pruijn, G.J. 2003. The human Imp3 and Imp4 proteins form a ternary complex with hMpp10, which only interacts with the U3 snoRNA in 60-80S ribonucleoprotein complexes. Nucleic Acids Res. 31: 1877-1887.
14. Guerrier-Takada, C., Eder, P.S., Gopalan, V., and Altman, S. 2002. Purification and characterization of Rpp25, an RNA-binding protein subunit of human ribonuclease P. RNA 8: 290-295.
15. Hughes, J.M. and Ares Jr., M. 1991. Depletion of U3 small nucleolar RNA inhibits cleavage in the 5′ external transcribed spacer of yeast pre-ribosomal RNA and impairs formation of 18S ribosomal RNA. EMBO J. 10: 4231-4239.
16. Jacobson, M.R., Cao, L.G., Taneja, K., Singer, R.H., Wang, Y.L., and Pederson, T. 1997. Nuclear domains of the RNA subunit of RNase P. J. Cell Sci. 110: 829-837.
17. Jarrous, N. 2002. Human ribonuclease P: Subunits, function, and intranuclear localization. RNA 8: 1-7.
18. Jarrous, N., Eder, P.S., Guerrier-Takada, C., Hoog, C., and Altman, S. 1998. Autoantigenic properties of some protein subunits of catalytically active complexes of human ribonuclease P. RNA 4: 407-417.
19. Jarrous, N., Eder, P.S., Wesolowski, D., and Altman, S. 1999. Rpp14 and Rpp29, two protein subunits of human ribonuclease P. RNA 5: 153-157.
20. Jarrous, N., Reiner, R., Wesolowski, D., Mann, H., Guerrier-Takada, C., and Altman, S. 2001. Function and subnuclear distribution of Rpp21, a protein subunit of the human ribonucleoprotein ribonuclease P. RNA 7: 1153-1164.
21. Jiang, T. and Altman, S. 2001. Protein-protein interactions with subunits of human nuclear RNase P. Proc. Natl. Acad. Sci. 98: 920-925.
22. Jiang, T., Guerrier-Takada, C., and Altman, S. 2001. Protein-RNA interactions in the subunits of human nuclear RNase P. RNA 7: 937-941.
23. Kiss, T., Marshallsay, C., and Filipowicz, W. 1992. 7-2/MRP RNAs in plant and mammalian cells: Association with higher order structures in the nucleolus. EMBO J. 11: 3737-3746.
24. Kiss-Laszlo, Z., Henry, Y., Bachellerie, J.P., Caizergues-Ferrer, M., and Kiss, T. 1996. Site-specific ribose methylation of preribosomal RNA: A novel function for small nucleolar RNAs. Cell 85: 1077-1088.
25. Kouzuma, Y., Mizoguchi, M., Takagi, H., Fukuhara, H., Tsukamoto, M., Numata, T., and Kimura, M. 2003. Reconstitution of archaeal ribonuclease P from RNA and four protein components. Biochem. Biophys. Res. Commun. 306: 666-673.
26. Krupp, G., Cherayil, B., Frendewey, D., Nishikawa, S., and Soll, D. 1986. Two RNA species co-purify with RNase P from the fission yeast Schizosaccharomyces pombe. EMBO J. 5: 1697-1703.
27. Lee, B., Matera, A.G., Ward, D.C., and Craft, J. 1996. Association of RNase mitochondrial RNA processing enzyme with ribonuclease P in higher ordered structures in the nucleolus: A possible coordinate role in ribosome biogenesis. Proc. Natl. Acad. Sci. 93: 11471-11476.
28. Li, Y. and Altman, S. 2001. A subunit of human nuclear RNase P has ATPase activity. Proc. Natl. Acad. Sci. 98: 441-444.
29. Lukowiak, A.A., Granneman, S., Mattox, S.A., Speckmann, W.A., Jones, K., Pluk, H., Venrooij, W.J., Terns, R.M., and Terns, M.P. 2000. Interaction of the U3-55K protein with U3 snoRNA is mediated by the box B/C motif of U3 and the WD repeats of U3-55K. Nucleic Acids Res. 28: 3462-3471.
