Genomic screening of head and neck cancer and its implications for therapy planning

European Archives of Oto-Rhino-Laryngology

Volumn 263, Issue 4, 2006, Pages 297-304

  Akervall, Jan ^a,b  

^a WILLIAM BEAUMONT HOSPITAL   (United States)

^b Rontal Clinic   (United States)

Author keywords

cDNA micro array; CGH; Gene profiling; Head and neck cancer; Squamous cell carcinoma

Indexed keywords

BASIC FIBROBLAST GROWTH FACTOR; CARCINOEMBRYONIC ANTIGEN; CAVEOLIN 1; CAVEOLIN 2; COLLAGEN TYPE 11; COLLAGENASE 3; CONNEXIN 26; CYCLIN D1; CYTOKERATIN 16; CYTOKERATIN 6; DNA; GELATINASE A; HERMES ANTIGEN; KALININ; MATRIX METALLOPROTEINASE 14; MUCIN 1; PROTEIN 14 3 3; STRESS ACTIVATED PROTEIN KINASE; TISSUE INHIBITOR OF METALLOPROTEINASE 1; VASCULOTROPIN;

CANCER GROWTH; CANCER RELAPSE; CANCER STAGING; CANCER SURVIVAL; CARCINOGENESIS; CHROMOSOME ABERRATION; COMPARATIVE GENOMIC HYBRIDIZATION; CYTOGENETICS; DNA MICROARRAY; ESTHESIONEUROBLASTOMA; GENE EXPRESSION PROFILING; HEAD AND NECK CANCER; HUMAN; HUMAN TISSUE; INDIVIDUALIZATION; METASTASIS; PRIORITY JOURNAL; PROGNOSIS; REVIEW; SPECTRAL KARYOTYPING; SQUAMOUS CELL CARCINOMA; TREATMENT PLANNING; TUMOR DIFFERENTIATION;

CYTOGENETIC ANALYSIS; DISEASE PROGRESSION; GENE EXPRESSION PROFILING; GENOMIC IMPRINTING; HEAD AND NECK NEOPLASMS; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROGNOSIS; SPECTRAL KARYOTYPING; TUMOR MARKERS, BIOLOGICAL;

EID: 33745574643     PISSN: 09374477     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00405-006-1039-1     Document Type: Review

References (48)

