Eukaryotic RNase P: Role of RNA and protein subunits of a primordial catalytic ribonucleoprotein in RNA-based catalysis

Molecular Cell

Volumn 12, Issue 4, 2003, Pages 925-935

  Mann, Hagit ^a   Ben Asouli, Yitzhak ^a   Schein, Aleks ^a   Moussa, Sana ^a   Jarrous, Nayef ^a  

^a HEBREW UNIVERSITY   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN SUBUNIT; RIBONUCLEASE P; RIBONUCLEOPROTEIN; RNA; TRANSFER RNA;

ARTICLE; CATALYSIS; ENZYME ACTIVITY; ENZYME RECONSTITUTION; ENZYME SPECIFICITY; ENZYME SUBSTRATE; EUKARYOTE; NONHUMAN; PHYLOGENETIC TREE; PROTEIN FUNCTION; RNA CLEAVAGE; RNA TRANSLATION;

BACTERIA (MICROORGANISMS); EUKARYOTA;

EID: 0242266622     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1097-2765(03)00357-5     Document Type: Article

References (45)

1. Altman S., Gopalan V., Vioque A. Varieties of RNase P. a nomenclature problem? RNA. 6:2000;1689-1694.
2. Atsumi S., Ikawa Y., Shiraishi H., Inoue T. Design and development of a catalytic ribonucleoprotein. EMBO J. 20:2001;5453-5460.
3. Barrera A., Fang X., Jacob J., Casey E., Thiyagarajan P., Pan T. Dimeric and monomeric Bacillus subtilis RNase P holoenzyme in the absence and presence of pre-tRNA substrates. Biochemistry. 41:2002;12986-12994.
4. Bartkiewicz M., Gold H., Altman S. Identification and characterization of an RNA molecule that copurifies with RNase P activity from HeLa cells. Genes Dev. 3:1989;488-499.
5. Carrara G., Calandra P., Fruscoloni P., Tocchini-Valentini G.P. Two helices plus a linker. a small model substrate for eukaryotic RNase P Proc. Natl. Acad. Sci. USA. 92:1995;2627-2631.
6. Chang D.D., Clayton D.A. A novel endoribonuclease cleaves at a priming site of mouse mitochondrial DNA replication. EMBO J. 6:1987;409-417.
7. Christian E.L., Kaye N.M., Harris M.E. Evidence for a polynuclear metal ion binding site in the catalytic domain of ribonuclease P RNA. EMBO J. 21:2002;2253-2262.
8. Clayton D.A. A big development for a small RNA. Nature. 410:2001;29-31.
9. Crary S.M., Kurz J.C., Fierke C.A. Specific phosphorothioate substitutions probe the active site of Bacillus subtilis ribonuclease P. RNA. 8:2002;933-947.
10. Doudna J.A., Cech T.R. The chemical repertoire of natural ribozymes. Nature. 418:2002;222-228.
11. Feltens R., Gossringer M., Willkomm D.K., Urlaub H., Hartmann R.K. An unusual mechanism of bacterial gene expression revealed for the RNase P protein of Thermus strains. Proc. Natl. Acad. Sci. USA. 100:2003;5724-5729.
12. Frank D.N., Pace N.R. Ribonuclease P. unity and diversity in a tRNA processing ribozyme Annu. Rev. Biochem. 67:1998;153-180.
13. Frank D.N., Adamidi C., Ehringer M.A., Pitulle C., Pace N.R. Phylogenetic-comparative analysis of the eukaryal ribonuclease P RNA. RNA. 6:2000;1895-1904.
14. Gopalan V., Baxevanis A.D., Landsman D., Altman S. Analysis of the functional role of conserved residues in the protein subunit of ribonuclease P from Escherichia coli. J. Mol. Biol. 267:1997;818-829.
15. Guerrier-Takada C., Altman S. A physical assay for and kinetic analysis of the interactions between M1 RNA and tRNA precursor substrates. Biochemistry. 32:1993;7152-7161.
16. Guerrier-Takada C., Gardiner K., Marsh T., Pace N., Altman S. The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell. 35:1983;849-857.
17. Guerrier-Takada C., van Belkum A., Pleij C.W., Altman S. Novel reactions of RNase P with a tRNA-like structure in turnip yellow mosaic virus RNA. Cell. 53:1988;267-272.
18. Guerrier-Takada C., Lumelsky N., Altman S. Specific interactions in RNA enzyme-substrate complexes. Science. 246:1989;1578-1584.
19. Hall T.A., Brown J.W. Archaeal RNase P has multiple protein subunits homologous to eukaryotic nuclear RNase P proteins. RNA. 8:2002;296-306.
20. Harris M.E., Kazantsev A.V., Chen J.L., Pace N.R. Analysis of the tertiary structure of the ribonuclease P ribozyme-substrate complex by site-specific photoaffinity crosslinking. RNA. 3:1997;561-576.