30. Lygerou, Z., Allmang, C., Tollervey, D., and Seraphin, B. 1996a. Accurate processing of a eukaryotic precursor ribosomal RNA by ribonuclease MRP in vitro. Science 272: 268-270.
31. Lygerou, Z., Pluk, H., van Venrooij, W.J., and Seraphin, B. 1996b. hPop1: An autoantigenic protein subunit shared by the human RNase P and RNase MRP ribonucleoproteins. EMBO J. 15: 5936-5948.
32. Mann, H., Ben Asouli, Y., Schein, A., Moussa, S., and Jarrous, N. 2003. Eukaryotic RNase P: Role of RNA and protein subunits of a primordial catalytic ribonucleoprotein in RNA-based catalysis. Mol. Cell 12: 925-935.
33. Pluk, H., van Eenennaam, H., Rutjes, S.A., Pruijn, G.J., and van Venrooij, W.J. 1999. RNA-protein interactions in the human RNase MRP ribonucleoprotein complex. RNA 5: 512-524.
34. Reimer, G., Raska, I., Scheer, U., and Tan, E.M. 1988. Immunolocalization of 7-2-ribonucleoprotein in the granular component of the nucleolus. Exp. Cell Res. 176: 117-128.
35. Salinas, K., Wierzbicki, S., Zhou, L., and Schmitt, M.E. 2005. Characterization and purification of Saccharomyces cerevisiae RNase MRP reveals a new unique protein component. J. Biol. Chem. 280: 11352-11360.
36. Schmitt, M.E. and Clayton, D.A. 1994. Characterization of a unique protein component of yeast RNase MRP: An RNA-binding protein with a zinc-cluster domain. Genes & Dev. 8: 2617-2628.
37. Sharin, E., Schein, A., Mann, H., Ben Asouli, Y., and Jarrous, N. 2005. RNase P: Role of distinct protein cofactors in tRNA substrate recognition and RNA-based catalysis. Nucleic Acids Res. 33: 5120-5132.
38. Terns, M.P. and Terns, R.M. 2002. Small nucleolar RNAs: Versatile trans-acting molecules of ancient evolutionary origin. Gene Expr. 10: 17-39.
39. Tollervey, D. and Kiss, T. 1997. Function and synthesis of small nucleolar RNAs. Curr. Opin. Cell Biol. 9: 337-342.
40. Topper, J.N. and Clayton, D.A. 1990. Characterization of human MRP/Th RNA and its nuclear gene: Full length MRP/Th RNA is an active endoribonuclease when assembled as an RNP. Nucleic Acids Res. 18: 793-799.
41. Tyc, K. and Steitz, J.A. 1989. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. EMBO J. 8: 3113-3119.
42. van Eenennaam, H., Pruijn, G.J., and van Venrooij, W.J. 1999. hPop4: A new protein subunit of the human RNase MRP and RNase P ribonucleoprotein complexes. Nucleic Acids Res. 27: 2465-2472.
43. van Eenennaam, H., Lugtenberg, D., Vogelzangs, J.H., van Venrooij, W.J., and Pruijn, G.J. 2001. hPop5, a protein subunit of the human RNase MRP and RNase P endoribonucleases. J. Biol. Chem. 276: 31635-31641.
44. van Eenennaam, H., Vogelzangs, J.H., Lugtenberg, D., Van Den Hoogen, F.H., van Venrooij, W.J., and Pruijn, G.J. 2002. Identity of the RNase MRP- and RNase P-associated Th/To autoantigen. Arthritis Rheum. 46: 3266-3272.
45. Verheijen, R., Wiik, A., De Jong, B.A., Hoier-Madsen, M., Ullman, S., Halberg, P., and van Venrooij, W.J. 1994. Screening for autoantibodies to the nucleolar U3- and Th(7-2) ribonucleoproteins in patients' sera using antisense riboprobes. J. Immunol. Methods 169: 173-182.
46. Walker, S.C. and Engelke, D.R. 2006. Ribonuclease P: The evolution of an ancient RNA enzyme. Crit. Rev. Biochem. Mol. Biol. 41: 77-102.
47. Welting, T.J., van Venrooij, W.J., and Pruijn, G.J. 2004. Mutual interactions between subunits of the human RNase MRP ribonucleoprotein complex. Nucleic Acids Res. 32: 2138-2146.