1. Quon H, Liu F, Cummings B (2001) Potential molecular prognostic markers in head and neck squamous cell carcinomas. Head Neck 23:147-159
2. van't Veer L, Dai H, van de Vijer M (2001) Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Proc Natl Acad Sci USA 98:10869-10874
3. Singh D, Febbo P, Ross K, Jackson D, Manola J, Ladd C, et al (2002) Gene expression correlates of clinical prostate cancer behavior. Cancer Cell 1:203-209
4. Kallioniemi A, Kallioniemi O, Sudar D, Rutovitz D, Gray J, Waldman F et al (1992) Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors. Science 258:818-821
5. Liyanage M, Coleman A, du Manoir S, Veldman T, McCormack S, Dickson R, et al (1996) Multicolour spectral karyotyping of mouse chromosomes. Nat Genet 14:312-315
6. Eisen M, Brown P (1991) DNA arrays for analysis of gene expression. Methods Enzymol 303:170-205
7. Gollin S (2001) Chromosomal alterations in squamous cell carcinomas of the head and neck: window to the biology of disease. Head Neck 23:238-253
8. Gebhart E (2004) Comparative genomic hybridization (CGH): 10 years of substantial progress in human solid tumor molecular cytogenetics. Cytogenet Genome Res 104:352-358
9. Brzoska P, Levin N, Fu K, Kaplan M, Singer M, Gray J, et al (1995) Frequent novel DNA copy number increase in squamous cell head and neck tumors. Cancer Res 15:3055-3059
10. Speicher M, Howe C, Crotty P, du Manoir S, Costa J, Ward D (1995) Comparative genomic hybridization detects novel deletions and amplifications in head and neck squamous cell carcinomas. Cancer Res 55:1010-1013
11. Bockmuhl U, Petersen S, Schmidt S, Wolf G, Jahnke V, Dietel M, et al (1997) Patterns of chromosomal imbalances in metastasizing and nonmetastasizing head and neck cancer. Cancer Res 57:5313-5316
12. Bockmuhl U, Schluns K, Schmidt S, Matthias S, Petersen I (2002) Chromosomal alterations during metastasis formation of head and neck squamous cell carcinoma. Genes Chromosomes Cancer 33:29-35
13. Patmore H, James N, Cawkwell L, MacDonald A, Stafford N, Greenman J (2004) Can a genetic signature for metastatic head and neck squamous cell carcinoma be characterised by comparative genomic hybridisation? Br J Cancer 90:1976-1982
14. Bockmuhl U, You X, Pacyna-Gengelbach M, Arps H, Draf W, Petersen I (2004) CGH pattern of esthesioneuroblastoma and their metastases. Brain Pathol 14:158-163
15. Riazimand S, Brieger J, Jacob R, Welkoborsky H, Mann W (2002) Analysis of cytogenetic aberrations in esthesioneuroblastomas by comparative genomic hybridization. Cancer Genet Cytogenet 136:53-57
16. Bockmuhl U, Schwendel A, Dietel M, Petersen I (1996) Distinct patterns of chromosomal alterations in high and low grade head and neck squamous cell carcinomas. Cancer Res 56:5325-5329
17. Schwerer M, Hemmer J, Kraft K, Maier H, Moller P, Barth T (2003) Endoreduplication in conjunction with tumor progression in an aneuploid laryngeal squamous cell carcinoma. Virchows Arch 443:98-103
18. Huang Q, Yu G, McCormick S, Mo J, Datta B, Mahimkar M, et al (2002) Genetic differences detected by comparative genomic hybridization in head and neck squamous cell carcinomas from different tumor sites: construction of oncogenetic trees for tumor progression. Genes Chromosomes Cancer 34:224-233
19. Golub T, Slonim D, Tamayo P, Huard C, Gaasenbeek M, Mesirov J, et al (1999) Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286:531-537
20. Alizadeh A, Eisen M, Davis R, Ma C, Lossos I, Rosenwald A, et al (2000) Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 403:503-511
21. Cromer A, Carles A, Millon R, Ganguli G, Chalmel F, Lemaire F, et al (2003) Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarra analysis. Oncogene 23:2484-2498
22. Lemaire F, Millon R, Young J, Cromer A, Wasylyk C, Schultz I, et al (2003) Differential expression profiling of head and neck squamous cell carcinoma (HNSCC). Br J Cancer 89:1940-1949
23. Villaret D, Wang T, Dillon D, Xu J, Sivam D, Cheever M, et al (2000) Identification of genes overexpressed in head and neck squamous cell carcinoma using a combination of complementary DNA subtraction and microarray analysis. Laryngoscope 110:374-381
24. Sok J, Kuriakose M, Mahajan V, Pearlman A, DeLacure M, Chen F (2003) Tissue-specific gene expression of head and neck squamous cell carcinoma in vivo by complementary DNA microarray analysis. Arch Otolaryngol Head Neck Surg 129:760-770
25. Alevizos I, Mahadevappa M, Zhang X, Ohyama H, Kohno Y, Posner M, et al (2001) Oral cancer in vivo gene expression profiling assisted by laser capture microdissection and microarray analysis. Oncogene 27:6196-6204
26. Leethanakul C, Knezevic V, Patel V, Amornphimoltham P, Gillespie J, Shillitoe E, et al (2003) Gene discovery in oral squamous cell carcinoma through the Head and Neck Cancer Genome Anatomy Project: confirmation by microarray analysis. Oral Oncol 39:248-258