21. Heide C., Busch S., Feltens R., Hartmann R.K. Distinct modes of mature and precursor tRNA binding to Escherichia coli RNase P RNA revealed by NAIM analyses. RNA. 7:2001;553-564.
22. Hopper A.K., Phizicky E.M. tRNA transfers to the limelight. Genes Dev. 17:2003;162-180.
23. Houser-Scott F., Xiao S., Millikin C.E., Zengel J.M., Lindahl L., Engelke D.R. Interactions among the protein and RNA subunits of Saccharomyces cerevisiae nuclear RNase P. Proc. Natl. Acad. Sci. USA. 99:2002;2684-2689.
24. Jarrous N. Human ribonuclease P. subunits, function and intranuclear localization RNA. 8:2002;1-7.
25. Jarrous N., Altman S. Human ribonuclease P. Methods Enzymol. 342:2001;93-100.
26. Jarrous N., Eder P.S., Wesolowski D., Altman S. Rpp14 and Rpp29, two protein subunits of human ribonuclease P. RNA. 5:1999;153-157.
27. Jarrous N., Reiner R., Wesolowski D., Mann H., Guerrier-Takada C., Altman S. Function and subnuclear distribution of Rpp21, a protein subunit of the human ribonucleoprotein ribonuclease P. RNA. 7:2001;1153-1164.
28. Jiang T., Guerrier-Takada C., Altman S. Protein-RNA interactions in the subunits of human nuclear RNase P. RNA. 7:2001;937-941.
29. Kirsebom L.A., Svard S.G. Base pairing between Escherichia coli RNase P RNA and its substrate. EMBO J. 13:1994;4870-4876.
30. Kouzuma Y., Mizoguchi M., Takagi H., Fukuhara H., Tsukamoto M., Numata T., Kimura M. Reconstitution of archaeal ribonuclease P from RNA and four protein components. Biochem. Biophys. Res. Commun. 306:2003;666-673.
31. Kufel J., Kirsebom L.A. The P15-loop of Escherichia coli RNase P RNA is an autonomous divalent metal ion binding domain. RNA. 4:1998;777-788.
32. Kurz J.C., Fierke C.A. The affinity of magnesium binding sites in the Bacillus subtilis RNase P·pre-tRNA complex is enhanced by the protein subunit. Biochemistry. 41:2002;9545-9558.
33. Liu F., Altman S. Differential evolution of substrates for an RNA enzyme in the presence and absence of its protein cofactor. Cell. 77:1994;1093-1100.
34. Lygerou Z., Allmang C., Tollervey D., Seraphin B. Accurate processing of a eukaryotic precursor ribosomal RNA by ribonuclease MRP in vitro. Science. 272:1996;268-270.
35. Niranjanakumari S., Stams T., Crary S.M., Christianson D.W., Fierke C.A. Protein component of the ribozyme ribonuclease P alters substrate recognition by directly contacting precursor tRNA. Proc. Natl. Acad. Sci. USA. 95:1998;15212-15217.
36. Pederson T., Politz J.C. The nucleolus and the four ribonucleoproteins of translation. J. Cell Biol. 148:2000;1091-1095.
37. Sharkady S.M., Nolan J.M. Bacterial ribonuclease P holoenzyme crosslinking analysis reveals protein interaction sites on the RNA subunit. Nucleic Acids Res. 29:2001;3848-3856.
38. Stams T., Niranjanakumari S., Fierke C.A., Christianson D.W. Ribonuclease P protein structure. evolutionary origins in the translational apparatus Science. 280:1998;752-755.
39. van Eenennaam H., Lugtenberg D., Vogelzangs J.H., van Venrooij W.J., Pruijn G.J. hPop5, a protein subunit of the human RNase MRP and RNase P endoribonucleases. J. Biol. Chem. 276:2001;31635-31641.
40. Watkins N.J., Segault V., Charpentier B., Nottrott S., Fabrizio P., Bachi A., Wilm M., Rosbash M., Branlant C., Luhrmann R. A common core RNP structure shared between the small nucleoar box C/D RNPs and the spliceosomal U4 snRNP. Cell. 103:2000;457-466.
41. Wolin S.L., Matera A.G. The trials and travels of tRNA. Genes Dev. 13:1999;1-10.
42. Xiao S., Scott F., Fierke C.A., Engelke D.R. Eukaryotic RNase P. a plurality of ribonucleoprotein enzymes Annu. Rev. Biochem. 71:2002;166-189.
43. Yuan Y., Altman S. Substrate recognition by human RNase P. identification of small, model substrates for the enzyme EMBO J. 14:1995;159-168.
44. Vioque A., Arnez J., Altman S. Protein-RNA interactions in the RNase P holoenzyme from Escherichia coli. J. Mol. Biol. 202:1988;835-848.
45. Zahler N.H., Christian E.L., Harris M.E. Recognition of the 5′ leader of pre-tRNA substrates by the active site of ribonuclease P. RNA. 9:2003;734-745.