27. Leethanakul C, Patel V, Gillespie J, Shillitoe E, Kellman R, Ensley J, et al (2000) Gene expression profiles in squamous cell carcinomas of the oral cavity: use of laser capture microdissection for the construction and analysis of stage-specific cDNA libraries. Oral Oncol 36:474-483
28. Leethanakul C, Patel V, Gillespie J, Pallente M, Ensley J, Koontongkaew S, et al (2000) Distinct pattern of expression of differentiation and growth-related genes in squamous cell carcinomas of the head and neck revealed by the use of laser capture microdissection and cDNA arrays. Oncogene 19:3220-3224
29. Al Moustafa A, Alaoui-Jamali M, Batist G, Hernandez-Perez M, Serruya C, Alpert L, et al (2002) Identification of genes associated with head and neck carcinogenesis by cDNA microarray comparison between matched primary normal epithelial and squamous carcinoma cells. Oncogene 21:2634-2640
30. El-Naggar A, Kim H, Clayman G, Coombes M, Le B, Lai S, et al (2002) Differential expression profiling of head and neck squamous carcinoma: significance in their phenotypic and biological classification. Oncogene 21:8206-8219
31. Mendez E, Cheng C, Farwell D, Ricks S, Agoff S, Futran N, et al (2002) Transcriptional expression profiles of oral squamous cell carcinomas. Cancer 95:1482-1494
32. Schmalbach C, Chepeha D, Giordano T, Rubin M, Teknos T, Bradford C, et al (2004) Molecular profiling and the identification of genes associated with metastatic oral cavity/pharynx squamous cell carcinoma. Arch Otolaryngol Head Neck Surg 130:295-302
33. Nagata M, Fujita H, Ida H, Hoshina H, Inoue T, Seki Y, et al (2003) Identification of potential biomarkers of lymph node metastasis in oral squamous cell carcinoma by cDNA microarray analysis. Int J Cancer 106:683-689
34. Ito H, Hatori M, Kinugasa Y, Irie T, Tachikawa T, Nagumo M (2003) Comparison of the expression profile of metastasis-associated genes between primary and circulating cancer cells in oral squamous cell carcinoma. Anticancer Res 23:1425-1431
35. Cromer A, Carles A, Millon R, Ganguli G, Chalmel F, Lemaire F, et al (2004) Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis. Oncogene 23:2484-2498
36. Hu Y, Lam K, Law S, Wong J, Srivastava G (2001) Profiling of differentially expressed cancer-related genes in esophageal squamous cell carcinoma (ESCC) using human cancer cDNA arrays: overexpression of oncogene MET correlates with tumor differentiation in ESCC. Clin Cancer Res 7:3519-3525
37. Akervall J, Jin Y, Wennerberg J, Zatterstrom U, Kjellén E, Mertens F, et al (1995) Chromosomal abnormalities involving 11q13 are associated with poor prognosis in patients with squamous cell carcinoma of the head and neck. Cancer 76:853-859
38. Zaharieva B, Simon R, Diener P, Ackermann D, Maurer R, Alund G, et al (2003) High-throughput tissue microarray analysis of 11q13 gene amplification (CCND1, FGF3, FGF4, EMS1) in urinary bladder cancer. J Pathol 201:603-608
39. Bockmuhl U, Schluns K, Kuchler I, Petersen S, Petersen I (2000) Genetic imbalances with impact on survival in Head and Neck cancer patients. Am J Pathol 157:369-375
40. Wreesmann V, Shi W, Thaler H, Poluri A, Kraus D, Pfister D, et al (2004) Identification of novel prognosticators of outcome in squamous cell carcinoma of the head and neck. J Clin Oncol 22:3965-3972
41. Pearlstein R, Benninger M, Carey T (1998) Loss of 18q predicts poor survival of patients with squamous cell carcinoma of the head and neck. Genes Chromosomes Cancer 21:333-339
42. Wreesmann V, Sieczka E, Socci N, Hezel M, Belbin T, Childs G, et al (2004) Genome-wide profiling of papillary thyroid cancer identifies MUC1 as an independent prognostic marker. Cancer Res 64:3780-3789
43. Yoo G, Piechocki M, Ensley J, Nguyen T, Oliver J, Meng H, et al (2002) Docetaxel induced gene expression patterns in head and neck squamous cell carcinoma using cDNA microarray and PowerBlot. Clin Cancer Res 8:3910-3921
44. Akervall J, Guo X, Qian C-N, Schoumans J, Cole A, Leeser B, et al (2004) Genetic and expression profiles of squamous cell carcinoma of the head and neck correlate with cisplatin sensitivity and resistance in cell lines and patients. Clin Cancer Res 10:8204-8213
45. Kihara C, Tsunoda T, Tanaka T, Yamana H, Furukawa Y, Ono K, et al (2001) Prediction of sensitivity of esophageal tumors to adjuvant chemotherapy by cDNA microarray analysis of gene-expression profiles. Cancer Res 61:6474-6479
46. Belbin T, Singh B, Barber I, Socci N, Wenig B, Smith R, et al (2002) Molecular classification of head and neck squamous cell carcinoma using cDNA microarrays. Cancer Res 62:1184-1190
47. Ishibashi Y, Hanyu N, Nakada K, Suzuki Y, Yamamoto T, Yanaga K, et al (2003) Profiling gene expression ratios of paired cancerous and normal tissue predicts relapse of esophageal squamous cell carcinoma. Cancer Res 63:5159-5164
48. Genden E, Ferlito A, Bradley P, Rinaldo A, Scully C (2003) Neck disease and distant metastases. Oral Oncol 39:207-212